Rroxscaffold_2G00119600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016251
Physical Location & Seq
Reverse (-)
51507608 .. 51508369
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119600.1

Sequence Viewer

Length: 327 bp
ATGACGGCGGTGGGAATAGACTCTAGGATACTAAAGCGAATCAGAGAAGGCCCCGCCTCCCGGGACGTCGCCCCTCCGAGTACGAACCAAAGGCGCAACGACCATTATTGGCGGGTAATCAAGCGAATGGAAGAAATGGATCGCCTCCGAAACGAGACGATGATTGAGAGAATGAAGCAAAGGAGATCGAAATCACAACCTGCGGTTTTGGAGCTTGATGTGGCTCCGTGTCCGCTTCACGGCCTCGACACGAGAGGATTTGGGGTGCCGCCGAGGAAGCTGCCGAGAGTTGGAGAGATCGGAGTCGGCTTGATAGGAGCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.3

Weight (kDa)

10.77

Isoelectric Point (pI)

62.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 69
Acc36I ACCTGC 1 cut(s) 208
AccB1I GGYRCC 1 cut(s) 265
AciI CCGC 6 cut(s) 8, 54, 112, 203, 233, 269
AclWI GGATC 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 82
AfiI CCNNNNNNNGG 3 cut(s) 60, 239, 290
AluBI AGCT 2 cut(s) 214, 280
AluI AGCT 2 cut(s) 214, 280
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 147
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 2 cut(s) 49, 241
ApeKI GCWGC 1 cut(s) 280
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 2 cut(s) 61, 62
AvaI CYCGRG 1 cut(s) 60
BanI GGYRCC 1 cut(s) 265
BauI CACGAG 1 cut(s) 250
BbvI GCAGC 1 cut(s) 267
BceAI ACGGC 2 cut(s) 21, 256
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciVI GTATCC 1 cut(s) 21
BcnI CCSGG 2 cut(s) 61, 62
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 24
BfuAI ACCTGC 1 cut(s) 208
BfuI GTATCC 1 cut(s) 21
BisI GCNGC 2 cut(s) 269, 281
BlsI GCNGC 2 cut(s) 270, 282
Bme1390I CCNGG 2 cut(s) 61, 62
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 3 cut(s) 52, 225, 267
BmrFI CCNGG 2 cut(s) 61, 62
BpuMI CCSGG 2 cut(s) 61, 62
BsaBI GATNNNNATC 1 cut(s) 190
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 60, 272
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 239, 290
Bse8I GATNNNNATC 1 cut(s) 190
BseDI CCNNGG 2 cut(s) 60, 272
BseJI GATNNNNATC 1 cut(s) 190
BseLI CCNNNNNNNGG 3 cut(s) 60, 239, 290
BseXI GCAGC 1 cut(s) 267
BshFI GGCC 2 cut(s) 51, 243
BshNI GGYRCC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 61
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 3 cut(s) 60, 239, 290
BsmAI GTCTC 1 cut(s) 149
BsmBI CGTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 2 cut(s) 51, 243
BsoBI CYCGRG 1 cut(s) 60
Bsp143I GATC 3 cut(s) 139, 185, 297
BspACI CCGC 6 cut(s) 8, 54, 112, 203, 233, 269
BspANI GGCC 2 cut(s) 51, 243
BspLI GGNNCC 3 cut(s) 52, 225, 267
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 60, 272
BssMI GATC 3 cut(s) 139, 185, 297
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 1 cut(s) 250
Bst2BI CACGAG 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 66
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 3 cut(s) 142, 188, 300
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 139, 185, 297
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstSCI CCNGG 2 cut(s) 59, 60
BstV1I GCAGC 1 cut(s) 267
BsuI GTATCC 1 cut(s) 21
BsuRI GGCC 2 cut(s) 51, 243
BveI ACCTGC 1 cut(s) 208
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 50
Cfr9I CCCGGG 1 cut(s) 60
Csp6I GTAC 1 cut(s) 81
CviJI RGCY 6 cut(s) 51, 214, 224, 243, 280, 309
CviKI_1 RGCY 6 cut(s) 51, 214, 224, 243, 280, 309
CviQI GTAC 1 cut(s) 81
DpnI GATC 3 cut(s) 141, 187, 299
DpnII GATC 3 cut(s) 139, 185, 297
Eco88I CYCGRG 1 cut(s) 60
EcoO109I RGGNCCY 1 cut(s) 50
Esp3I CGTCTC 1 cut(s) 149
FaqI GGGAC 1 cut(s) 77
FauI CCCGC 2 cut(s) 61, 105
Fnu4HI GCNGC 2 cut(s) 269, 281
Fsp4HI GCNGC 2 cut(s) 269, 281
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 95
GluI GCNGC 2 cut(s) 269, 281
HaeIII GGCC 2 cut(s) 51, 243
HapII CCGG 1 cut(s) 61
HhaI GCGC 1 cut(s) 96
Hin1I GRCGYC 1 cut(s) 66
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HinfI GANTC 3 cut(s) 20, 39, 303
HpaII CCGG 1 cut(s) 61
Hpy188I TCNGA 4 cut(s) 44, 78, 149, 302
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 66
HspAI GCGC 1 cut(s) 94
Kzo9I GATC 3 cut(s) 139, 185, 297
LmnI GCTCC 3 cut(s) 211, 229, 317
LpnPI CCDG 2 cut(s) 74, 213
Lsp1109I GCAGC 1 cut(s) 267
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 66
MalI GATC 3 cut(s) 141, 187, 299
MboI GATC 3 cut(s) 139, 185, 297
MboII GAAGA 1 cut(s) 143
MlyI GAGTC 2 cut(s) 14, 312
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 6 cut(s) 67, 84, 155, 248, 254, 267
MseI TTAA 1 cut(s) 325
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 2 cut(s) 61, 62
MwoI GCNNNNNNNGC 1 cut(s) 277
NciI CCSGG 2 cut(s) 61, 62
NdeII GATC 3 cut(s) 139, 185, 297
NlaIV GGNNCC 3 cut(s) 52, 225, 267
NmeAIII GCCGAG 2 cut(s) 297, 309
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 2 cut(s) 270, 282
PleI GAGTC 2 cut(s) 14, 311
PpsI GAGTC 2 cut(s) 14, 311
PspN4I GGNNCC 3 cut(s) 52, 225, 267
PspPI GGNCC 1 cut(s) 50
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 2 cut(s) 269, 281
Sau3AI GATC 3 cut(s) 139, 185, 297
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 2 cut(s) 14, 312
ScrFI CCNGG 2 cut(s) 61, 62
SetI ASST 4 cut(s) 69, 202, 216, 282
SmaI CCCGGG 1 cut(s) 62
SsiI CCGC 6 cut(s) 8, 54, 112, 203, 233, 269
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 2 cut(s) 59, 60
TaiI ACGT 1 cut(s) 69
TaqI TCGA 2 cut(s) 188, 246
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TseI GCWGC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 188
TspGWI ACGGA 1 cut(s) 216
TspMI CCCGGG 1 cut(s) 60
XmaI CCCGGG 1 cut(s) 60
XspI CTAG 1 cut(s) 24
ZraI GACGTC 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.