Rh6CG015100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0016251
Physical Location & Seq
Reverse (-)
1624310 .. 1632764
8455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG015100.1

Sequence Viewer

Length: 549 bp
ATGTGGCTCCAGATCTGCTTCACGGCCTCGGCGCGAGAGGACTCAGGGGTGCCGCCGAGGAAGCTGCCGAGAGCTGGAGAGATCGGAGTCGGCTTCAGAATGTCAGCGTTCCTGTTGACGTTTCTCTTGGGCTTGATCGCGTCGGCGTCTGCTTTGGGCTTCGCCTTCGCCTTCGATTTTGGTGCGGCGGCGGCGACCTTGACGGCGGTTCCAGCAATGGATGTGGAGGACTTGGCCGGCAGTGGGAAGAAGAACGGGGACCTTGGTGGTGCTCGGGAGAAGGAAATAGAGCTCCTGCGTGGTAGACTACAGGAGCTGATGTCGCTGCCTTTGACTGTGGCACAGCAGCAGGAGAGTACCACTCTTTCTGCTAGGCTTGATGCACTTCTCTCAGAACTTAATGATTATTGGAAGCAACGTCTAAAGTGGTGGAGGGATCTTAACAATGATGGTGTTGGGGAGTCTAGATATGCTCTTCCCAAATCTGATCAAGTGACCTCATCTTGTGAAACTTGGGGGAAATTATCATTGCTGAAAAGAATTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

19.83

Weight (kDa)

6.35

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 49
AccI GTMKAC 1 cut(s) 304
AccII CGCG 2 cut(s) 34, 140
AciI CCGC 5 cut(s) 53, 185, 188, 191, 206
AclWI GGATC 1 cut(s) 444
AcoI YGGCCR 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 146
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 2 cut(s) 74, 243
AluBI AGCT 4 cut(s) 64, 74, 292, 316
AluI AGCT 4 cut(s) 64, 74, 292, 316
Alw21I GWGCWC 2 cut(s) 274, 294
AlwI GGATC 1 cut(s) 444
AlwNI CAGNNNCTG 1 cut(s) 316
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 2 cut(s) 24, 234
ApeKI GCWGC 3 cut(s) 64, 325, 346
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 294
Bbv12I GWGCWC 2 cut(s) 274, 294
BbvI GCAGC 3 cut(s) 51, 312, 358
BccI CCATC 1 cut(s) 443
BceAI ACGGC 2 cut(s) 39, 219
BcgI CGANNNNNNTGC 4 cut(s) 46, 80, 164, 198
BclI TGATCA 1 cut(s) 487
BfaI CTAG 2 cut(s) 372, 465
BfmI CTRYAG 1 cut(s) 308
BglII AGATCT 1 cut(s) 12
BisI GCNGC 7 cut(s) 53, 65, 186, 189, 192, 326, 347
BlsI GCNGC 7 cut(s) 54, 66, 187, 190, 193, 327, 348
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 4 cut(s) 8, 51, 210, 260
BmsI GCATC 1 cut(s) 370
BplI GAGNNNNNCTC 2 cut(s) 346, 378
BpmI CTGGAG 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 146
BsaJI CCNNGG 3 cut(s) 27, 56, 262
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 243
Bse118I RCCGGY 1 cut(s) 236
Bse3DI GCAATG 2 cut(s) 222, 527
BseDI CCNNGG 3 cut(s) 27, 56, 262
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 74, 243
BseMI GCAATG 2 cut(s) 222, 527
BseMII CTCAG 2 cut(s) 57, 405
BseXI GCAGC 3 cut(s) 51, 312, 358
Bsh1236I CGCG 2 cut(s) 34, 140
BshFI GGCC 2 cut(s) 26, 236
BshNI GGYRCC 1 cut(s) 49
BsiHKAI GWGCWC 2 cut(s) 274, 294
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 74, 243
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 2 cut(s) 26, 236
BsoBI CYCGRG 1 cut(s) 273
Bsp1286I GDGCHC 2 cut(s) 274, 294
Bsp143I GATC 5 cut(s) 12, 81, 135, 436, 487
BspACI CCGC 5 cut(s) 53, 185, 188, 191, 206
BspANI GGCC 2 cut(s) 26, 236
BspCNI CTCAG 2 cut(s) 56, 404
BspFNI CGCG 2 cut(s) 34, 140
BspLI GGNNCC 4 cut(s) 8, 51, 210, 260
BspPI GGATC 1 cut(s) 444
BspQI GCTCTTC 1 cut(s) 480
BspT107I GGYRCC 1 cut(s) 49
BsrDI GCAATG 2 cut(s) 222, 527
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 3 cut(s) 27, 56, 262
BssMI GATC 5 cut(s) 12, 81, 135, 436, 487
BssNI GRCGYC 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 1 cut(s) 480
BstACI GRCGYC 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 43, 391
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 2 cut(s) 34, 140
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 5 cut(s) 15, 84, 138, 439, 490
BstMBI GATC 5 cut(s) 12, 81, 135, 436, 487
BstMWI GCNNNNNNNGC 4 cut(s) 61, 191, 212, 322
BstSFI CTRYAG 1 cut(s) 308
BstUI CGCG 2 cut(s) 34, 140
BstV1I GCAGC 3 cut(s) 51, 312, 358
BstX2I RGATCY 2 cut(s) 12, 436
BstYI RGATCY 2 cut(s) 12, 436
BsuRI GGCC 2 cut(s) 26, 236
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 238
CaiI CAGNNNCTG 1 cut(s) 316
CfoI GCGC 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 259
CseI GACGC 2 cut(s) 129, 135
Csp6I GTAC 1 cut(s) 357
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 2 cut(s) 43, 391
DpnI GATC 5 cut(s) 14, 83, 137, 438, 489
DpnII GATC 5 cut(s) 12, 81, 135, 436, 487
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Ecl136II GAGCTC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 259
Eco53kI GAGCTC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 262
FaiI YATR 1 cut(s) 471
FaqI GGGAC 1 cut(s) 272
FbaI TGATCA 1 cut(s) 487
FblI GTMKAC 1 cut(s) 304
Fnu4HI GCNGC 7 cut(s) 53, 65, 186, 189, 192, 326, 347
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 7 cut(s) 53, 65, 186, 189, 192, 326, 347
FspBI CTAG 2 cut(s) 372, 465
GlaI GCGC 1 cut(s) 33
GluI GCNGC 7 cut(s) 53, 65, 186, 189, 192, 326, 347
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 2 cut(s) 26, 236
HapII CCGG 1 cut(s) 237
HgaI GACGC 2 cut(s) 129, 135
HhaI GCGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 146
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 3 cut(s) 41, 87, 461
HpaII CCGG 1 cut(s) 237
Hpy166II GTNNAC 2 cut(s) 117, 305
Hpy188I TCNGA 4 cut(s) 86, 98, 394, 487
Hpy188III TCNNGA 3 cut(s) 10, 275, 465
Hpy8I GTNNAC 2 cut(s) 117, 305
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 3 cut(s) 175, 181, 274
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 2 cut(s) 119, 418
HpyCH4V TGCA 1 cut(s) 383
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 191, 212, 322
HpyF3I CTNAG 2 cut(s) 43, 391
HpySE526I ACGT 2 cut(s) 119, 418
Hsp92I GRCGYC 1 cut(s) 146
HspAI GCGC 1 cut(s) 32
KroI GCCGGC 1 cut(s) 236
KroNI GCCGGC 1 cut(s) 238
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 5 cut(s) 12, 81, 135, 436, 487
LguI GCTCTTC 1 cut(s) 480
LmnI GCTCC 3 cut(s) 12, 297, 313
LpnPI CCDG 9 cut(s) 23, 30, 60, 125, 225, 250, 296, 308, 335
Lsp1109I GCAGC 3 cut(s) 51, 312, 358
LweI GCATC 1 cut(s) 370
MaeI CTAG 2 cut(s) 372, 465
MaeII ACGT 2 cut(s) 119, 418
MaeIII GTNAC 1 cut(s) 493
MalI GATC 5 cut(s) 14, 83, 137, 438, 489
MboI GATC 5 cut(s) 12, 81, 135, 436, 487
MboII GAAGA 3 cut(s) 259, 262, 467
MflI RGATCY 2 cut(s) 12, 436
MhlI GDGCHC 2 cut(s) 274, 294
MluCI AATT 2 cut(s) 521, 540
MlyI GAGTC 3 cut(s) 35, 96, 470
MnlI CCTC 6 cut(s) 31, 37, 51, 220, 426, 508
MroNI GCCGGC 1 cut(s) 236
MseI TTAA 2 cut(s) 399, 441
MspI CCGG 1 cut(s) 237
MvnI CGCG 2 cut(s) 34, 140
MwoI GCNNNNNNNGC 4 cut(s) 61, 191, 212, 322
NaeI GCCGGC 1 cut(s) 238
NdeII GATC 5 cut(s) 12, 81, 135, 436, 487
NgoMIV GCCGGC 1 cut(s) 236
NlaIV GGNNCC 4 cut(s) 8, 51, 210, 260
NmeAIII GCCGAG 3 cut(s) 8, 81, 93
NmuCI GTSAC 1 cut(s) 493
PciSI GCTCTTC 1 cut(s) 480
PdiI GCCGGC 1 cut(s) 238
PkrI GCNGC 7 cut(s) 54, 66, 187, 190, 193, 327, 348
PleI GAGTC 3 cut(s) 35, 95, 469
PpsI GAGTC 3 cut(s) 35, 95, 469
PpuMI RGGWCCY 1 cut(s) 259
Psp124BI GAGCTC 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 259
PspN4I GGNNCC 4 cut(s) 8, 51, 210, 260
PspPI GGNCC 1 cut(s) 259
PspPPI RGGWCCY 1 cut(s) 259
PstNI CAGNNNCTG 1 cut(s) 316
PsuI RGATCY 2 cut(s) 12, 436
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
SacI GAGCTC 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 399, 441
SatI GCNGC 7 cut(s) 53, 65, 186, 189, 192, 326, 347
Sau3AI GATC 5 cut(s) 12, 81, 135, 436, 487
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 3 cut(s) 35, 96, 470
SduI GDGCHC 2 cut(s) 274, 294
SetI ASST 9 cut(s) 66, 76, 122, 200, 264, 294, 318, 421, 500
SfaNI GCATC 1 cut(s) 370
SfcI CTRYAG 1 cut(s) 308
SinI GGWCC 1 cut(s) 259
Sse9I AATT 2 cut(s) 521, 540
SsiI CCGC 5 cut(s) 53, 185, 188, 191, 206
SspMI CTAG 2 cut(s) 372, 465
SstI GAGCTC 1 cut(s) 294
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 2 cut(s) 122, 421
TaqI TCGA 1 cut(s) 174
TasI AATT 2 cut(s) 521, 540
TauI GCSGC 4 cut(s) 55, 188, 191, 194
Tru1I TTAA 2 cut(s) 399, 441
Tru9I TTAA 2 cut(s) 399, 441
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 3 cut(s) 64, 325, 346
Tsp45I GTSAC 1 cut(s) 493
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 259
XbaI TCTAGA 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 304
XspI CTAG 2 cut(s) 372, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.