Rroxscaffold_7G00165270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016251
Physical Location & Seq
Forward (+)
7077250 .. 7078200
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00165270.1

Sequence Viewer

Length: 426 bp
ATGATGGCAGTGGGAATAGACTCTAGGATGCTAAAGCGAATCAGGAGAAGGCCCCGGCAGCCTGGGACGTCAGCCCCTCCAAGTATGAACCAGAGGCTCAACGGCCATTATTGGCAAGTTTTGGAGCTTGATGTGGCTCCAGATCTACTTCACGGCCTAGGCGCGAGAGGACTCAGGGGTGCCGTCGAGGAAGCTGACGAGAGCTGGAGAGATCGGAGTCAGCTTCAGAATGCCAGCGTTCCTGTTGACGTTTCTCTTGGGCTTGATCGCGTCAGCGTTTGCTTTGGGCTTCGCCTTCGATTTTGGTGTGGCGGCGGCGACCTTGACGACGGTTCCAGCAGTGGATGTGGAGGACTTGGCCGGCAGTGGGAAGAAGAACAGGGACCTTGGTGGTCGTCTGGAAGAGAGAGGGGGAGGGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.68

Weight (kDa)

7.77

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 179
AccII CGCG 2 cut(s) 164, 270
AciI CCGC 2 cut(s) 312, 315
AcoI YGGCCR 2 cut(s) 103, 358
AcuI CTGAAG 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 367
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 4 cut(s) 127, 194, 204, 223
AluI AGCT 4 cut(s) 127, 194, 204, 223
AoxI GGCC 4 cut(s) 50, 103, 154, 358
ApeKI GCWGC 1 cut(s) 58
AspA2I CCTAGG 1 cut(s) 157
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 51, 383
AsuC2I CCSGG 1 cut(s) 55
AvaII GGWCC 1 cut(s) 383
AvrII CCTAGG 1 cut(s) 157
BanI GGYRCC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 70
BceAI ACGGC 3 cut(s) 118, 167, 169
BciT130I CCWGG 1 cut(s) 63
BcnI CCSGG 1 cut(s) 55
BfaI CTAG 2 cut(s) 24, 158
BglII AGATCT 1 cut(s) 142
BisI GCNGC 3 cut(s) 59, 313, 316
BlnI CCTAGG 1 cut(s) 157
BlsI GCNGC 3 cut(s) 60, 314, 317
Bme1390I CCNGG 2 cut(s) 55, 63
Bme18I GGWCC 1 cut(s) 383
BmgT120I GGNCC 2 cut(s) 51, 383
BmiI GGNNCC 5 cut(s) 53, 138, 181, 334, 384
BmrFI CCNGG 2 cut(s) 55, 63
BmsI GCATC 1 cut(s) 18
BpmI CTGGAG 2 cut(s) 123, 226
BpuMI CCSGG 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 4 cut(s) 53, 62, 157, 386
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse118I RCCGGY 1 cut(s) 360
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 4 cut(s) 53, 62, 157, 386
BseGI GGATG 2 cut(s) 33, 350
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 70
Bsh1236I CGCG 2 cut(s) 164, 270
BshFI GGCC 4 cut(s) 52, 105, 156, 360
BshNI GGYRCC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 55, 361
BslFI GGGAC 2 cut(s) 79, 396
BslI CCNNNNNNNGG 1 cut(s) 367
BsmFI GGGAC 2 cut(s) 79, 396
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 4 cut(s) 52, 105, 156, 360
Bsp143I GATC 3 cut(s) 142, 211, 265
BspACI CCGC 2 cut(s) 312, 315
BspANI GGCC 4 cut(s) 52, 105, 156, 360
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 2 cut(s) 164, 270
BspLI GGNNCC 5 cut(s) 53, 138, 181, 334, 384
BspT107I GGYRCC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 360
BssAI RCCGGY 1 cut(s) 360
BssECI CCNNGG 4 cut(s) 53, 62, 157, 386
BssMI GATC 3 cut(s) 142, 211, 265
BssNI GRCGYC 1 cut(s) 68
BssT1I CCWWGG 2 cut(s) 157, 386
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 397
BstACI GRCGYC 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 235, 362
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 33, 350
BstFNI CGCG 2 cut(s) 164, 270
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 3 cut(s) 145, 214, 268
BstMBI GATC 3 cut(s) 142, 211, 265
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 2 cut(s) 53, 61
BstUI CGCG 2 cut(s) 164, 270
BstV1I GCAGC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 4 cut(s) 52, 105, 156, 360
BtsCI GGATG 2 cut(s) 33, 350
BtsI GCAGTG 3 cut(s) 15, 346, 371
BtsIMutI CAGTG 3 cut(s) 15, 346, 371
Cac8I GCNNGC 2 cut(s) 235, 362
CfoI GCGC 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 360
Cfr13I GGNCC 2 cut(s) 51, 383
CseI GACGC 1 cut(s) 259
DdeI CTNAG 1 cut(s) 173
DpnI GATC 3 cut(s) 144, 213, 267
DpnII GATC 3 cut(s) 142, 211, 265
EaeI YGGCCR 2 cut(s) 103, 358
Eam1104I CTCTTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 397
Eco130I CCWWGG 2 cut(s) 157, 386
Eco47I GGWCC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 209
EcoO109I RGGNCCY 2 cut(s) 51, 383
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 2 cut(s) 157, 386
ErhI CCWWGG 2 cut(s) 157, 386
FaiI YATR 1 cut(s) 86
FaqI GGGAC 2 cut(s) 79, 396
Fnu4HI GCNGC 3 cut(s) 59, 313, 316
FokI GGATG 2 cut(s) 40, 357
Fsp4HI GCNGC 3 cut(s) 59, 313, 316
FspBI CTAG 2 cut(s) 24, 158
GlaI GCGC 1 cut(s) 163
GluI GCNGC 3 cut(s) 59, 313, 316
GsuI CTGGAG 2 cut(s) 123, 226
HaeIII GGCC 4 cut(s) 52, 105, 156, 360
HapII CCGG 2 cut(s) 55, 361
HgaI GACGC 1 cut(s) 259
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 68
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 4 cut(s) 20, 39, 171, 217
HpaII CCGG 2 cut(s) 55, 361
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 216, 228
Hpy188III TCNNGA 3 cut(s) 43, 140, 399
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 2 cut(s) 188, 332
HpyAV CCTTC 2 cut(s) 42, 305
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 2 cut(s) 68, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 2 cut(s) 68, 249
Hsp92I GRCGYC 1 cut(s) 68
HspAI GCGC 1 cut(s) 162
KroI GCCGGC 1 cut(s) 360
KroNI GCCGGC 1 cut(s) 362
Kzo9I GATC 3 cut(s) 142, 211, 265
LmnI GCTCC 2 cut(s) 124, 142
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 18
MaeI CTAG 2 cut(s) 24, 158
MaeII ACGT 2 cut(s) 68, 249
MalI GATC 3 cut(s) 144, 213, 267
MboI GATC 3 cut(s) 142, 211, 265
MboII GAAGA 3 cut(s) 383, 386, 414
MflI RGATCY 1 cut(s) 142
MlyI GAGTC 3 cut(s) 14, 165, 226
MnlI CCTC 7 cut(s) 87, 87, 161, 181, 344, 402, 408
MroNI GCCGGC 1 cut(s) 360
MspI CCGG 2 cut(s) 55, 361
MspR9I CCNGG 2 cut(s) 55, 63
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 2 cut(s) 164, 270
MwoI GCNNNNNNNGC 1 cut(s) 58
NaeI GCCGGC 1 cut(s) 362
NciI CCSGG 1 cut(s) 55
NdeII GATC 3 cut(s) 142, 211, 265
NgoMIV GCCGGC 1 cut(s) 360
NlaIV GGNNCC 5 cut(s) 53, 138, 181, 334, 384
PctI GAATGC 1 cut(s) 235
PdiI GCCGGC 1 cut(s) 362
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 3 cut(s) 60, 314, 317
PleI GAGTC 3 cut(s) 14, 165, 225
PpsI GAGTC 3 cut(s) 14, 165, 225
PpuMI RGGWCCY 1 cut(s) 383
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 5 cut(s) 53, 138, 181, 334, 384
PspPI GGNCC 2 cut(s) 51, 383
PspPPI RGGWCCY 1 cut(s) 383
PsuI RGATCY 1 cut(s) 142
SatI GCNGC 3 cut(s) 59, 313, 316
Sau3AI GATC 3 cut(s) 142, 211, 265
Sau96I GGNCC 2 cut(s) 51, 383
SchI GAGTC 3 cut(s) 14, 165, 226
ScrFI CCNGG 2 cut(s) 55, 63
SetI ASST 8 cut(s) 71, 129, 196, 206, 225, 252, 324, 388
SfaNI GCATC 1 cut(s) 18
SinI GGWCC 1 cut(s) 383
SsiI CCGC 2 cut(s) 312, 315
SspMI CTAG 2 cut(s) 24, 158
StyD4I CCNGG 2 cut(s) 53, 61
StyI CCWWGG 2 cut(s) 157, 386
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 2 cut(s) 71, 252
TaqI TCGA 2 cut(s) 186, 298
TauI GCSGC 2 cut(s) 315, 318
TfiI GAWTC 1 cut(s) 39
TscAI CASTG 3 cut(s) 15, 346, 371
TseI GCWGC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 3 cut(s) 15, 346, 371
VpaK11BI GGWCC 1 cut(s) 383
XmaJI CCTAGG 1 cut(s) 157
XspI CTAG 2 cut(s) 24, 158
ZraI GACGTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.