Rh2BG189500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016251
Physical Location & Seq
Forward (+)
17023257 .. 17023736
480 bp
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UTR
Exon/CDS
Intron
Rh2BG189500.1

Sequence Viewer

Length: 480 bp
ATGATCAACCAGAAGCGGAAGAGGTTCAAGGTAGGGGCCATTCCCGGAAGCGGTCTCTCAAACACAAATGACGAACAAAACAAGAATATTGGAGAGCGGTCTAGAAGGGATGCCGGAAAAGCAGTGATTGTTGATGATACTCTTCCAGCCAAGGAAGATGCAAGGGAAGGCCCTTCCTTTGTGCGTAAAACTCATTCTCCAACACTTGTTAATGGTGTGGCTAATAATGTTGTGGAGGAGGTTGTTGTCCATGACAAGGTAGATGTGAAAAATAAGGTAGTAATGGAGGGACCTACTGCTCCAATTATTGATAACACTTGTGCTTCAAATATTGAGAAAGCTACTAGTCAAGCTGTTGTGCACGCTATTAATCCAATTGTTAAGCAAGCTGTTGAGGAAGCTCGAGTTCAAAACGTTCTTGTTGCTGAGGATTCTTGGATCACCAGGTTCTTGTTGCGCAGGCTATTGATAATGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.46

Weight (kDa)

9.13

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 458
AccBSI CCGCTC 1 cut(s) 97
AciI CCGC 3 cut(s) 16, 51, 97
AclI AACGTT 1 cut(s) 414
AclWI GGATC 1 cut(s) 446
AfiI CCNNNNNNNGG 2 cut(s) 50, 256
AgsI TTSAA 3 cut(s) 28, 327, 410
AhlI ACTAGT 1 cut(s) 344
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 4 cut(s) 341, 353, 389, 401
AluI AGCT 4 cut(s) 341, 353, 389, 401
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 59
Alw44I GTGCAC 1 cut(s) 359
AlwI GGATC 1 cut(s) 446
Ama87I CYCGRG 1 cut(s) 402
AoxI GGCC 2 cut(s) 36, 169
ApaLI GTGCAC 1 cut(s) 359
AseI ATTAAT 1 cut(s) 369
Asp700I GAANNNNTTC 1 cut(s) 23
AspLEI GCGC 1 cut(s) 459
AspS9I GGNCC 3 cut(s) 36, 170, 290
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 433
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 363
BbvCI CCTCAGC 1 cut(s) 426
BciT130I CCWGG 1 cut(s) 445
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 59
BcuI ACTAGT 1 cut(s) 344
BfaI CTAG 2 cut(s) 102, 345
Bme1390I CCNGG 2 cut(s) 45, 445
Bme18I GGWCC 1 cut(s) 290
BmeT110I CYCGRG 1 cut(s) 402
BmgT120I GGNCC 3 cut(s) 36, 170, 290
BmiI GGNNCC 2 cut(s) 37, 291
BmrFI CCNGG 2 cut(s) 45, 445
BmsI GCATC 2 cut(s) 100, 148
Bpu10I CCTNAGC 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 256
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 2 cut(s) 50, 256
BseMII CTCAG 1 cut(s) 417
BseRI GAGGAG 1 cut(s) 251
BseSI GKGCMC 1 cut(s) 363
BshFI GGCC 2 cut(s) 38, 171
BsiHKAI GWGCWC 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 2 cut(s) 45, 114
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 2 cut(s) 50, 256
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 303
BsnI GGCC 2 cut(s) 38, 171
Bso31I GGTCTC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 3, 438
BspACI CCGC 3 cut(s) 16, 51, 97
BspANI GGCC 2 cut(s) 38, 171
BspCNI CTCAG 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 37, 291
BspPI GGATC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 59
BsrBI CCGCTC 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 2 cut(s) 3, 438
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 445
Bst6I CTCTTC 2 cut(s) 14, 147
BstC8I GCNNGC 3 cut(s) 363, 387, 461
BstDEI CTNAG 1 cut(s) 426
BstF5I GGATG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 459
BstKTI GATC 2 cut(s) 6, 441
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 2 cut(s) 3, 438
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 445
BstSCI CCNGG 2 cut(s) 43, 443
BstSLI GKGCMC 1 cut(s) 363
BsuRI GGCC 2 cut(s) 38, 171
BtsCI GGATG 1 cut(s) 115
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 3 cut(s) 363, 387, 461
CfoI GCGC 1 cut(s) 459
Cfr13I GGNCC 3 cut(s) 36, 170, 290
CsiI ACCWGGT 1 cut(s) 443
CviAII CATG 1 cut(s) 251
CviJI RGCY 9 cut(s) 38, 149, 171, 221, 341, 353, 389, 401, 463
CviKI_1 RGCY 9 cut(s) 38, 149, 171, 221, 341, 353, 389, 401, 463
DdeI CTNAG 1 cut(s) 426
DpnI GATC 2 cut(s) 5, 440
DpnII GATC 2 cut(s) 3, 438
Eam1104I CTCTTC 2 cut(s) 14, 147
EarI CTCTTC 2 cut(s) 14, 147
Eco130I CCWWGG 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 402
EcoO109I RGGNCCY 2 cut(s) 170, 290
EcoRII CCWGG 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 254
FaiI YATR 1 cut(s) 252
FaqI GGGAC 1 cut(s) 303
FatI CATG 1 cut(s) 250
FbaI TGATCA 1 cut(s) 3
FokI GGATG 1 cut(s) 122
FspBI CTAG 2 cut(s) 102, 345
FspI TGCGCA 1 cut(s) 458
GlaI GCGC 1 cut(s) 458
HaeIII GGCC 2 cut(s) 38, 171
HapII CCGG 2 cut(s) 45, 114
HhaI GCGC 1 cut(s) 459
Hin1II CATG 1 cut(s) 254
Hin6I GCGC 1 cut(s) 457
HinP1I GCGC 1 cut(s) 457
HinfI GANTC 1 cut(s) 431
HpaII CCGG 2 cut(s) 45, 114
HphI GGTGA 1 cut(s) 433
Hpy166II GTNNAC 1 cut(s) 361
Hpy188III TCNNGA 1 cut(s) 102
Hpy8I GTNNAC 1 cut(s) 361
HpyAV CCTTC 3 cut(s) 99, 161, 183
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 2 cut(s) 161, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 426
HpySE526I ACGT 1 cut(s) 414
Hsp92II CATG 1 cut(s) 254
HspAI GCGC 1 cut(s) 457
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 438
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 7 cut(s) 23, 58, 127, 159, 430, 445, 457
LweI GCATC 2 cut(s) 100, 148
MabI ACCWGGT 1 cut(s) 443
MaeI CTAG 2 cut(s) 102, 345
MaeII ACGT 1 cut(s) 414
MalI GATC 2 cut(s) 5, 440
MbiI CCGCTC 1 cut(s) 97
MboI GATC 2 cut(s) 3, 438
MboII GAAGA 3 cut(s) 31, 134, 167
MfeI CAATTG 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 2 cut(s) 303, 375
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 6 cut(s) 15, 229, 232, 280, 388, 421
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 3 cut(s) 210, 369, 381
MspI CCGG 2 cut(s) 45, 114
MspR9I CCNGG 2 cut(s) 45, 445
MunI CAATTG 1 cut(s) 375
MvaI CCWGG 1 cut(s) 445
MwoI GCNNNNNNNGC 1 cut(s) 119
NciI CCSGG 1 cut(s) 45
NdeII GATC 2 cut(s) 3, 438
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 2 cut(s) 37, 291
NsbI TGCGCA 1 cut(s) 458
PaeR7I CTCGAG 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 431
PfoI TCCNGGA 1 cut(s) 43
PpuMI RGGWCCY 1 cut(s) 290
PshBI ATTAAT 1 cut(s) 369
Psp1406I AACGTT 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 2 cut(s) 37, 291
PspPI GGNCC 3 cut(s) 36, 170, 290
PspPPI RGGWCCY 1 cut(s) 290
PspXI VCTCGAGB 1 cut(s) 402
SaqAI TTAA 3 cut(s) 210, 369, 381
Sau3AI GATC 2 cut(s) 3, 438
Sau96I GGNCC 3 cut(s) 36, 170, 290
ScrFI CCNGG 2 cut(s) 45, 445
SduI GDGCHC 1 cut(s) 363
SexAI ACCWGGT 1 cut(s) 443
SfaNI GCATC 2 cut(s) 100, 148
Sfr274I CTCGAG 1 cut(s) 402
SinI GGWCC 1 cut(s) 290
SlaI CTCGAG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
SpeI ACTAGT 1 cut(s) 344
Sse9I AATT 2 cut(s) 303, 375
SsiI CCGC 3 cut(s) 16, 51, 97
SspI AATATT 2 cut(s) 88, 331
SspMI CTAG 2 cut(s) 102, 345
StyD4I CCNGG 2 cut(s) 43, 443
StyI CCWWGG 1 cut(s) 150
TaiI ACGT 1 cut(s) 417
TaqI TCGA 1 cut(s) 403
TasI AATT 2 cut(s) 303, 375
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 3 cut(s) 210, 369, 381
Tru9I TTAA 3 cut(s) 210, 369, 381
TscAI CASTG 1 cut(s) 129
TspRI CASTG 1 cut(s) 129
VneI GTGCAC 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 290
VspI ATTAAT 1 cut(s) 369
XbaI TCTAGA 1 cut(s) 101
XhoI CTCGAG 1 cut(s) 402
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 2 cut(s) 102, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.