Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0016251

Physical Location & Seq

Genomic Coordinates Reverse (-)

67418596 .. 67427312

Gene Structure 8717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG366600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGGCAAAGGGTGTTATTCATTTAGTTTTTCCTCAGATGGTTGTATTTCGATGATTTGGGCGAAGGGCTCCATTGCTTTGAAACCTGGAACGTTGAGACTCATGCATTGGGTACCCAATTTTTCTCCTGCTACTCAACGTCATGATCAACCAAAAGCGGAGGAGGTTCAGGGTAGGGGCCGTTCTTGGAAGCGGTCTCTCAAACACAAACGACGAACAAAACAAGTTTATGTCCCTAAGAGTATTGGAGAGGGGTCTAGAAGGGATGCCGAAAAAGCAGTCATTGTTGATGATACTCTTTCATCCAAGGAAGATGCAAGGGAAGGCCTTTCCTTTGTGTGTAAAACTCCCTTTCCAACACTTGTTAATGGTGTGGCTAATAGTGTTGTGGAGGAGGTTGTTGTCCATGACAAGGTAGATGTGCAAAATAAGGTAGTAATGGAGGGACCTACTGCTCCAATTGTTGAAAACACTTGTGCTCCAGATGTTGAGAAAGCTACTAGTCAAGCTATTGTGCACGCTATTACTCCAATTGTTGAGCAAGCTCGAGTTCAAAATGTTCTTGTTGCTGAGGATGTCTTGGATCACCAGGTTCCTGCTGTGCAGGCTATTGATAATGACTCGAATACTGGGAATGAGCTTTCTGGCAGCGATATTAAATCTAATGGCTCAAGTCTTGAGTCTTCTGTTCCAATTGAGAATTGGTATGATGAAACAGAGCGTGTATATGAGACTCAAGAGTTTACTGAGGTAATTTCCAAGGCACATCATAGGTCTATGAGGAAGGCAGCAAACACAGAGAGCCGGCAGGCTTATATTAGTCGTTCTAAGGGTGATTCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031267 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051020 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:1901564 GO:1901565 GO:1901575 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko05166 ko05203 map05166 map05203

Pfam Domains

Protein Families

Ran_BP1

Protein Analysis

281

Amino Acids

30.98

Weight (kDa)

6.26

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016251)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01561
rosa_laevigata	RLG00000015373 RLG00000034894
rosa_roxburghii	Rroxscaffold_2G00119600 Rroxscaffold_5G00360160 Rroxscaffold_7G00165270
rosa_samantha	Rh2BG189500 Rh2DG186500 Rh4AG366600 Rh4BG134000 Rh6AG502800 Rh6CG015100 Rh6CG015200 Rh6DG016300 Rh6DG016400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	112
AccB1I	GGYRCC	1 cut(s)	112
AciI	CCGC	2 cut(s)	158, 193
AclI	AACGTT	1 cut(s)	92
AclWI	GGATC	1 cut(s)	591
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgsI	TTSAA	3 cut(s)	82, 467, 554
AhlI	ACTAGT	1 cut(s)	500
AjnI	CCWGG	2 cut(s)	85, 588
AluBI	AGCT	4 cut(s)	497, 509, 545, 640
AluI	AGCT	4 cut(s)	497, 509, 545, 640
Alw21I	GWGCWC	2 cut(s)	481, 519
Alw26I	GTCTC	3 cut(s)	91, 201, 725
Alw44I	GTGCAC	1 cut(s)	515
AlwI	GGATC	1 cut(s)	591
Ama87I	CYCGRG	1 cut(s)	546
AoxI	GGCC	2 cut(s)	178, 325
ApaLI	GTGCAC	1 cut(s)	515
ApeKI	GCWGC	2 cut(s)	648, 788
ArsI	GACNNNNNNTTYG	2 cut(s)	264, 296
Asp718I	GGTACC	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	178, 446
AsuHPI	GGTGA	2 cut(s)	578, 845
AvaI	CYCGRG	1 cut(s)	546
AvaII	GGWCC	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	519
BanI	GGYRCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	675
Bbv12I	GWGCWC	2 cut(s)	481, 519
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	2 cut(s)	660, 800
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	2 cut(s)	87, 590
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	3 cut(s)	91, 201, 725
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	2 cut(s)	258, 501
BisI	GCNGC	2 cut(s)	649, 789
BlsI	GCNGC	2 cut(s)	650, 790
Bme1390I	CCNGG	2 cut(s)	87, 590
Bme18I	GGWCC	1 cut(s)	446
BmeT110I	CYCGRG	1 cut(s)	546
BmgT120I	GGNCC	2 cut(s)	178, 446
BmiI	GGNNCC	5 cut(s)	70, 114, 179, 447, 594
BmrFI	CCNGG	2 cut(s)	87, 590
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	2 cut(s)	256, 304
BmuI	ACTGGG	1 cut(s)	639
BpiI	GAAGAC	1 cut(s)	675
BpmI	CTGGAG	1 cut(s)	465
Bpu10I	CCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	3 cut(s)	655, 698, 720
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	306, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse118I	RCCGGY	1 cut(s)	804
Bse1I	ACTGG	1 cut(s)	634
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	87, 590
BseDI	CCNNGG	2 cut(s)	306, 759
BseGI	GGATG	3 cut(s)	271, 302, 580
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	3 cut(s)	48, 561, 738
BseNI	ACTGG	1 cut(s)	634
BseRI	GAGGAG	2 cut(s)	176, 407
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	2 cut(s)	660, 800
BsgI	GTGCAG	1 cut(s)	623
BshFI	GGCC	2 cut(s)	180, 327
BshNI	GGYRCC	1 cut(s)	112
BsiHKAI	GWGCWC	2 cut(s)	481, 519
BsiHKCI	CYCGRG	1 cut(s)	546
BsiSI	CCGG	1 cut(s)	805
BslFI	GGGAC	2 cut(s)	218, 459
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	3 cut(s)	91, 201, 725
BsmFI	GGGAC	2 cut(s)	218, 459
BsnI	GGCC	2 cut(s)	180, 327
Bso31I	GGTCTC	1 cut(s)	201
BsoBI	CYCGRG	1 cut(s)	546
Bsp1286I	GDGCHC	3 cut(s)	71, 481, 519
Bsp143I	GATC	2 cut(s)	145, 583
BspACI	CCGC	2 cut(s)	158, 193
BspANI	GGCC	2 cut(s)	180, 327
BspCNI	CTCAG	3 cut(s)	47, 562, 739
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	5 cut(s)	70, 114, 179, 447, 594
BspPI	GGATC	1 cut(s)	591
BspT107I	GGYRCC	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	804
BsrI	ACTGG	1 cut(s)	634
BssAI	RCCGGY	1 cut(s)	804
BssECI	CCNNGG	2 cut(s)	306, 759
BssMI	GATC	2 cut(s)	145, 583
BssT1I	CCWWGG	2 cut(s)	306, 759
Bst2UI	CCWGG	2 cut(s)	87, 590
BstC8I	GCNNGC	5 cut(s)	519, 543, 606, 806, 810
BstDEI	CTNAG	5 cut(s)	34, 237, 570, 747, 828
BstF5I	GGATG	3 cut(s)	271, 302, 580
BstKTI	GATC	2 cut(s)	148, 586
BstMAI	GTCTC	3 cut(s)	91, 201, 725
BstMBI	GATC	2 cut(s)	145, 583
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 605
BstNI	CCWGG	2 cut(s)	87, 590
BstSCI	CCNGG	2 cut(s)	85, 588
BstSLI	GKGCMC	1 cut(s)	519
BstV1I	GCAGC	2 cut(s)	660, 800
BstV2I	GAAGAC	1 cut(s)	675
BsuRI	GGCC	2 cut(s)	180, 327
BtsCI	GGATG	3 cut(s)	271, 302, 580
Cac8I	GCNNGC	5 cut(s)	519, 543, 606, 806, 810
CciI	TCATGA	1 cut(s)	142
Cfr10I	RCCGGY	1 cut(s)	804
Cfr13I	GGNCC	2 cut(s)	178, 446
CsiI	ACCWGGT	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	3 cut(s)	103, 143, 407
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	5 cut(s)	34, 237, 570, 747, 828
DpnI	GATC	2 cut(s)	147, 585
DpnII	GATC	2 cut(s)	145, 583
Eco130I	CCWWGG	2 cut(s)	306, 759
Eco147I	AGGCCT	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	446
Eco88I	CYCGRG	1 cut(s)	546
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRII	CCWGG	2 cut(s)	85, 588
EcoT14I	CCWWGG	2 cut(s)	306, 759
EcoT22I	ATGCAT	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	2 cut(s)	306, 759
FaeI	CATG	3 cut(s)	106, 146, 410
FaqI	GGGAC	2 cut(s)	218, 459
FatI	CATG	3 cut(s)	102, 142, 406
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	649, 789
FokI	GGATG	3 cut(s)	278, 289, 587
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	649, 789
FspBI	CTAG	2 cut(s)	258, 501
GluI	GCNGC	2 cut(s)	649, 789
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	180, 327
HapII	CCGG	1 cut(s)	805
Hin1II	CATG	3 cut(s)	106, 146, 410
HinfI	GANTC	5 cut(s)	99, 620, 680, 733, 836
HpaII	CCGG	1 cut(s)	805
HphI	GGTGA	2 cut(s)	578, 845
Hpy166II	GTNNAC	2 cut(s)	517, 744
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	5 cut(s)	143, 258, 482, 677, 737
Hpy8I	GTNNAC	2 cut(s)	517, 744
Hpy99I	CGWCG	1 cut(s)	216
HpyAV	CCTTC	4 cut(s)	58, 255, 317, 778
HpyCH4IV	ACGT	2 cut(s)	92, 139
HpyCH4V	TGCA	5 cut(s)	106, 317, 424, 517, 604
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 605
HpyF3I	CTNAG	5 cut(s)	34, 237, 570, 747, 828
HpySE526I	ACGT	2 cut(s)	92, 139
Hsp92II	CATG	3 cut(s)	106, 146, 410
KpnI	GGTACC	1 cut(s)	116
KroI	GCCGGC	1 cut(s)	804
KroNI	GCCGGC	1 cut(s)	806
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	145, 583
LmnI	GCTCC	3 cut(s)	74, 460, 484
Lsp1109I	GCAGC	2 cut(s)	660, 800
LweI	GCATC	2 cut(s)	256, 304
MabI	ACCWGGT	1 cut(s)	588
MaeI	CTAG	2 cut(s)	258, 501
MaeII	ACGT	2 cut(s)	92, 139
MalI	GATC	2 cut(s)	147, 585
MboI	GATC	2 cut(s)	145, 583
MboII	GAAGA	2 cut(s)	323, 675
MfeI	CAATTG	3 cut(s)	459, 531, 693
MhlI	GDGCHC	3 cut(s)	71, 481, 519
MluCI	AATT	6 cut(s)	118, 459, 531, 693, 700, 753
MlyI	GAGTC	4 cut(s)	93, 614, 689, 727
MmeI	TCCRAC	1 cut(s)	380
Mph1103I	ATGCAT	1 cut(s)	108
MroNI	GCCGGC	1 cut(s)	804
MseI	TTAA	2 cut(s)	366, 657
MspI	CCGG	1 cut(s)	805
MspR9I	CCNGG	2 cut(s)	87, 590
MunI	CAATTG	3 cut(s)	459, 531, 693
MvaI	CCWGG	2 cut(s)	87, 590
MwoI	GCNNNNNNNGC	2 cut(s)	275, 605
NaeI	GCCGGC	1 cut(s)	806
NdeII	GATC	2 cut(s)	145, 583
NgoMIV	GCCGGC	1 cut(s)	804
NlaIII	CATG	3 cut(s)	106, 146, 410
NlaIV	GGNNCC	5 cut(s)	70, 114, 179, 447, 594
NsiI	ATGCAT	1 cut(s)	108
PaeR7I	CTCGAG	1 cut(s)	546
PagI	TCATGA	1 cut(s)	142
PceI	AGGCCT	1 cut(s)	327
PdiI	GCCGGC	1 cut(s)	806
PfeI	GAWTC	1 cut(s)	836
PkrI	GCNGC	2 cut(s)	650, 790
PleI	GAGTC	4 cut(s)	93, 614, 688, 727
PpsI	GAGTC	4 cut(s)	93, 614, 688, 727
PpuMI	RGGWCCY	1 cut(s)	446
Psp1406I	AACGTT	1 cut(s)	92
Psp5II	RGGWCCY	1 cut(s)	446
Psp6I	CCWGG	2 cut(s)	85, 588
PspGI	CCWGG	2 cut(s)	85, 588
PspN4I	GGNNCC	5 cut(s)	70, 114, 179, 447, 594
PspPI	GGNCC	2 cut(s)	178, 446
PspPPI	RGGWCCY	1 cut(s)	446
PspXI	VCTCGAGB	1 cut(s)	546
PsrI	GAACNNNNNNTAC	2 cut(s)	166, 198
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	366, 657
SatI	GCNGC	2 cut(s)	649, 789
Sau3AI	GATC	2 cut(s)	145, 583
Sau96I	GGNCC	2 cut(s)	178, 446
SchI	GAGTC	4 cut(s)	93, 614, 689, 727
ScrFI	CCNGG	2 cut(s)	87, 590
SduI	GDGCHC	3 cut(s)	71, 481, 519
SexAI	ACCWGGT	1 cut(s)	588
SfaNI	GCATC	2 cut(s)	256, 304
Sfr274I	CTCGAG	1 cut(s)	546
SinI	GGWCC	1 cut(s)	446
SlaI	CTCGAG	1 cut(s)	546
SmlI	CTYRAG	4 cut(s)	546, 670, 677, 735
SmoI	CTYRAG	4 cut(s)	546, 670, 677, 735
SpeI	ACTAGT	1 cut(s)	500
Sse9I	AATT	6 cut(s)	118, 459, 531, 693, 700, 753
SseBI	AGGCCT	1 cut(s)	327
SsiI	CCGC	2 cut(s)	158, 193
SspMI	CTAG	2 cut(s)	258, 501
StuI	AGGCCT	1 cut(s)	327
StyD4I	CCNGG	2 cut(s)	85, 588
StyI	CCWWGG	2 cut(s)	306, 759
TaiI	ACGT	2 cut(s)	95, 142
TaqI	TCGA	3 cut(s)	50, 547, 623
TasI	AATT	6 cut(s)	118, 459, 531, 693, 700, 753
TfiI	GAWTC	1 cut(s)	836
Tru1I	TTAA	2 cut(s)	366, 657
Tru9I	TTAA	2 cut(s)	366, 657
TseI	GCWGC	2 cut(s)	648, 788
TspDTI	ATGAA	3 cut(s)	9, 291, 726
VneI	GTGCAC	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	446
XbaI	TCTAGA	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	699
XhoI	CTCGAG	1 cut(s)	546
XspI	CTAG	2 cut(s)	258, 501
Zsp2I	ATGCAT	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.