Rh6CG015200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0016251
Physical Location & Seq
Forward (+)
1633665 .. 1636496
2832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG015200.1

Sequence Viewer

Length: 438 bp
ATGTGGCTCCAGATCTGCTTCACGGCCTCTGCGCGAGAGGACTCAGGGGTGCCGCCGAGGAAGCTGCCGAGAGCTGGAGAGATCGGAGTCGGCTTCAGAATGCCAGCGTTCCTGTTGACGTTTCTCTTGGGCTTGATCGCGTCGGCGTCTGCTTTGGGCTTCGCCTTCGCCTTCGATTTTGGTGCGGCGGCGGCGACCTTGACGGCGGTTCCAGCAGTGGATGTGGAGGACTTGGCCGGCAGTGGGAAGAAGAACGGGGACCTTGGTGGTGGTAACGACCATGATGATGGTGAAGTCAGTGAAGATGGTAATGTTGATCAGGCCAATGGAGATGTTGAAGATGATAATGAATACATTAACAAAGTAGAAGGTAATGATCAGGATAAAGAAATGTATGATGAAGGATATCCAGATTTGATGCGGAGGACGTTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.45

Weight (kDa)

4.11

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 49
AccII CGCG 2 cut(s) 34, 140
AciI CCGC 6 cut(s) 53, 185, 188, 191, 206, 421
AcoI YGGCCR 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 146
AfiI CCNNNNNNNGG 2 cut(s) 74, 243
AgsI TTSAA 1 cut(s) 338
AluBI AGCT 2 cut(s) 64, 74
AluI AGCT 2 cut(s) 64, 74
AoxI GGCC 3 cut(s) 24, 234, 321
ApeKI GCWGC 1 cut(s) 64
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 302
AvaII GGWCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 51
BccI CCATC 2 cut(s) 281, 299
BceAI ACGGC 2 cut(s) 39, 219
BcgI CGANNNNNNTGC 4 cut(s) 46, 80, 164, 198
BclI TGATCA 2 cut(s) 316, 376
BglII AGATCT 1 cut(s) 12
BisI GCNGC 5 cut(s) 53, 65, 186, 189, 192
BlsI GCNGC 5 cut(s) 54, 66, 187, 190, 193
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 4 cut(s) 8, 51, 210, 260
BmsI GCATC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 56, 262
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 243
Bse118I RCCGGY 1 cut(s) 236
BseDI CCNNGG 2 cut(s) 56, 262
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 74, 243
BseMII CTCAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 51
Bsh1236I CGCG 2 cut(s) 34, 140
BshFI GGCC 3 cut(s) 26, 236, 323
BshNI GGYRCC 1 cut(s) 49
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 74, 243
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 3 cut(s) 26, 236, 323
Bsp143I GATC 5 cut(s) 12, 81, 135, 316, 376
BspACI CCGC 6 cut(s) 53, 185, 188, 191, 206, 421
BspANI GGCC 3 cut(s) 26, 236, 323
BspCNI CTCAG 1 cut(s) 56
BspFNI CGCG 2 cut(s) 34, 140
BspLI GGNNCC 4 cut(s) 8, 51, 210, 260
BspT107I GGYRCC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 56, 262
BssMI GATC 5 cut(s) 12, 81, 135, 316, 376
BssNI GRCGYC 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 262
BstACI GRCGYC 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 105, 238
BstDEI CTNAG 1 cut(s) 43
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 2 cut(s) 34, 140
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 5 cut(s) 15, 84, 138, 319, 379
BstMBI GATC 5 cut(s) 12, 81, 135, 316, 376
BstMWI GCNNNNNNNGC 3 cut(s) 61, 191, 212
BstUI CGCG 2 cut(s) 34, 140
BstV1I GCAGC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 287
BstYI RGATCY 1 cut(s) 12
BsuRI GGCC 3 cut(s) 26, 236, 323
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 2 cut(s) 222, 247
BtsIMutI CAGTG 3 cut(s) 222, 247, 304
Cac8I GCNNGC 2 cut(s) 105, 238
CfoI GCGC 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 259
CseI GACGC 2 cut(s) 129, 135
CviAII CATG 1 cut(s) 281
CviJI RGCY 9 cut(s) 7, 26, 64, 74, 93, 132, 159, 236, 323
CviKI_1 RGCY 9 cut(s) 7, 26, 64, 74, 93, 132, 159, 236, 323
DdeI CTNAG 1 cut(s) 43
DpnI GATC 5 cut(s) 14, 83, 137, 318, 378
DpnII GATC 5 cut(s) 12, 81, 135, 316, 376
EaeI YGGCCR 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 262
Eco32I GATATC 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 259
EcoRV GATATC 1 cut(s) 407
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 1 cut(s) 284
FaiI YATR 2 cut(s) 282, 396
FaqI GGGAC 1 cut(s) 272
FatI CATG 1 cut(s) 280
FbaI TGATCA 2 cut(s) 316, 376
Fnu4HI GCNGC 5 cut(s) 53, 65, 186, 189, 192
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 5 cut(s) 53, 65, 186, 189, 192
GlaI GCGC 1 cut(s) 33
GluI GCNGC 5 cut(s) 53, 65, 186, 189, 192
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 3 cut(s) 26, 236, 323
HapII CCGG 1 cut(s) 237
HgaI GACGC 2 cut(s) 129, 135
HhaI GCGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 1 cut(s) 284
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 2 cut(s) 41, 87
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 2 cut(s) 86, 98
Hpy188III TCNNGA 3 cut(s) 10, 380, 410
Hpy8I GTNNAC 1 cut(s) 117
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 4 cut(s) 175, 181, 362, 395
HpyCH4IV ACGT 2 cut(s) 119, 428
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 191, 212
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 2 cut(s) 119, 428
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 1 cut(s) 284
HspAI GCGC 1 cut(s) 32
KroI GCCGGC 1 cut(s) 236
KroNI GCCGGC 1 cut(s) 238
Ksp22I TGATCA 2 cut(s) 316, 376
Kzo9I GATC 5 cut(s) 12, 81, 135, 316, 376
LmnI GCTCC 1 cut(s) 12
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 1 cut(s) 408
MaeII ACGT 2 cut(s) 119, 428
MaeIII GTNAC 1 cut(s) 272
MalI GATC 5 cut(s) 14, 83, 137, 318, 378
MboI GATC 5 cut(s) 12, 81, 135, 316, 376
MboII GAAGA 4 cut(s) 259, 262, 314, 350
MflI RGATCY 1 cut(s) 12
MlyI GAGTC 2 cut(s) 35, 96
MnlI CCTC 5 cut(s) 31, 37, 51, 220, 417
MroNI GCCGGC 1 cut(s) 236
MseI TTAA 2 cut(s) 357, 436
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 105
MvnI CGCG 2 cut(s) 34, 140
MwoI GCNNNNNNNGC 3 cut(s) 61, 191, 212
NaeI GCCGGC 1 cut(s) 238
NdeII GATC 5 cut(s) 12, 81, 135, 316, 376
NgoMIV GCCGGC 1 cut(s) 236
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 4 cut(s) 8, 51, 210, 260
NmeAIII GCCGAG 2 cut(s) 81, 93
PctI GAATGC 1 cut(s) 105
PdiI GCCGGC 1 cut(s) 238
PkrI GCNGC 5 cut(s) 54, 66, 187, 190, 193
PleI GAGTC 2 cut(s) 35, 95
PpsI GAGTC 2 cut(s) 35, 95
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
PspN4I GGNNCC 4 cut(s) 8, 51, 210, 260
PspPI GGNCC 1 cut(s) 259
PspPPI RGGWCCY 1 cut(s) 259
PsuI RGATCY 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 2 cut(s) 357, 436
SatI GCNGC 5 cut(s) 53, 65, 186, 189, 192
Sau3AI GATC 5 cut(s) 12, 81, 135, 316, 376
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 2 cut(s) 35, 96
SetI ASST 7 cut(s) 66, 76, 122, 200, 264, 373, 431
SfaNI GCATC 1 cut(s) 408
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 285
SsiI CCGC 6 cut(s) 53, 185, 188, 191, 206, 421
StyI CCWWGG 1 cut(s) 262
TaiI ACGT 2 cut(s) 122, 431
TaqI TCGA 1 cut(s) 174
TauI GCSGC 4 cut(s) 55, 188, 191, 194
Tru1I TTAA 2 cut(s) 357, 436
Tru9I TTAA 2 cut(s) 357, 436
TscAI CASTG 3 cut(s) 222, 247, 304
TseI GCWGC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 363, 414
TspRI CASTG 3 cut(s) 222, 247, 304
VpaK11BI GGWCC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.