Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006280

Physical Location & Seq

Genomic Coordinates Reverse (-)

30010332 .. 30013847

Gene Structure 3516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018458

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAAGCAGGAAGAAGCAGCAGCAGGAAGCCTTACTTGGTGGTTATTCTGATACAAACAATATATGCAGTCATGTTCTTGCTCTCCAAGGCTGCATTCAATGGCGGCATGAACACTTTCGTATTTGTTTTTTATAGACAGGCTGCTGCAACTCTCTTTCTAGTTCCTCTTGCTCTTTTTCTCGAATGGAAAACTGCGCCACCGCTCTCTTTCATGACCTTCTGCAAGATCTTTCTTCTTTCATTTTTTGGGATTACTTTAAGCTTGGACATCTATGGCGTCGCCCTTGTTTATACCTCAGCGACTTTGGCTGCTGCAATCACAAACTGCCTTCCCGTCATAACTTTCTTCTTGGCACTTCTACTCAGGATGGAAGTATTGAAGCCAAGGACAACCTCAGGTTTGGCTAAGCTTGTAGGCATGCTATTTTGCACGGCAGGGGCGGTGACCCTTGCCATATACAAAGGTCCCCATTTCAATCTCCTGGGGCATCATAGTCTCTTACATCACCATAATATCGAAGAACATGAAGGCCATGTTCCTTCTGGCAAAACATGGATAAAGGGTTGCTTCCTCATGCTGATGTCCAACACCTTTTGGGGCTTGTGGCTTGTTTTGCAGGCACGAGTTATGAAAAGCTATCCCTCAAAGCTTCTCTTTACTACTCTACAATGCTTTCTAAGTTCAATCCAGACGTTTGTCATTGCCATCGCTGTTGAGAGAAACCCCTATGAATGGAAGCTCGGATGGAATCTCAAACTTGTTGCCATAGCTTACTGCGGAATTGTGGTGACCGGCATTACTTACCATTTACAAGCATGGGTATTGGAGAAGAAGGATCCGGTTTTCTTGGCTATGTCCACACCATTGGCTTTGGTCATCACACTCTTTGCTTCTGCAATTCTCCTGGGAGAAATCATTAGTCTGGGAAGTATCTTGGGTGGGCTCTTATTGGTTGGAGGACTTTATAGTGTTTTATGGGCGAAGAGCAGAGAGCAGAGTATAGTTGATGAAAGTTGCTTAAGAGCTGAAGTTGTCAGAGACTCCTCAAAACTAAAAGAAACAGAGGACGACTTTGTTTCTGTAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

364

Amino Acids

40.19

Weight (kDa)

8.99

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	11 - 136	1e-10	EamA-like transporter family
EamA	PF00892	188 - 326	1.4e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64700 AT5G64700
fragaria_vesca	FvH4_1g23640 FvH4_1g23640
prunus_persica	Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0119241
rosa_laevigata	RLG00000018458 RLG00000034036
rosa_multiflora	Rmu_sc0001140.1_g000010 Rmu_sc0004760.1_g000012 Rmu_sc0007618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039430 Rroxscaffold_2G00124410
rosa_rugosa	Rorug02G0221200 Rorug05G0190500.1
rosa_samantha	Rh2AG279200 Rh2BG290000 Rh2DG285100 Rh2DG304100 Rh5AG276500 Rh5BG281500 Rh5CG313500 Rh5DG289500
rosa_wichuraiana	Rw2G022200 Rw5G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	205
AciI	CCGC	4 cut(s)	105, 203, 443, 780
AclWI	GGATC	2 cut(s)	833, 846
AcuI	CTGAAG	1 cut(s)	1050
AcyI	GRCGYC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	735
AflII	CTTAAG	1 cut(s)	1021
AgsI	TTSAA	4 cut(s)	100, 382, 478, 687
AjnI	CCWGG	2 cut(s)	483, 906
AjuI	GAANNNNNNNTTGG	4 cut(s)	20, 52, 80, 112
AluBI	AGCT	7 cut(s)	264, 412, 639, 652, 742, 773, 1028
AluI	AGCT	7 cut(s)	264, 412, 639, 652, 742, 773, 1028
Alw26I	GTCTC	2 cut(s)	503, 1035
AlwI	GGATC	2 cut(s)	833, 846
AoxI	GGCC	1 cut(s)	532
ApeKI	GCWGC	7 cut(s)	18, 21, 92, 143, 146, 311, 314
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	3 cut(s)	457, 500, 802
AvaII	GGWCC	1 cut(s)	467
AxyI	CCTNAGG	1 cut(s)	397
BamHI	GGATCC	1 cut(s)	838
BanII	GRGCYC	1 cut(s)	948
BauI	CACGAG	1 cut(s)	624
BbvCI	CCTCAGC	1 cut(s)	298
BbvI	GCAGC	7 cut(s)	30, 33, 79, 130, 133, 298, 301
BccI	CCATC	3 cut(s)	364, 716, 741
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	2 cut(s)	485, 908
BcoDI	GTCTC	2 cut(s)	503, 1035
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	1083
BfrI	CTTAAG	1 cut(s)	1021
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	8 cut(s)	19, 22, 93, 106, 144, 147, 312, 315
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	8 cut(s)	20, 23, 94, 107, 145, 148, 313, 316
Bme1390I	CCNGG	2 cut(s)	485, 908
Bme18I	GGWCC	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	469, 840
BmrFI	CCNGG	2 cut(s)	485, 908
BmsI	GCATC	1 cut(s)	499
BoxI	GACNNNNGTC	1 cut(s)	698
Bpu10I	CCTNAGC	1 cut(s)	298
Bpu1102I	GCTNAGC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	4 cut(s)	87, 386, 484, 907
BsaWI	WCCGGW	1 cut(s)	841
Bsc4I	CCNNNNNNNGG	1 cut(s)	735
Bse118I	RCCGGY	1 cut(s)	794
Bse21I	CCTNAGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	702
BseBI	CCWGG	2 cut(s)	485, 908
BseDI	CCNNGG	4 cut(s)	87, 386, 484, 907
BseGI	GGATG	2 cut(s)	375, 752
BseLI	CCNNNNNNNGG	1 cut(s)	735
BseMI	GCAATG	1 cut(s)	702
BseMII	CTCAG	3 cut(s)	312, 379, 411
BseRI	GAGGAG	1 cut(s)	1036
BseXI	GCAGC	7 cut(s)	30, 33, 79, 130, 133, 298, 301
BshFI	GGCC	1 cut(s)	534
BsiSI	CCGG	2 cut(s)	795, 842
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	735
BsmAI	GTCTC	2 cut(s)	503, 1035
BsmFI	GGGAC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	534
Bsp1286I	GDGCHC	1 cut(s)	948
Bsp143I	GATC	2 cut(s)	228, 838
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	4 cut(s)	105, 203, 443, 780
BspANI	GGCC	1 cut(s)	534
BspCNI	CTCAG	3 cut(s)	311, 378, 410
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	469, 840
BspPI	GGATC	2 cut(s)	833, 846
BspQI	GCTCTTC	1 cut(s)	980
BspTI	CTTAAG	1 cut(s)	1021
BsrBI	CCGCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	702
BsrFI	RCCGGY	1 cut(s)	794
BssAI	RCCGGY	1 cut(s)	794
BssECI	CCNNGG	4 cut(s)	87, 386, 484, 907
BssMI	GATC	2 cut(s)	228, 838
BssNI	GRCGYC	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	624
BssT1I	CCWWGG	2 cut(s)	87, 386
Bst2BI	CACGAG	1 cut(s)	624
Bst2UI	CCWGG	2 cut(s)	485, 908
Bst6I	CTCTTC	1 cut(s)	980
BstACI	GRCGYC	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	1021
BstC8I	GCNNGC	2 cut(s)	422, 621
BstDEI	CTNAG	5 cut(s)	298, 365, 397, 408, 680
BstEII	GGTNACC	2 cut(s)	445, 790
BstF5I	GGATG	2 cut(s)	375, 752
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	2 cut(s)	231, 841
BstMAI	GTCTC	2 cut(s)	503, 1035
BstMBI	GATC	2 cut(s)	228, 838
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 616
BstNI	CCWGG	2 cut(s)	485, 908
BstNSI	RCATGY	1 cut(s)	424
BstPAI	GACNNNNGTC	1 cut(s)	698
BstPI	GGTNACC	2 cut(s)	445, 790
BstSCI	CCNGG	2 cut(s)	483, 906
BstSFI	CTRYAG	1 cut(s)	1083
BstV1I	GCAGC	7 cut(s)	30, 33, 79, 130, 133, 298, 301
BstX2I	RGATCY	2 cut(s)	228, 838
BstXI	CCANNNNNNTGG	1 cut(s)	868
BstYI	RGATCY	2 cut(s)	228, 838
Bsu36I	CCTNAGG	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	534
BtgZI	GCGATG	1 cut(s)	694
BtsCI	GGATG	2 cut(s)	375, 752
Cac8I	GCNNGC	2 cut(s)	422, 621
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	794
Cfr13I	GGNCC	1 cut(s)	467
CseI	GACGC	1 cut(s)	268
CviAII	CATG	9 cut(s)	73, 109, 214, 421, 527, 536, 555, 577, 819
DdeI	CTNAG	5 cut(s)	298, 365, 397, 408, 680
DpnI	GATC	2 cut(s)	230, 840
DpnII	GATC	2 cut(s)	228, 838
Eam1104I	CTCTTC	1 cut(s)	980
EarI	CTCTTC	1 cut(s)	980
Eco130I	CCWWGG	2 cut(s)	87, 386
Eco24I	GRGCYC	1 cut(s)	948
Eco47I	GGWCC	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	1050
Eco81I	CCTNAGG	1 cut(s)	397
Eco91I	GGTNACC	2 cut(s)	445, 790
EcoO109I	RGGNCCY	1 cut(s)	467
EcoO65I	GGTNACC	2 cut(s)	445, 790
EcoRII	CCWGG	2 cut(s)	483, 906
EcoT14I	CCWWGG	2 cut(s)	87, 386
EcoT38I	GRGCYC	1 cut(s)	948
ErhI	CCWWGG	2 cut(s)	87, 386
FaeI	CATG	9 cut(s)	76, 112, 217, 424, 530, 539, 558, 580, 822
FalI	AAGNNNNNCTT	6 cut(s)	20, 52, 554, 586, 641, 673
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	9 cut(s)	72, 108, 213, 420, 526, 535, 554, 576, 818
Fnu4HI	GCNGC	8 cut(s)	19, 22, 93, 106, 144, 147, 312, 315
FokI	GGATG	2 cut(s)	382, 759
FriOI	GRGCYC	1 cut(s)	948
Fsp4HI	GCNGC	8 cut(s)	19, 22, 93, 106, 144, 147, 312, 315
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	8 cut(s)	19, 22, 93, 106, 144, 147, 312, 315
HaeIII	GGCC	1 cut(s)	534
HapII	CCGG	2 cut(s)	795, 842
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	9 cut(s)	76, 112, 217, 424, 530, 539, 558, 580, 822
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HindIII	AAGCTT	3 cut(s)	262, 410, 650
HinfI	GANTC	2 cut(s)	751, 1043
HpaII	CCGG	2 cut(s)	795, 842
HphI	GGTGA	3 cut(s)	457, 500, 802
Hpy166II	GTNNAC	1 cut(s)	861
Hpy188I	TCNGA	3 cut(s)	51, 746, 1040
Hpy188III	TCNNGA	4 cut(s)	182, 214, 367, 691
Hpy8I	GTNNAC	1 cut(s)	861
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	5 cut(s)	229, 341, 524, 552, 829
HpyCH4IV	ACGT	1 cut(s)	695
HpyCH4V	TGCA	8 cut(s)	68, 95, 149, 225, 317, 432, 619, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 616
HpyF3I	CTNAG	5 cut(s)	298, 365, 397, 408, 680
HpySE526I	ACGT	1 cut(s)	695
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	9 cut(s)	76, 112, 217, 424, 530, 539, 558, 580, 822
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	228, 838
LguI	GCTCTTC	1 cut(s)	980
Lsp1109I	GCAGC	7 cut(s)	30, 33, 79, 130, 133, 298, 301
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	695
MaeIII	GTNAC	2 cut(s)	445, 790
MalI	GATC	2 cut(s)	230, 840
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	2 cut(s)	228, 838
MboII	GAAGA	6 cut(s)	24, 227, 340, 533, 844, 997
MflI	RGATCY	2 cut(s)	228, 838
MhlI	GDGCHC	1 cut(s)	948
MluCI	AATT	2 cut(s)	783, 900
MlyI	GAGTC	1 cut(s)	1037
MmeI	TCCRAC	2 cut(s)	612, 937
MnlI	CCTC	8 cut(s)	177, 307, 406, 584, 655, 953, 1057, 1060
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	2 cut(s)	260, 1022
MslI	CAYNNNNRTG	1 cut(s)	581
MspCI	CTTAAG	1 cut(s)	1021
MspI	CCGG	2 cut(s)	795, 842
MspR9I	CCNGG	2 cut(s)	485, 908
Mva1269I	GAATGC	1 cut(s)	95
MvaI	CCWGG	2 cut(s)	485, 908
MwoI	GCNNNNNNNGC	2 cut(s)	308, 616
NdeII	GATC	2 cut(s)	228, 838
NlaIII	CATG	9 cut(s)	76, 112, 217, 424, 530, 539, 558, 580, 822
NlaIV	GGNNCC	2 cut(s)	469, 840
NmuCI	GTSAC	2 cut(s)	445, 790
NspI	RCATGY	1 cut(s)	424
PaeI	GCATGC	1 cut(s)	424
PagI	TCATGA	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	980
PctI	GAATGC	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	751
PkrI	GCNGC	8 cut(s)	20, 23, 94, 107, 145, 148, 313, 316
PleI	GAGTC	1 cut(s)	1037
PpsI	GAGTC	1 cut(s)	1037
PpuMI	RGGWCCY	1 cut(s)	467
PshAI	GACNNNNGTC	1 cut(s)	698
Psp5II	RGGWCCY	1 cut(s)	467
Psp6I	CCWGG	2 cut(s)	483, 906
PspEI	GGTNACC	2 cut(s)	445, 790
PspGI	CCWGG	2 cut(s)	483, 906
PspN4I	GGNNCC	2 cut(s)	469, 840
PspPI	GGNCC	1 cut(s)	467
PspPPI	RGGWCCY	1 cut(s)	467
PsuI	RGATCY	2 cut(s)	228, 838
RseI	CAYNNNNRTG	1 cut(s)	581
SapI	GCTCTTC	1 cut(s)	980
SaqAI	TTAA	2 cut(s)	260, 1022
SatI	GCNGC	8 cut(s)	19, 22, 93, 106, 144, 147, 312, 315
Sau3AI	GATC	2 cut(s)	228, 838
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	1 cut(s)	1037
ScrFI	CCNGG	2 cut(s)	485, 908
SduI	GDGCHC	1 cut(s)	948
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	1083
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	581
SmlI	CTYRAG	1 cut(s)	1021
SmoI	CTYRAG	1 cut(s)	1021
SphI	GCATGC	1 cut(s)	424
Sse9I	AATT	2 cut(s)	783, 900
SsiI	CCGC	4 cut(s)	105, 203, 443, 780
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	2 cut(s)	483, 906
StyI	CCWWGG	2 cut(s)	87, 386
TaiI	ACGT	1 cut(s)	698
TaqI	TCGA	2 cut(s)	183, 519
TasI	AATT	2 cut(s)	783, 900
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	751
Tru1I	TTAA	2 cut(s)	260, 1022
Tru9I	TTAA	2 cut(s)	260, 1022
TseFI	GTSAC	2 cut(s)	445, 790
TseI	GCWGC	7 cut(s)	18, 21, 92, 143, 146, 311, 314
Tsp45I	GTSAC	2 cut(s)	445, 790
TspDTI	ATGAA	7 cut(s)	125, 202, 231, 543, 647, 747, 1026
Vha464I	CTTAAG	1 cut(s)	1021
VpaK11BI	GGWCC	1 cut(s)	467
XceI	RCATGY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.