Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006280

Physical Location & Seq

Genomic Coordinates Reverse (-)

36524560 .. 36529644

Gene Structure 5085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG304100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCAGCAGGAAGAAGCAGCAGCAGGAAGCCTTACTTGGTTGTTATTCTGATACAAACAATATATGCAGGCATGTTCTTGCTCTCCAAGGCTGCATTCAATGGCGGCATGAACACTTTTGTATTTGTTTTTTATAGACAGGCTGCTGCAACTCTCTTTCTAGTTCCTTTTGCTCTTTTTCTCGAATGGAAAACTGCGCCACCGCTGTCTTTCATGACCTTCTGCAAGATCTTTCTTCTTTCATTTTTTGGGATTACTTTAAGCTTGGATATCTATGGCGTCGCCCTTGTTTATACCTCAGCGACTTTGGCTGCTGCAATCACAAACTGCCTGCCTGTCATAACTTTCTTCTTGGCACTTCTACTCAGGATGGAAGTATTGAAGCCAAGGACAACCTCAGGTTTGGCTAAGCTTGTAGGCATATTATTTTGCACGGCAGGGGCGGTGACCCTTGCCGTATACAAAGGTCCCCATTTCAATCTCCTGGGGCATCATAATCTCTTACATCATATCGAAGAACATGAAGGCCATGTTCCTTCTGGCAAAACATGGATAAAGGGTTGCTTCCTCATGCTGATGTCCAACACCTTTTGGGGCTTGTGGCTTGTTTTGCAGGCGGGAGTTATGAAAAGCTACCCCTCAAAGCTTCTCTTTACTACTCTACAATGCTTTCTAAGTTCAATCCAGACGTTTGTCATTGCCATCGCTGTTGAGAGAAACCCCTATGAATGGAAGCTCGGATGGAATCTCAAACTTGTTGCCATAGCTTACTGCGGAATTGTGGTGACCGGCATTACTTACCATTTACAAGCATGGGTAATGGAGAAGAAGGACCCGGTTTTCTTGGCTATGTCCACACCATTGGCTTTGGTCATCACACTCTTTGCTTCTGCAATTCTCCTGGGAGAAATCATTAGTCTGGGAAGTATCTTGGGTGGGCTCTTATTGGTTGGAGGGCTTTATAATGTTTTATGGGCGAAGAGCAGAGAGCAGAGTATAGTTGATGAAAGTTGCTTAAGAGCTGAAGTTGTCAAAGACTCCTCAAAACTGAAAGAAACAGAGGACTTTGTTTCTGTAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

360

Amino Acids

39.67

Weight (kDa)

9.08

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	11 - 137	5.5e-11	EamA-like transporter family
EamA	PF00892	186 - 323	1.3e-13	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64700 AT5G64700
fragaria_vesca	FvH4_1g23640 FvH4_1g23640
prunus_persica	Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0119241
rosa_laevigata	RLG00000018458 RLG00000034036
rosa_multiflora	Rmu_sc0001140.1_g000010 Rmu_sc0004760.1_g000012 Rmu_sc0007618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039430 Rroxscaffold_2G00124410
rosa_rugosa	Rorug02G0221200 Rorug05G0190500.1
rosa_samantha	Rh2AG279200 Rh2BG290000 Rh2DG285100 Rh2DG304100 Rh5AG276500 Rh5BG281500 Rh5CG313500 Rh5DG289500
rosa_wichuraiana	Rw2G022200 Rw5G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	963
AccI	GTMKAC	1 cut(s)	459
AciI	CCGC	5 cut(s)	105, 203, 443, 617, 774
AcuI	CTGAAG	1 cut(s)	1044
AcyI	GRCGYC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	729
AflII	CTTAAG	1 cut(s)	1015
AgsI	TTSAA	4 cut(s)	100, 382, 478, 681
AjnI	CCWGG	2 cut(s)	483, 900
AjuI	GAANNNNNNNTTGG	4 cut(s)	20, 52, 80, 112
AluBI	AGCT	7 cut(s)	264, 412, 633, 646, 736, 767, 1022
AluI	AGCT	7 cut(s)	264, 412, 633, 646, 736, 767, 1022
AoxI	GGCC	1 cut(s)	526
ApeKI	GCWGC	8 cut(s)	5, 18, 21, 92, 143, 146, 311, 314
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	467, 832
AsuC2I	CCSGG	1 cut(s)	836
AsuHPI	GGTGA	2 cut(s)	457, 796
AvaII	GGWCC	2 cut(s)	467, 832
AxyI	CCTNAGG	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	942
BbvCI	CCTCAGC	1 cut(s)	298
BbvI	GCAGC	8 cut(s)	17, 30, 33, 79, 130, 133, 298, 301
BccI	CCATC	3 cut(s)	364, 710, 735
BceAI	ACGGC	2 cut(s)	440, 450
BciT130I	CCWGG	2 cut(s)	485, 902
BcnI	CCSGG	1 cut(s)	836
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	1074
BfrI	CTTAAG	1 cut(s)	1015
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	9 cut(s)	6, 19, 22, 93, 106, 144, 147, 312, 315
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	9 cut(s)	7, 20, 23, 94, 107, 145, 148, 313, 316
Bme1390I	CCNGG	3 cut(s)	485, 836, 902
Bme18I	GGWCC	2 cut(s)	467, 832
BmgT120I	GGNCC	2 cut(s)	467, 832
BmiI	GGNNCC	2 cut(s)	469, 834
BmrFI	CCNGG	3 cut(s)	485, 836, 902
BmsI	GCATC	1 cut(s)	499
BoxI	GACNNNNGTC	1 cut(s)	692
Bpu10I	CCTNAGC	1 cut(s)	298
Bpu1102I	GCTNAGC	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	836
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	4 cut(s)	87, 386, 484, 901
Bsc4I	CCNNNNNNNGG	1 cut(s)	729
Bse118I	RCCGGY	1 cut(s)	788
Bse21I	CCTNAGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	696
BseBI	CCWGG	2 cut(s)	485, 902
BseDI	CCNNGG	4 cut(s)	87, 386, 484, 901
BseGI	GGATG	2 cut(s)	375, 746
BseLI	CCNNNNNNNGG	1 cut(s)	729
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	3 cut(s)	312, 379, 411
BseRI	GAGGAG	1 cut(s)	1030
BseXI	GCAGC	8 cut(s)	17, 30, 33, 79, 130, 133, 298, 301
BshFI	GGCC	1 cut(s)	528
BsiSI	CCGG	2 cut(s)	789, 836
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	729
BsmFI	GGGAC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	528
Bsp1286I	GDGCHC	1 cut(s)	942
Bsp143I	GATC	1 cut(s)	228
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	5 cut(s)	105, 203, 443, 617, 774
BspANI	GGCC	1 cut(s)	528
BspCNI	CTCAG	3 cut(s)	311, 378, 410
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	469, 834
BspQI	GCTCTTC	1 cut(s)	974
BspTI	CTTAAG	1 cut(s)	1015
BsrDI	GCAATG	1 cut(s)	696
BsrFI	RCCGGY	1 cut(s)	788
BssAI	RCCGGY	1 cut(s)	788
BssECI	CCNNGG	4 cut(s)	87, 386, 484, 901
BssMI	GATC	1 cut(s)	228
BssNAI	GTATAC	1 cut(s)	460
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	2 cut(s)	87, 386
Bst1107I	GTATAC	1 cut(s)	460
Bst2UI	CCWGG	2 cut(s)	485, 902
Bst6I	CTCTTC	1 cut(s)	974
BstACI	GRCGYC	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	1015
BstC8I	GCNNGC	3 cut(s)	70, 332, 615
BstDEI	CTNAG	5 cut(s)	298, 365, 397, 408, 674
BstEII	GGTNACC	2 cut(s)	445, 784
BstF5I	GGATG	2 cut(s)	375, 746
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 610
BstNI	CCWGG	2 cut(s)	485, 902
BstNSI	RCATGY	1 cut(s)	76
BstPAI	GACNNNNGTC	1 cut(s)	692
BstPI	GGTNACC	2 cut(s)	445, 784
BstSCI	CCNGG	3 cut(s)	483, 834, 900
BstSFI	CTRYAG	1 cut(s)	1074
BstV1I	GCAGC	8 cut(s)	17, 30, 33, 79, 130, 133, 298, 301
BstX2I	RGATCY	1 cut(s)	228
BstXI	CCANNNNNNTGG	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	228
BstZ17I	GTATAC	1 cut(s)	460
Bsu36I	CCTNAGG	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	528
BtgZI	GCGATG	1 cut(s)	688
BtsCI	GGATG	2 cut(s)	375, 746
Cac8I	GCNNGC	3 cut(s)	70, 332, 615
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	788
Cfr13I	GGNCC	2 cut(s)	467, 832
CseI	GACGC	1 cut(s)	268
CviAII	CATG	8 cut(s)	73, 109, 214, 521, 530, 549, 571, 813
DdeI	CTNAG	5 cut(s)	298, 365, 397, 408, 674
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	974
EarI	CTCTTC	1 cut(s)	974
Eco130I	CCWWGG	2 cut(s)	87, 386
Eco24I	GRGCYC	1 cut(s)	942
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	467, 832
Eco57I	CTGAAG	1 cut(s)	1044
Eco81I	CCTNAGG	1 cut(s)	397
Eco91I	GGTNACC	2 cut(s)	445, 784
EcoO109I	RGGNCCY	2 cut(s)	467, 832
EcoO65I	GGTNACC	2 cut(s)	445, 784
EcoRII	CCWGG	2 cut(s)	483, 900
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	2 cut(s)	87, 386
EcoT38I	GRGCYC	1 cut(s)	942
ErhI	CCWWGG	2 cut(s)	87, 386
FaeI	CATG	8 cut(s)	76, 112, 217, 524, 533, 552, 574, 816
FalI	AAGNNNNNCTT	6 cut(s)	20, 52, 548, 580, 635, 667
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	8 cut(s)	72, 108, 213, 520, 529, 548, 570, 812
FauI	CCCGC	1 cut(s)	610
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	9 cut(s)	6, 19, 22, 93, 106, 144, 147, 312, 315
FokI	GGATG	2 cut(s)	382, 753
FriOI	GRGCYC	1 cut(s)	942
Fsp4HI	GCNGC	9 cut(s)	6, 19, 22, 93, 106, 144, 147, 312, 315
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	9 cut(s)	6, 19, 22, 93, 106, 144, 147, 312, 315
HaeIII	GGCC	1 cut(s)	528
HapII	CCGG	2 cut(s)	789, 836
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	8 cut(s)	76, 112, 217, 524, 533, 552, 574, 816
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HindIII	AAGCTT	3 cut(s)	262, 410, 644
HinfI	GANTC	2 cut(s)	745, 1037
HpaII	CCGG	2 cut(s)	789, 836
HphI	GGTGA	2 cut(s)	457, 796
Hpy166II	GTNNAC	2 cut(s)	460, 855
Hpy188I	TCNGA	2 cut(s)	51, 740
Hpy188III	TCNNGA	4 cut(s)	182, 214, 367, 685
Hpy8I	GTNNAC	2 cut(s)	460, 855
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	4 cut(s)	229, 518, 546, 823
HpyCH4IV	ACGT	1 cut(s)	689
HpyCH4V	TGCA	8 cut(s)	68, 95, 149, 225, 317, 432, 613, 893
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 610
HpyF3I	CTNAG	5 cut(s)	298, 365, 397, 408, 674
HpySE526I	ACGT	1 cut(s)	689
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	8 cut(s)	76, 112, 217, 524, 533, 552, 574, 816
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	228
LguI	GCTCTTC	1 cut(s)	974
Lsp1109I	GCAGC	8 cut(s)	17, 30, 33, 79, 130, 133, 298, 301
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	689
MaeIII	GTNAC	2 cut(s)	445, 784
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	6 cut(s)	24, 227, 340, 527, 838, 991
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	942
MluCI	AATT	2 cut(s)	777, 894
MlyI	GAGTC	1 cut(s)	1031
MmeI	TCCRAC	2 cut(s)	606, 931
MnlI	CCTC	7 cut(s)	307, 406, 578, 649, 947, 1051, 1054
MseI	TTAA	2 cut(s)	260, 1016
MslI	CAYNNNNRTG	1 cut(s)	575
MspA1I	CMGCKG	1 cut(s)	205
MspCI	CTTAAG	1 cut(s)	1015
MspI	CCGG	2 cut(s)	789, 836
MspR9I	CCNGG	3 cut(s)	485, 836, 902
Mva1269I	GAATGC	1 cut(s)	95
MvaI	CCWGG	2 cut(s)	485, 902
MwoI	GCNNNNNNNGC	2 cut(s)	308, 610
NciI	CCSGG	1 cut(s)	836
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	8 cut(s)	76, 112, 217, 524, 533, 552, 574, 816
NlaIV	GGNNCC	2 cut(s)	469, 834
NmuCI	GTSAC	2 cut(s)	445, 784
NspI	RCATGY	1 cut(s)	76
PagI	TCATGA	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	974
PctI	GAATGC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	745
PkrI	GCNGC	9 cut(s)	7, 20, 23, 94, 107, 145, 148, 313, 316
PleI	GAGTC	1 cut(s)	1031
PpsI	GAGTC	1 cut(s)	1031
PpuMI	RGGWCCY	2 cut(s)	467, 832
PshAI	GACNNNNGTC	1 cut(s)	692
PsiI	TTATAA	1 cut(s)	963
Psp5II	RGGWCCY	2 cut(s)	467, 832
Psp6I	CCWGG	2 cut(s)	483, 900
PspEI	GGTNACC	2 cut(s)	445, 784
PspGI	CCWGG	2 cut(s)	483, 900
PspN4I	GGNNCC	2 cut(s)	469, 834
PspPI	GGNCC	2 cut(s)	467, 832
PspPPI	RGGWCCY	2 cut(s)	467, 832
PsuI	RGATCY	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	575
SapI	GCTCTTC	1 cut(s)	974
SaqAI	TTAA	2 cut(s)	260, 1016
SatI	GCNGC	9 cut(s)	6, 19, 22, 93, 106, 144, 147, 312, 315
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	2 cut(s)	467, 832
SchI	GAGTC	1 cut(s)	1031
ScrFI	CCNGG	3 cut(s)	485, 836, 902
SduI	GDGCHC	1 cut(s)	942
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	1074
SinI	GGWCC	2 cut(s)	467, 832
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	1015
SmoI	CTYRAG	1 cut(s)	1015
Sse9I	AATT	2 cut(s)	777, 894
SsiI	CCGC	5 cut(s)	105, 203, 443, 617, 774
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	3 cut(s)	483, 834, 900
StyI	CCWWGG	2 cut(s)	87, 386
TaiI	ACGT	1 cut(s)	692
TaqI	TCGA	2 cut(s)	183, 513
TasI	AATT	2 cut(s)	777, 894
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	745
Tru1I	TTAA	2 cut(s)	260, 1016
Tru9I	TTAA	2 cut(s)	260, 1016
TseFI	GTSAC	2 cut(s)	445, 784
TseI	GCWGC	8 cut(s)	5, 18, 21, 92, 143, 146, 311, 314
Tsp45I	GTSAC	2 cut(s)	445, 784
TspDTI	ATGAA	7 cut(s)	125, 202, 231, 537, 641, 741, 1020
Vha464I	CTTAAG	1 cut(s)	1015
VpaK11BI	GGWCC	2 cut(s)	467, 832
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.