Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006280

Physical Location & Seq

Genomic Coordinates Forward (+)

35552966 .. 35563511

Gene Structure 10546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG281500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAAGCAGGAAGAAGTAGCAGCAGGAAGCCTTATTTGGTCGTTACTGTGATACAAACAATATATGCAGGCATGTTCTTGCTCTCCAAGGCTGCATTGAATGGTGGCATGAACACTTACGTGTTTGTGTTTTATAGACAGGCTGCTGCAACTCTCTTTTTAGTTCCTCTTGCTCTTTTTCTCGAATGGAAAACGGCGCCACCGCTGTCTTTCATGACCTTCTTCAAGATTTTTCTGCTTTCATTTTTCGGGATTACTGTAAGCTTGGACTTCTGCGGCGTTGGCCTTCTTTATACCTCGGCGACTTTGTATGCTGCAATCAGAAACAGCCTTCCTGTCATTACTTTCTTATTGGCAGTTCTACTCAGGATGGAAGTATTGAAGCTAAGGACAACCTCAGGTGTGGCTAAGCTTGCAGGCATATTATTTTGCACGGCAGGGGTGGTGACCCTGGCCGTATACAAAGGCCCCCATTTGAATCTCCTGGGGCATCATAATCTCTTTCATCACCATAACATCCAAGAACATGAAGGCCATGTGCCATCTGGAAAAACATGGATAGAGGGTTGCTTCCTCGTGCTGATGGGCCACATCTTTTGGGGCTTGTGGCTTGTGTTGCAGGCAGGAGTTATGAAAAGCTACCCTTCAATGCTTCTCTTCACAACTCTACAATGCTTTCTAAGTTCAATCCAGACGTTTGTCATTGCCATCGCTGTTGAGAGAAACCCCTATCAATGGAAGCTCGGATGGAATCTCAAACTTGTTGCAGTAGCTTACTGCGGAATTGTTGTTACCGGCATTACTTTCCATTTACAAGCGTGGGTAATAGAGAAGAAGGATGCAGTTTTCTTGGCTATGTCGACACCATTGGCTTCTATTATCACACTCTTTGCTTCTGCAATTCTCTTGGGAGAAATCATTAGTCTGGGAAGTATCTTAGGTGGGCTCTTATTTGTTGGAGGGCTTTATAGTGTTTTGTGGGCGAAGAGCAGAGAGCAAAGTATAGGTGATGAGAGTTGCTTAAGAGCTGAAGTTGTCAAAGACTCCTCAAAACTGAAAGAAACGAAGGACTTTGTTTCTGTACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

362

Amino Acids

39.87

Weight (kDa)

9.23

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	13 - 136	4.2e-08	EamA-like transporter family
EamA	PF00892	189 - 326	1.2e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64700 AT5G64700
fragaria_vesca	FvH4_1g23640 FvH4_1g23640
prunus_persica	Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0119241
rosa_laevigata	RLG00000018458 RLG00000034036
rosa_multiflora	Rmu_sc0001140.1_g000010 Rmu_sc0004760.1_g000012 Rmu_sc0007618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039430 Rroxscaffold_2G00124410
rosa_rugosa	Rorug02G0221200 Rorug05G0190500.1
rosa_samantha	Rh2AG279200 Rh2BG290000 Rh2DG285100 Rh2DG304100 Rh5AG276500 Rh5BG281500 Rh5CG313500 Rh5DG289500
rosa_wichuraiana	Rw2G022200 Rw5G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccI	GTMKAC	2 cut(s)	459, 860
AciI	CCGC	3 cut(s)	203, 276, 780
AcoI	YGGCCR	1 cut(s)	453
AcuI	CTGAAG	1 cut(s)	1050
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	1083
AfiI	CCNNNNNNNGG	1 cut(s)	735
AflII	CTTAAG	1 cut(s)	1021
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	6 cut(s)	100, 226, 382, 478, 648, 687
AjnI	CCWGG	2 cut(s)	450, 483
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	7 cut(s)	264, 385, 412, 639, 742, 773, 1028
AluI	AGCT	7 cut(s)	264, 385, 412, 639, 742, 773, 1028
AoxI	GGCC	5 cut(s)	283, 453, 466, 532, 586
ApeKI	GCWGC	5 cut(s)	21, 92, 143, 146, 314
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	467, 586
AsuHPI	GGTGA	3 cut(s)	457, 500, 1019
AxyI	CCTNAGG	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	948
BauI	CACGAG	1 cut(s)	575
BbvI	GCAGC	5 cut(s)	33, 79, 130, 133, 301
BccI	CCATC	5 cut(s)	364, 550, 577, 716, 741
BceAI	ACGGC	3 cut(s)	210, 440, 450
BciT130I	CCWGG	2 cut(s)	452, 485
BfoI	RGCGCY	1 cut(s)	200
BfrI	CTTAAG	1 cut(s)	1021
BisI	GCNGC	6 cut(s)	22, 93, 144, 147, 277, 315
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	6 cut(s)	23, 94, 145, 148, 278, 316
Bme1390I	CCNGG	2 cut(s)	452, 485
BmgT120I	GGNCC	2 cut(s)	467, 586
BmiI	GGNNCC	2 cut(s)	198, 469
BmrFI	CCNGG	2 cut(s)	452, 485
BmsI	GCATC	2 cut(s)	499, 829
BoxI	GACNNNNGTC	1 cut(s)	698
Bpu10I	CCTNAGC	1 cut(s)	386
Bpu1102I	GCTNAGC	1 cut(s)	408
BsaAI	YACGTR	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	4 cut(s)	87, 297, 450, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	735
Bse118I	RCCGGY	1 cut(s)	794
Bse21I	CCTNAGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	702
BseBI	CCWGG	2 cut(s)	452, 485
BseDI	CCNNGG	4 cut(s)	87, 297, 450, 484
BseGI	GGATG	4 cut(s)	375, 516, 752, 844
BseLI	CCNNNNNNNGG	1 cut(s)	735
BseMI	GCAATG	1 cut(s)	702
BseMII	CTCAG	2 cut(s)	379, 411
BseRI	GAGGAG	1 cut(s)	1036
BseXI	GCAGC	5 cut(s)	33, 79, 130, 133, 301
BshFI	GGCC	5 cut(s)	285, 455, 468, 534, 588
BshNI	GGYRCC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	795
BslI	CCNNNNNNNGG	1 cut(s)	735
BsnI	GGCC	5 cut(s)	285, 455, 468, 534, 588
Bsp1286I	GDGCHC	1 cut(s)	948
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	3 cut(s)	203, 276, 780
BspANI	GGCC	5 cut(s)	285, 455, 468, 534, 588
BspCNI	CTCAG	2 cut(s)	378, 410
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	198, 469
BspQI	GCTCTTC	1 cut(s)	980
BspT107I	GGYRCC	1 cut(s)	196
BspTI	CTTAAG	1 cut(s)	1021
BsrDI	GCAATG	1 cut(s)	702
BsrFI	RCCGGY	1 cut(s)	794
BssAI	RCCGGY	1 cut(s)	794
BssECI	CCNNGG	4 cut(s)	87, 297, 450, 484
BssNAI	GTATAC	1 cut(s)	460
BssNI	GRCGYC	1 cut(s)	197
BssSI	CACGAG	1 cut(s)	575
BssT1I	CCWWGG	1 cut(s)	87
Bst1107I	GTATAC	1 cut(s)	460
Bst2BI	CACGAG	1 cut(s)	575
Bst2UI	CCWGG	2 cut(s)	452, 485
Bst4CI	ACNGT	3 cut(s)	49, 259, 1086
Bst6I	CTCTTC	2 cut(s)	662, 980
BstACI	GRCGYC	1 cut(s)	197
BstAFI	CTTAAG	1 cut(s)	1021
BstBAI	YACGTR	1 cut(s)	121
BstC8I	GCNNGC	4 cut(s)	70, 414, 418, 621
BstDEI	CTNAG	6 cut(s)	365, 386, 397, 408, 680, 937
BstEII	GGTNACC	1 cut(s)	445
BstF5I	GGATG	4 cut(s)	375, 516, 752, 844
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	3 cut(s)	282, 413, 616
BstNI	CCWGG	2 cut(s)	452, 485
BstNSI	RCATGY	1 cut(s)	76
BstPAI	GACNNNNGTC	1 cut(s)	698
BstPI	GGTNACC	1 cut(s)	445
BstSCI	CCNGG	2 cut(s)	450, 483
BstV1I	GCAGC	5 cut(s)	33, 79, 130, 133, 301
BstZ17I	GTATAC	1 cut(s)	460
Bsu36I	CCTNAGG	1 cut(s)	397
BsuRI	GGCC	5 cut(s)	285, 455, 468, 534, 588
BtgZI	GCGATG	1 cut(s)	694
BtsCI	GGATG	4 cut(s)	375, 516, 752, 844
Cac8I	GCNNGC	4 cut(s)	70, 414, 418, 621
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	794
Cfr13I	GGNCC	2 cut(s)	467, 586
Csp6I	GTAC	1 cut(s)	1082
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	6 cut(s)	73, 109, 214, 527, 536, 555
CviQI	GTAC	1 cut(s)	1082
DdeI	CTNAG	6 cut(s)	365, 386, 397, 408, 680, 937
DinI	GGCGCC	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	2 cut(s)	662, 980
EarI	CTCTTC	2 cut(s)	662, 980
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	948
Eco57I	CTGAAG	1 cut(s)	1050
Eco81I	CCTNAGG	1 cut(s)	397
Eco91I	GGTNACC	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	467
EcoO65I	GGTNACC	1 cut(s)	445
EcoRII	CCWGG	2 cut(s)	450, 483
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	948
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	6 cut(s)	76, 112, 217, 530, 539, 558
FalI	AAGNNNNNCTT	2 cut(s)	628, 660
FatI	CATG	6 cut(s)	72, 108, 213, 526, 535, 554
FblI	GTMKAC	2 cut(s)	459, 860
Fnu4HI	GCNGC	6 cut(s)	22, 93, 144, 147, 277, 315
FokI	GGATG	4 cut(s)	382, 503, 759, 851
FriOI	GRGCYC	1 cut(s)	948
Fsp4HI	GCNGC	6 cut(s)	22, 93, 144, 147, 277, 315
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	6 cut(s)	22, 93, 144, 147, 277, 315
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	5 cut(s)	285, 455, 468, 534, 588
HapII	CCGG	1 cut(s)	795
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	6 cut(s)	76, 112, 217, 530, 539, 558
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	861
HindII	GTYRAC	1 cut(s)	861
HindIII	AAGCTT	2 cut(s)	262, 410
HinfI	GANTC	3 cut(s)	478, 751, 1043
HpaII	CCGG	1 cut(s)	795
HphI	GGTGA	3 cut(s)	457, 500, 1019
Hpy166II	GTNNAC	2 cut(s)	460, 861
Hpy188I	TCNGA	2 cut(s)	323, 746
Hpy188III	TCNNGA	7 cut(s)	182, 214, 226, 250, 367, 546, 691
Hpy8I	GTNNAC	2 cut(s)	460, 861
HpyAV	CCTTC	7 cut(s)	229, 296, 341, 524, 654, 829, 1060
HpyCH4III	ACNGT	3 cut(s)	49, 259, 1086
HpyCH4IV	ACGT	2 cut(s)	120, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	282, 413, 616
HpyF3I	CTNAG	6 cut(s)	365, 386, 397, 408, 680, 937
HpySE526I	ACGT	2 cut(s)	120, 695
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	6 cut(s)	76, 112, 217, 530, 539, 558
HspAI	GCGC	1 cut(s)	197
KasI	GGCGCC	1 cut(s)	196
LguI	GCTCTTC	1 cut(s)	980
Lsp1109I	GCAGC	5 cut(s)	33, 79, 130, 133, 301
LweI	GCATC	2 cut(s)	499, 829
MaeII	ACGT	2 cut(s)	120, 695
MaeIII	GTNAC	3 cut(s)	43, 445, 790
MboII	GAAGA	5 cut(s)	24, 214, 649, 844, 997
MhlI	GDGCHC	1 cut(s)	948
MluCI	AATT	2 cut(s)	783, 900
Mly113I	GGCGCC	1 cut(s)	197
MlyI	GAGTC	1 cut(s)	1037
MmeI	TCCRAC	1 cut(s)	937
MnlI	CCTC	7 cut(s)	177, 307, 406, 556, 584, 953, 1057
MseI	TTAA	1 cut(s)	1022
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	205
MspCI	CTTAAG	1 cut(s)	1021
MspI	CCGG	1 cut(s)	795
MspR9I	CCNGG	2 cut(s)	452, 485
MvaI	CCWGG	2 cut(s)	452, 485
MwoI	GCNNNNNNNGC	3 cut(s)	282, 413, 616
NarI	GGCGCC	1 cut(s)	197
NlaIII	CATG	6 cut(s)	76, 112, 217, 530, 539, 558
NlaIV	GGNNCC	2 cut(s)	198, 469
NmeAIII	GCCGAG	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	445
NspI	RCATGY	1 cut(s)	76
OliI	CACNNNNGTG	1 cut(s)	119
PagI	TCATGA	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	980
PfeI	GAWTC	2 cut(s)	478, 751
PkrI	GCNGC	6 cut(s)	23, 94, 145, 148, 278, 316
PleI	GAGTC	1 cut(s)	1037
PluTI	GGCGCC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	1037
Ppu21I	YACGTR	1 cut(s)	121
PshAI	GACNNNNGTC	1 cut(s)	698
Psp6I	CCWGG	2 cut(s)	450, 483
PspEI	GGTNACC	1 cut(s)	445
PspGI	CCWGG	2 cut(s)	450, 483
PspN4I	GGNNCC	2 cut(s)	198, 469
PspPI	GGNCC	2 cut(s)	467, 586
RsaI	GTAC	1 cut(s)	1083
RsaNI	GTAC	1 cut(s)	1082
RseI	CAYNNNNRTG	1 cut(s)	119
SalI	GTCGAC	1 cut(s)	859
SapI	GCTCTTC	1 cut(s)	980
SaqAI	TTAA	1 cut(s)	1022
SatI	GCNGC	6 cut(s)	22, 93, 144, 147, 277, 315
Sau96I	GGNCC	2 cut(s)	467, 586
SchI	GAGTC	1 cut(s)	1037
ScrFI	CCNGG	2 cut(s)	452, 485
SduI	GDGCHC	1 cut(s)	948
SfaNI	GCATC	2 cut(s)	499, 829
SfoI	GGCGCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	1021
SmoI	CTYRAG	1 cut(s)	1021
Sse9I	AATT	2 cut(s)	783, 900
SsiI	CCGC	3 cut(s)	203, 276, 780
SspDI	GGCGCC	1 cut(s)	196
StyD4I	CCNGG	2 cut(s)	450, 483
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	49, 259, 1086
TaiI	ACGT	2 cut(s)	123, 698
TaqI	TCGA	2 cut(s)	183, 860
TasI	AATT	2 cut(s)	783, 900
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	478, 751
Tru1I	TTAA	1 cut(s)	1022
Tru9I	TTAA	1 cut(s)	1022
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	5 cut(s)	21, 92, 143, 146, 314
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	6 cut(s)	125, 202, 231, 494, 543, 647
Vha464I	CTTAAG	1 cut(s)	1021
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmiI	GTMKAC	2 cut(s)	459, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.