Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006280

Physical Location & Seq

Genomic Coordinates Forward (+)

36116833 .. 36139259

Gene Structure 22427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG289500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCACATGTTGAGCTGCGCCATGTTCATGTCGCCGATGGCATCGATCTCGATAGAGATGGAGAAGCTGTCCTGACCCATCAATTTTTCTCAATAAAGTGGAAATTTAGGTATAGCATCACCAAACTAGCTAAAAGAATGGAAGCAGGAAGAAGTGGAAGCAGGAAGCCTTACTTGGTCGTTATTGTGATACAAACAATATATGCAGGCATGTTCTTGCTCTCCAAGGCTGCATTGAATGGTGGCATGAACACTTACGTGTTTGTGTTTTATAGACAGGCTGCTGCAACTCTCTTTTTAGTTCCTCTTGCTCTTTTTCTCGAATGGAAAACGGCGCCACCGCTGTCTTTCATGACCTTCTGCAAGATTTTTCTGCTTTCATTTTTCGGGATTACTGTAAGCTTGGACTTCTGTGGCGTTGGCCTTCTTTATACGTCGGCGACTTTGTCTGCAGCAATCAGAAACAGTCTTCCTGTCATTACTTTTCTCTTGGCACTTCTACTGAGGATGGAAGTATTGAAGCTAAGGACAACCTCAGGTGTGGCTAAGCTTGTAGGCATATTATTTTGCACGGCAGGGGTGGTGACCCTGGCCGTATACAAAGGCCCCCGTTTGAATCTCCTGGGGCATCATAATCTCTTTCATCACCATAACATCCAAGAGCATGAAGGCCATGTTCCATCGGGAAAAACATGGATAAAGGGTTGCTTCCTCGTGCTGATGTGCCACATCTTTTGGGGCTTGTGGCTTGTGTTGCAGGGAATTGTTGTTACCGGCATTACTTTCCATTTACAAGCGTGGGTAATCGAGAAGAAGGATCCAGTTTTCTTGGCTATGTCGACACCATTGGCTTCTATCATCACACTCTTTGCTTCTGCAATTCTCTTGGGAGAAATCATTAGTCTGGGAAGTATCTTAGGTGGGCTCTTATTGGTTGGAGGGCTTTATAGTGTTTTATGGGCGAAGAGCAGAGAGCAAAGTATAGTTGATGAGAGTTGCTTAAGAGCTGAAGCAAGGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

340

Amino Acids

37.6

Weight (kDa)

9.47

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	58 - 193	9.8e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64700 AT5G64700
fragaria_vesca	FvH4_1g23640 FvH4_1g23640
prunus_persica	Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0119241
rosa_laevigata	RLG00000018458 RLG00000034036
rosa_multiflora	Rmu_sc0001140.1_g000010 Rmu_sc0004760.1_g000012 Rmu_sc0007618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039430 Rroxscaffold_2G00124410
rosa_rugosa	Rorug02G0221200 Rorug05G0190500.1
rosa_samantha	Rh2AG279200 Rh2BG290000 Rh2DG285100 Rh2DG304100 Rh5AG276500 Rh5BG281500 Rh5CG313500 Rh5DG289500
rosa_wichuraiana	Rw2G022200 Rw5G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	334
AccI	GTMKAC	2 cut(s)	597, 839
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	2 cut(s)	812, 825
AcoI	YGGCCR	1 cut(s)	591
AcsI	RAATTY	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	335
AflII	CTTAAG	1 cut(s)	1000
AflIII	ACRYGT	2 cut(s)	7, 258
AgsI	TTSAA	3 cut(s)	238, 520, 616
AjnI	CCWGG	2 cut(s)	588, 621
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	7 cut(s)	16, 68, 131, 402, 523, 550, 1007
AluI	AGCT	7 cut(s)	16, 68, 131, 402, 523, 550, 1007
AlwI	GGATC	2 cut(s)	812, 825
AoxI	GGCC	4 cut(s)	421, 591, 604, 670
ApeKI	GCWGC	5 cut(s)	16, 230, 281, 284, 452
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	2 cut(s)	21, 337
AspS9I	GGNCC	1 cut(s)	605
AsuHPI	GGTGA	3 cut(s)	112, 595, 638
AxyI	CCTNAGG	1 cut(s)	535
BamHI	GGATCC	1 cut(s)	817
BanI	GGYRCC	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	927
BauI	CACGAG	1 cut(s)	713
BbsI	GAAGAC	1 cut(s)	461
BbvI	GCAGC	5 cut(s)	3, 217, 268, 271, 464
BccI	CCATC	5 cut(s)	32, 53, 87, 502, 688
BceAI	ACGGC	3 cut(s)	348, 578, 588
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	2 cut(s)	590, 623
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	450
BfoI	RGCGCY	1 cut(s)	338
BfrI	CTTAAG	1 cut(s)	1000
BisI	GCNGC	5 cut(s)	17, 231, 282, 285, 453
BlpI	GCTNAGC	1 cut(s)	546
BlsI	GCNGC	5 cut(s)	18, 232, 283, 286, 454
Bme1390I	CCNGG	2 cut(s)	590, 623
BmgT120I	GGNCC	1 cut(s)	605
BmiI	GGNNCC	3 cut(s)	336, 607, 819
BmrFI	CCNGG	2 cut(s)	590, 623
BmsI	GCATC	3 cut(s)	51, 126, 637
BpiI	GAAGAC	1 cut(s)	461
Bpu10I	CCTNAGC	1 cut(s)	524
Bpu1102I	GCTNAGC	1 cut(s)	546
Bsa29I	ATCGAT	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	335
BsaJI	CCNNGG	3 cut(s)	225, 588, 622
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bse118I	RCCGGY	1 cut(s)	773
Bse1I	ACTGG	1 cut(s)	821
Bse21I	CCTNAGG	1 cut(s)	535
BseBI	CCWGG	2 cut(s)	590, 623
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	3 cut(s)	225, 588, 622
BseGI	GGATG	2 cut(s)	513, 654
BseMII	CTCAG	2 cut(s)	494, 549
BseNI	ACTGG	1 cut(s)	821
BseXI	GCAGC	5 cut(s)	3, 217, 268, 271, 464
BshFI	GGCC	4 cut(s)	423, 593, 606, 672
BshNI	GGYRCC	1 cut(s)	334
BshVI	ATCGAT	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	774
BsnI	GGCC	4 cut(s)	423, 593, 606, 672
Bsp1286I	GDGCHC	1 cut(s)	927
Bsp143I	GATC	2 cut(s)	46, 817
Bsp1720I	GCTNAGC	1 cut(s)	546
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	4 cut(s)	423, 593, 606, 672
BspCNI	CTCAG	2 cut(s)	495, 548
BspDI	ATCGAT	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	3 cut(s)	336, 607, 819
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	2 cut(s)	812, 825
BspQI	GCTCTTC	1 cut(s)	959
BspT107I	GGYRCC	1 cut(s)	334
BspTI	CTTAAG	1 cut(s)	1000
BsrFI	RCCGGY	1 cut(s)	773
BsrI	ACTGG	1 cut(s)	821
BssAI	RCCGGY	1 cut(s)	773
BssECI	CCNNGG	3 cut(s)	225, 588, 622
BssMI	GATC	2 cut(s)	46, 817
BssNAI	GTATAC	1 cut(s)	598
BssNI	GRCGYC	1 cut(s)	335
BssSI	CACGAG	1 cut(s)	713
BssT1I	CCWWGG	1 cut(s)	225
Bst1107I	GTATAC	1 cut(s)	598
Bst2BI	CACGAG	1 cut(s)	713
Bst2UI	CCWGG	2 cut(s)	590, 623
Bst4CI	ACNGT	2 cut(s)	397, 467
Bst6I	CTCTTC	1 cut(s)	959
BstACI	GRCGYC	1 cut(s)	335
BstAFI	CTTAAG	1 cut(s)	1000
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	5 cut(s)	503, 524, 535, 546, 916
BstEII	GGTNACC	1 cut(s)	583
BstF5I	GGATG	2 cut(s)	513, 654
BstH2I	RGCGCY	1 cut(s)	338
BstHHI	GCGC	2 cut(s)	21, 337
BstKTI	GATC	2 cut(s)	49, 820
BstMBI	GATC	2 cut(s)	46, 817
BstMWI	GCNNNNNNNGC	1 cut(s)	754
BstNI	CCWGG	2 cut(s)	590, 623
BstNSI	RCATGY	2 cut(s)	11, 214
BstPI	GGTNACC	1 cut(s)	583
BstSCI	CCNGG	2 cut(s)	588, 621
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	5 cut(s)	3, 217, 268, 271, 464
BstV2I	GAAGAC	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
BstZ17I	GTATAC	1 cut(s)	598
Bsu15I	ATCGAT	1 cut(s)	45
Bsu36I	CCTNAGG	1 cut(s)	535
BsuRI	GGCC	4 cut(s)	423, 593, 606, 672
BsuTUI	ATCGAT	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	513, 654
Cac8I	GCNNGC	1 cut(s)	208
CciI	TCATGA	1 cut(s)	351
CfoI	GCGC	2 cut(s)	21, 337
Cfr10I	RCCGGY	1 cut(s)	773
Cfr13I	GGNCC	1 cut(s)	605
ClaI	ATCGAT	1 cut(s)	45
CspCI	CAANNNNNGTGG	2 cut(s)	716, 751
CviAII	CATG	9 cut(s)	8, 23, 29, 211, 247, 352, 665, 674, 693
DdeI	CTNAG	5 cut(s)	503, 524, 535, 546, 916
DinI	GGCGCC	1 cut(s)	336
DpnI	GATC	2 cut(s)	48, 819
DpnII	GATC	2 cut(s)	46, 817
EaeI	YGGCCR	1 cut(s)	591
Eam1104I	CTCTTC	1 cut(s)	959
EarI	CTCTTC	1 cut(s)	959
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	927
Eco81I	CCTNAGG	1 cut(s)	535
Eco91I	GGTNACC	1 cut(s)	583
EcoO109I	RGGNCCY	1 cut(s)	605
EcoO65I	GGTNACC	1 cut(s)	583
EcoRII	CCWGG	2 cut(s)	588, 621
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	927
EgeI	GGCGCC	1 cut(s)	336
EheI	GGCGCC	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	9 cut(s)	11, 26, 32, 214, 250, 355, 668, 677, 696
FalI	AAGNNNNNCTT	4 cut(s)	158, 190, 692, 724
FatI	CATG	9 cut(s)	7, 22, 28, 210, 246, 351, 664, 673, 692
FblI	GTMKAC	2 cut(s)	597, 839
Fnu4HI	GCNGC	5 cut(s)	17, 231, 282, 285, 453
FokI	GGATG	2 cut(s)	520, 641
FriOI	GRGCYC	1 cut(s)	927
Fsp4HI	GCNGC	5 cut(s)	17, 231, 282, 285, 453
FspBI	CTAG	1 cut(s)	128
GlaI	GCGC	2 cut(s)	20, 336
GluI	GCNGC	5 cut(s)	17, 231, 282, 285, 453
HaeII	RGCGCY	1 cut(s)	338
HaeIII	GGCC	4 cut(s)	423, 593, 606, 672
HapII	CCGG	1 cut(s)	774
HhaI	GCGC	2 cut(s)	21, 337
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	9 cut(s)	11, 26, 32, 214, 250, 355, 668, 677, 696
Hin6I	GCGC	2 cut(s)	19, 335
HinP1I	GCGC	2 cut(s)	19, 335
HincII	GTYRAC	1 cut(s)	840
HindII	GTYRAC	1 cut(s)	840
HindIII	AAGCTT	2 cut(s)	400, 548
HinfI	GANTC	1 cut(s)	616
HpaII	CCGG	1 cut(s)	774
HphI	GGTGA	3 cut(s)	112, 595, 638
Hpy166II	GTNNAC	2 cut(s)	598, 840
Hpy188I	TCNGA	1 cut(s)	461
Hpy188III	TCNNGA	7 cut(s)	50, 73, 320, 352, 388, 684, 808
Hpy8I	GTNNAC	2 cut(s)	598, 840
Hpy99I	CGWCG	1 cut(s)	439
HpyAV	CCTTC	4 cut(s)	367, 434, 662, 808
HpyCH4III	ACNGT	2 cut(s)	397, 467
HpyCH4IV	ACGT	2 cut(s)	258, 434
HpyCH4V	TGCA	8 cut(s)	206, 233, 287, 363, 452, 570, 757, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	754
HpyF3I	CTNAG	5 cut(s)	503, 524, 535, 546, 916
HpySE526I	ACGT	2 cut(s)	258, 434
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	9 cut(s)	11, 26, 32, 214, 250, 355, 668, 677, 696
HspAI	GCGC	2 cut(s)	19, 335
KasI	GGCGCC	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	46, 817
LguI	GCTCTTC	1 cut(s)	959
Lsp1109I	GCAGC	5 cut(s)	3, 217, 268, 271, 464
LweI	GCATC	3 cut(s)	51, 126, 637
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	2 cut(s)	258, 434
MaeIII	GTNAC	2 cut(s)	583, 769
MalI	GATC	2 cut(s)	48, 819
MboI	GATC	2 cut(s)	46, 817
MboII	GAAGA	4 cut(s)	162, 461, 823, 976
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	1 cut(s)	927
MluCI	AATT	4 cut(s)	83, 104, 762, 879
Mly113I	GGCGCC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	916
MnlI	CCTC	5 cut(s)	315, 498, 544, 722, 932
MseI	TTAA	1 cut(s)	1001
MslI	CAYNNNNRTG	2 cut(s)	27, 257
MspA1I	CMGCKG	1 cut(s)	343
MspCI	CTTAAG	1 cut(s)	1000
MspI	CCGG	1 cut(s)	774
MspR9I	CCNGG	2 cut(s)	590, 623
MvaI	CCWGG	2 cut(s)	590, 623
MwoI	GCNNNNNNNGC	1 cut(s)	754
NarI	GGCGCC	1 cut(s)	335
NdeII	GATC	2 cut(s)	46, 817
NlaIII	CATG	9 cut(s)	11, 26, 32, 214, 250, 355, 668, 677, 696
NlaIV	GGNNCC	3 cut(s)	336, 607, 819
NmuCI	GTSAC	1 cut(s)	583
NspI	RCATGY	2 cut(s)	11, 214
OliI	CACNNNNGTG	1 cut(s)	257
PagI	TCATGA	1 cut(s)	351
PciI	ACATGT	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	959
PfeI	GAWTC	1 cut(s)	616
PflFI	GACNNNGTC	1 cut(s)	445
PkrI	GCNGC	5 cut(s)	18, 232, 283, 286, 454
PluTI	GGCGCC	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	259
PscI	ACATGT	1 cut(s)	7
Psp6I	CCWGG	2 cut(s)	588, 621
PspEI	GGTNACC	1 cut(s)	583
PspGI	CCWGG	2 cut(s)	588, 621
PspN4I	GGNNCC	3 cut(s)	336, 607, 819
PspPI	GGNCC	1 cut(s)	605
PstI	CTGCAG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	817
PsyI	GACNNNGTC	1 cut(s)	445
RseI	CAYNNNNRTG	2 cut(s)	27, 257
SalI	GTCGAC	1 cut(s)	838
SapI	GCTCTTC	1 cut(s)	959
SaqAI	TTAA	1 cut(s)	1001
SatI	GCNGC	5 cut(s)	17, 231, 282, 285, 453
Sau3AI	GATC	2 cut(s)	46, 817
Sau96I	GGNCC	1 cut(s)	605
ScrFI	CCNGG	2 cut(s)	590, 623
SduI	GDGCHC	1 cut(s)	927
SfaNI	GCATC	3 cut(s)	51, 126, 637
SfcI	CTRYAG	1 cut(s)	450
SfoI	GGCGCC	1 cut(s)	336
SmiMI	CAYNNNNRTG	2 cut(s)	27, 257
SmlI	CTYRAG	1 cut(s)	1000
SmoI	CTYRAG	1 cut(s)	1000
Sse9I	AATT	4 cut(s)	83, 104, 762, 879
SsiI	CCGC	1 cut(s)	341
SspDI	GGCGCC	1 cut(s)	334
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	2 cut(s)	588, 621
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	397, 467
TaiI	ACGT	2 cut(s)	261, 437
TaqI	TCGA	5 cut(s)	45, 51, 321, 807, 839
TasI	AATT	4 cut(s)	83, 104, 762, 879
TfiI	GAWTC	1 cut(s)	616
Tru1I	TTAA	1 cut(s)	1001
Tru9I	TTAA	1 cut(s)	1001
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	5 cut(s)	16, 230, 281, 284, 452
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	6 cut(s)	17, 263, 340, 369, 632, 681
Tth111I	GACNNNGTC	1 cut(s)	445
Vha464I	CTTAAG	1 cut(s)	1000
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	2 cut(s)	11, 214
XmiI	GTMKAC	2 cut(s)	597, 839
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.