Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007618.1

Orthogroup ID

OG0006280

Physical Location & Seq

Genomic Coordinates Reverse (-)

2874 .. 5261

Gene Structure 2388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007618.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ctgctccaaaagtgcggccgtttgggatttctcttcgacaaggagccgacggagaccaggggcatcccgaaccagtttgcagtaaagacaaaggccaaggagatcgagatcgaaggtttgggcagcgacctcacccaaaacttcaatcccgatcaagattcgatccctacagccaccgtcctccgtcagaccttcttaaccccaaaccaggggaaccacaatgacaacccgcctccgccgcacaccgaaatcgctccgtcgcaccacccttgcttgaacaaacctctgccgcacagatccaagaacgtaacaaggaggagcccctctgcttgtcgttctcttaccaaacgcgacccaggcactcccagccctctgttcctgcccaaaaacctcccggccctcacctgtggactgacgcaactagttagcctgtccggcgacgacgtcccacggatgtgccgccggacgcggcatagaaaatttccttggggttttcgctgcttcgactttcttagagctctcgatattattttgatgaagacgtttgtcattgccatcgctgttgagagaaacccctatcaatggaagctcggatggaatctcaaacttgtggcagtagcttacagcggaattgttgttaccggcattactttccatttacaagcgtgggtaatcgagaagaaggatccagttttcttggctatgtcgacaccattggcttctatcatcacactctttgcttctgcaattctcttgggagaaatcattagtctgggaagtatcttaggtgggctcttattggttggagggctttatagtgttttatgggcgaagagcagagagcaaagtatagttgatgagagttgcttaagagctgaagcaagggcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

296

Amino Acids

32.81

Weight (kDa)

9.51

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64700 AT5G64700
fragaria_vesca	FvH4_1g23640 FvH4_1g23640
prunus_persica	Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0119241
rosa_laevigata	RLG00000018458 RLG00000034036
rosa_multiflora	Rmu_sc0001140.1_g000010 Rmu_sc0004760.1_g000012 Rmu_sc0007618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039430 Rroxscaffold_2G00124410
rosa_rugosa	Rorug02G0221200 Rorug05G0190500.1
rosa_samantha	Rh2AG279200 Rh2BG290000 Rh2DG285100 Rh2DG304100 Rh5AG276500 Rh5BG281500 Rh5CG313500 Rh5DG289500
rosa_wichuraiana	Rw2G022200 Rw5G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	447
AccI	GTMKAC	1 cut(s)	707
AccII	CGCG	2 cut(s)	351, 469
AciI	CCGC	8 cut(s)	15, 230, 236, 239, 290, 460, 469, 627
AclWI	GGATC	4 cut(s)	157, 291, 680, 693
AcoI	YGGCCR	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	444
AfiI	CCNNNNNNNGG	3 cut(s)	208, 209, 582
AflII	CTTAAG	1 cut(s)	868
AgsI	TTSAA	2 cut(s)	145, 277
AhlI	ACTAGT	1 cut(s)	421
AjnI	CCWGG	3 cut(s)	56, 207, 355
AjuI	GAANNNNNNNTTGG	2 cut(s)	469, 501
AleI	CACNNNNGTG	1 cut(s)	454
AluBI	AGCT	4 cut(s)	518, 589, 620, 875
AluI	AGCT	4 cut(s)	518, 589, 620, 875
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	4 cut(s)	157, 291, 680, 693
AoxI	GGCC	3 cut(s)	16, 93, 396
ApeKI	GCWGC	2 cut(s)	123, 498
ApoI	RAATTY	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	397
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	124, 394
BamHI	GGATCC	1 cut(s)	685
BanII	GRGCYC	3 cut(s)	323, 520, 795
BbsI	GAAGAC	1 cut(s)	545
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	2 cut(s)	135, 485
BccI	CCATC	2 cut(s)	563, 588
BceAI	ACGGC	1 cut(s)	3
BciT130I	CCWGG	3 cut(s)	58, 209, 357
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	47
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	168
BfrI	CTTAAG	1 cut(s)	868
BglI	GCCNNNNNGGC	1 cut(s)	435
BisI	GCNGC	7 cut(s)	16, 124, 239, 290, 460, 470, 499
BlsI	GCNGC	7 cut(s)	17, 125, 240, 291, 461, 471, 500
Bme1390I	CCNGG	4 cut(s)	58, 209, 357, 395
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	4 cut(s)	45, 215, 320, 687
BmrFI	CCNGG	4 cut(s)	58, 209, 357, 395
BmsI	GCATC	1 cut(s)	72
BoxI	GACNNNNGTC	1 cut(s)	545
BpiI	GAAGAC	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	6 cut(s)	57, 96, 208, 355, 449, 485
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 209, 582
Bse118I	RCCGGY	1 cut(s)	641
Bse1I	ACTGG	2 cut(s)	73, 689
Bse3DI	GCAATG	1 cut(s)	549
Bse8I	GATNNNNATC	1 cut(s)	107
BseBI	CCWGG	3 cut(s)	58, 209, 357
BseDI	CCNNGG	6 cut(s)	57, 96, 208, 355, 449, 485
BseGI	GGATG	3 cut(s)	63, 459, 599
BseJI	GATNNNNATC	1 cut(s)	107
BseLI	CCNNNNNNNGG	3 cut(s)	208, 209, 582
BseMI	GCAATG	1 cut(s)	549
BseNI	ACTGG	2 cut(s)	73, 689
BseRI	GAGGAG	1 cut(s)	331
BseX3I	CGGCCG	1 cut(s)	16
BseXI	GCAGC	2 cut(s)	135, 485
BseYI	CCCAGC	1 cut(s)	365
Bsh1236I	CGCG	2 cut(s)	351, 469
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	3 cut(s)	18, 95, 398
BsiEI	CGRYCG	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	520
BsiSI	CCGG	4 cut(s)	395, 435, 463, 642
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	3 cut(s)	208, 209, 582
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	3 cut(s)	18, 95, 398
Bso31I	GGTCTC	1 cut(s)	47
Bsp1286I	GDGCHC	3 cut(s)	323, 520, 795
Bsp143I	GATC	6 cut(s)	102, 108, 151, 162, 296, 685
BspACI	CCGC	8 cut(s)	15, 230, 236, 239, 290, 460, 469, 627
BspANI	GGCC	3 cut(s)	18, 95, 398
BspFNI	CGCG	2 cut(s)	351, 469
BspLI	GGNNCC	4 cut(s)	45, 215, 320, 687
BspPI	GGATC	4 cut(s)	157, 291, 680, 693
BspQI	GCTCTTC	1 cut(s)	827
BspTI	CTTAAG	1 cut(s)	868
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	641
BsrI	ACTGG	2 cut(s)	73, 689
BssAI	RCCGGY	1 cut(s)	641
BssECI	CCNNGG	6 cut(s)	57, 96, 208, 355, 449, 485
BssMI	GATC	6 cut(s)	102, 108, 151, 162, 296, 685
BssNI	GRCGYC	1 cut(s)	444
BssT1I	CCWWGG	2 cut(s)	96, 485
Bst2UI	CCWGG	3 cut(s)	58, 209, 357
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	2 cut(s)	38, 827
BstACI	GRCGYC	1 cut(s)	444
BstAFI	CTTAAG	1 cut(s)	868
BstDEI	CTNAG	2 cut(s)	512, 784
BstDSI	CCRYGG	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	63, 459, 599
BstFNI	CGCG	2 cut(s)	351, 469
BstKTI	GATC	6 cut(s)	105, 111, 154, 165, 299, 688
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	6 cut(s)	102, 108, 151, 162, 296, 685
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	4 cut(s)	238, 357, 366, 435
BstNI	CCWGG	3 cut(s)	58, 209, 357
BstPAI	GACNNNNGTC	1 cut(s)	545
BstSCI	CCNGG	4 cut(s)	56, 207, 355, 393
BstSFI	CTRYAG	1 cut(s)	168
BstUI	CGCG	2 cut(s)	351, 469
BstV1I	GCAGC	2 cut(s)	135, 485
BstV2I	GAAGAC	1 cut(s)	545
BstX2I	RGATCY	2 cut(s)	296, 685
BstYI	RGATCY	2 cut(s)	296, 685
BstZI	CGGCCG	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	18, 95, 398
BtgI	CCRYGG	1 cut(s)	449
BtgZI	GCGATG	1 cut(s)	541
BtsCI	GGATG	3 cut(s)	63, 459, 599
Cfr10I	RCCGGY	1 cut(s)	641
Cfr13I	GGNCC	1 cut(s)	397
CseI	GACGC	2 cut(s)	424, 475
DdeI	CTNAG	2 cut(s)	512, 784
DpnI	GATC	6 cut(s)	104, 110, 153, 164, 298, 687
DpnII	GATC	6 cut(s)	102, 108, 151, 162, 296, 685
EaeI	YGGCCR	1 cut(s)	16
EagI	CGGCCG	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	38, 827
EarI	CTCTTC	2 cut(s)	38, 827
EciI	GGCGGA	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	518
EclXI	CGGCCG	1 cut(s)	16
Eco130I	CCWWGG	2 cut(s)	96, 485
Eco24I	GRGCYC	3 cut(s)	323, 520, 795
Eco31I	GGTCTC	1 cut(s)	47
Eco52I	CGGCCG	1 cut(s)	16
Eco53kI	GAGCTC	1 cut(s)	518
EcoICRI	GAGCTC	1 cut(s)	518
EcoRII	CCWGG	3 cut(s)	56, 207, 355
EcoT14I	CCWWGG	2 cut(s)	96, 485
EcoT38I	GRGCYC	3 cut(s)	323, 520, 795
ErhI	CCWWGG	2 cut(s)	96, 485
FaiI	YATR	5 cut(s)	474, 704, 816, 826, 851
FaqI	GGGAC	1 cut(s)	431
FauI	CCCGC	1 cut(s)	237
FblI	GTMKAC	1 cut(s)	707
Fnu4HI	GCNGC	7 cut(s)	16, 124, 239, 290, 460, 470, 499
FokI	GGATG	3 cut(s)	50, 466, 606
FriOI	GRGCYC	3 cut(s)	323, 520, 795
Fsp4HI	GCNGC	7 cut(s)	16, 124, 239, 290, 460, 470, 499
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	7 cut(s)	16, 124, 239, 290, 460, 470, 499
GsaI	CCCAGC	1 cut(s)	369
HaeIII	GGCC	3 cut(s)	18, 95, 398
HapII	CCGG	4 cut(s)	395, 435, 463, 642
HgaI	GACGC	2 cut(s)	424, 475
Hin1I	GRCGYC	1 cut(s)	444
HincII	GTYRAC	1 cut(s)	708
HindII	GTYRAC	1 cut(s)	708
HinfI	GANTC	2 cut(s)	158, 598
HpaII	CCGG	4 cut(s)	395, 435, 463, 642
HphI	GGTGA	2 cut(s)	124, 394
Hpy166II	GTNNAC	2 cut(s)	410, 708
Hpy188I	TCNGA	2 cut(s)	189, 593
Hpy188III	TCNNGA	6 cut(s)	67, 106, 149, 155, 521, 676
Hpy8I	GTNNAC	2 cut(s)	410, 708
Hpy99I	CGWCG	4 cut(s)	52, 262, 443, 446
HpyAV	CCTTC	3 cut(s)	107, 202, 676
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	3 cut(s)	306, 444, 542
HpyCH4V	TGCA	2 cut(s)	80, 746
HpyF10VI	GCNNNNNNNGC	4 cut(s)	238, 357, 366, 435
HpyF3I	CTNAG	2 cut(s)	512, 784
HpySE526I	ACGT	3 cut(s)	306, 444, 542
Hsp92I	GRCGYC	1 cut(s)	444
Kzo9I	GATC	6 cut(s)	102, 108, 151, 162, 296, 685
LguI	GCTCTTC	1 cut(s)	827
LmnI	GCTCC	4 cut(s)	9, 43, 259, 318
Lsp1109I	GCAGC	2 cut(s)	135, 485
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	3 cut(s)	306, 444, 542
MaeIII	GTNAC	2 cut(s)	307, 637
MalI	GATC	6 cut(s)	104, 110, 153, 164, 298, 687
MboI	GATC	6 cut(s)	102, 108, 151, 162, 296, 685
MboII	GAAGA	4 cut(s)	25, 550, 691, 844
MflI	RGATCY	2 cut(s)	296, 685
MhlI	GDGCHC	3 cut(s)	323, 520, 795
MluCI	AATT	3 cut(s)	479, 630, 747
MmeI	TCCRAC	1 cut(s)	784
MseI	TTAA	2 cut(s)	197, 869
MslI	CAYNNNNRTG	1 cut(s)	454
MspA1I	CMGCKG	1 cut(s)	627
MspCI	CTTAAG	1 cut(s)	868
MspI	CCGG	4 cut(s)	395, 435, 463, 642
MspR9I	CCNGG	4 cut(s)	58, 209, 357, 395
MvaI	CCWGG	3 cut(s)	58, 209, 357
MvnI	CGCG	2 cut(s)	351, 469
MwoI	GCNNNNNNNGC	4 cut(s)	238, 357, 366, 435
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	6 cut(s)	102, 108, 151, 162, 296, 685
NlaIV	GGNNCC	4 cut(s)	45, 215, 320, 687
OliI	CACNNNNGTG	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	827
PfeI	GAWTC	2 cut(s)	158, 598
PflFI	GACNNNGTC	1 cut(s)	443
PkrI	GCNGC	7 cut(s)	17, 125, 240, 291, 461, 471, 500
PshAI	GACNNNNGTC	1 cut(s)	545
Psp124BI	GAGCTC	1 cut(s)	520
Psp6I	CCWGG	3 cut(s)	56, 207, 355
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	3 cut(s)	56, 207, 355
PspN4I	GGNNCC	4 cut(s)	45, 215, 320, 687
PspPI	GGNCC	1 cut(s)	397
PsuI	RGATCY	2 cut(s)	296, 685
PsyI	GACNNNGTC	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	454
SacI	GAGCTC	1 cut(s)	520
SalI	GTCGAC	1 cut(s)	706
SapI	GCTCTTC	1 cut(s)	827
SaqAI	TTAA	2 cut(s)	197, 869
SatI	GCNGC	7 cut(s)	16, 124, 239, 290, 460, 470, 499
Sau3AI	GATC	6 cut(s)	102, 108, 151, 162, 296, 685
Sau96I	GGNCC	1 cut(s)	397
ScrFI	CCNGG	4 cut(s)	58, 209, 357, 395
SduI	GDGCHC	3 cut(s)	323, 520, 795
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	454
SmlI	CTYRAG	1 cut(s)	868
SmoI	CTYRAG	1 cut(s)	868
SpeI	ACTAGT	1 cut(s)	421
Sse9I	AATT	3 cut(s)	479, 630, 747
SsiI	CCGC	8 cut(s)	15, 230, 236, 239, 290, 460, 469, 627
SspMI	CTAG	1 cut(s)	422
SstI	GAGCTC	1 cut(s)	520
StyD4I	CCNGG	4 cut(s)	56, 207, 355, 393
StyI	CCWWGG	2 cut(s)	96, 485
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	3 cut(s)	309, 447, 545
TaqI	TCGA	8 cut(s)	36, 105, 111, 161, 504, 522, 675, 707
TasI	AATT	3 cut(s)	479, 630, 747
TauI	GCSGC	5 cut(s)	18, 241, 292, 462, 472
TfiI	GAWTC	2 cut(s)	158, 598
Tru1I	TTAA	2 cut(s)	197, 869
Tru9I	TTAA	2 cut(s)	197, 869
TseI	GCWGC	2 cut(s)	123, 498
TspDTI	ATGAA	1 cut(s)	551
TspGWI	ACGGA	4 cut(s)	65, 173, 246, 466
Tth111I	GACNNNGTC	1 cut(s)	443
Vha464I	CTTAAG	1 cut(s)	868
XapI	RAATTY	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	707
XspI	CTAG	1 cut(s)	422
ZraI	GACGTC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.