Rw2G022200

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006280
Physical Location & Seq
Reverse (-)
31050278 .. 31056813
6536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G022200.1

Sequence Viewer

Length: 870 bp
ATGACCTTCTGCAAGATCTTTCTTCTTTCATTTTTTGGGATTACTTTAAGCTTGGATATCTATGGCGTCGCCCTTGTTTATACCTCAGCGACTTTGGCTGCTGCAATCACAAACTGCCTTCCTGTCATAACTTTCTTCTTGGCACTTCTACTCAGGATGGAAGTATTGAAGCCAAGGACAACCTCAGGTTTGGCTAAGCTTGTAGGCATATTATTTTGCACGGCAGGGGCGGCGACCCTTGCCGTATACAAAGGTCCCCATTTCAATCTCCTGGGGCATCATAATCTCTTACATCATATCGAAGAACATGAAGGCCATGTTCCTTCTGGCAAAACATGGATAAAGGGTTGCTTCCTCATGCTGATGTCCAACACCTTTTGGGGCTTGTGGCTTGTTTTGCAGGCACGAGTTATGAAAAGCTACCCCTCAAAGCTTCTCTTTACTACTCTACAATGCTTTCTAAGTTCAATCCAGACGTTTGTCATTGCCATCGCTGTTGAGAGAAACCCCTATGAATGGAAGCTCGGATGGAATCTCAAACTTGTTGCCATAGCTTACTGCGGAATTGTGGTGACCGGCATTACTTACCATTTACAAGCATGGGTAATGGAGAAGAAGGACCCGGTTTTCTTGGCTATGTCCACACCATTGGCTTTGGTCATCACACTCTTTGCTTCTGCAATTCTCCTGGGAGAAATCATTAGTCTGGGAAGTATCTTGGGTGGGCTCTTATTGGTTGGAGGGCTTTATAGTGTTTTATGGGCGAAGAGCAGAGAGCAGAGTATAGTTGATGAAAGTTGCTTAAGAGCTGAAGTTGTCAAAGACTCCTCAAAACTGAAAGAAACAGAGGACTTTGTTTCTGTAGCGTAA

Protein Analysis

289

Amino Acids

31.83

Weight (kDa)

8.62

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 115 - 253 1.3e-14 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AciI CCGC 2 cut(s) 230, 561
AcuI CTGAAG 1 cut(s) 831
AcyI GRCGYC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 516
AflII CTTAAG 1 cut(s) 802
AgsI TTSAA 3 cut(s) 169, 265, 468
AjnI CCWGG 2 cut(s) 270, 687
AluBI AGCT 7 cut(s) 51, 199, 420, 433, 523, 554, 809
AluI AGCT 7 cut(s) 51, 199, 420, 433, 523, 554, 809
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 2 cut(s) 98, 101
AspS9I GGNCC 2 cut(s) 254, 619
AsuC2I CCSGG 1 cut(s) 623
AsuHPI GGTGA 1 cut(s) 583
AvaII GGWCC 2 cut(s) 254, 619
AxyI CCTNAGG 1 cut(s) 184
BanII GRGCYC 1 cut(s) 729
BauI CACGAG 1 cut(s) 405
BbvCI CCTCAGC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 85, 88
BccI CCATC 3 cut(s) 151, 497, 522
BceAI ACGGC 2 cut(s) 227, 237
BciT130I CCWGG 2 cut(s) 272, 689
BcnI CCSGG 1 cut(s) 623
BfmI CTRYAG 1 cut(s) 861
BfrI CTTAAG 1 cut(s) 802
BglII AGATCT 1 cut(s) 15
BisI GCNGC 3 cut(s) 99, 102, 231
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 3 cut(s) 100, 103, 232
Bme1390I CCNGG 3 cut(s) 272, 623, 689
Bme18I GGWCC 2 cut(s) 254, 619
BmgT120I GGNCC 2 cut(s) 254, 619
BmiI GGNNCC 2 cut(s) 256, 621
BmrFI CCNGG 3 cut(s) 272, 623, 689
BmsI GCATC 1 cut(s) 286
BoxI GACNNNNGTC 1 cut(s) 479
Bpu10I CCTNAGC 1 cut(s) 85
Bpu1102I GCTNAGC 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 623
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 3 cut(s) 173, 271, 688
Bsc4I CCNNNNNNNGG 1 cut(s) 516
Bse118I RCCGGY 1 cut(s) 575
Bse21I CCTNAGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 483
BseBI CCWGG 2 cut(s) 272, 689
BseDI CCNNGG 3 cut(s) 173, 271, 688
BseGI GGATG 2 cut(s) 162, 533
BseLI CCNNNNNNNGG 1 cut(s) 516
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 3 cut(s) 99, 166, 198
BseRI GAGGAG 1 cut(s) 817
BseXI GCAGC 2 cut(s) 85, 88
BshFI GGCC 1 cut(s) 315
BsiSI CCGG 2 cut(s) 576, 623
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 516
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 729
Bsp143I GATC 1 cut(s) 15
Bsp1720I GCTNAGC 1 cut(s) 195
BspACI CCGC 2 cut(s) 230, 561
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 3 cut(s) 98, 165, 197
BspLI GGNNCC 2 cut(s) 256, 621
BspQI GCTCTTC 1 cut(s) 761
BspTI CTTAAG 1 cut(s) 802
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 575
BssAI RCCGGY 1 cut(s) 575
BssECI CCNNGG 3 cut(s) 173, 271, 688
BssMI GATC 1 cut(s) 15
BssNAI GTATAC 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 1 cut(s) 405
BssT1I CCWWGG 1 cut(s) 173
Bst1107I GTATAC 1 cut(s) 247
Bst2BI CACGAG 1 cut(s) 405
Bst2UI CCWGG 2 cut(s) 272, 689
Bst6I CTCTTC 1 cut(s) 761
BstACI GRCGYC 1 cut(s) 66
BstAFI CTTAAG 1 cut(s) 802
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 5 cut(s) 85, 152, 184, 195, 461
BstEII GGTNACC 1 cut(s) 571
BstF5I GGATG 2 cut(s) 162, 533
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 4 cut(s) 95, 230, 239, 397
BstNI CCWGG 2 cut(s) 272, 689
BstPAI GACNNNNGTC 1 cut(s) 479
BstPI GGTNACC 1 cut(s) 571
BstSCI CCNGG 3 cut(s) 270, 621, 687
BstSFI CTRYAG 1 cut(s) 861
BstV1I GCAGC 2 cut(s) 85, 88
BstX2I RGATCY 1 cut(s) 15
BstXI CCANNNNNNTGG 1 cut(s) 649
BstYI RGATCY 1 cut(s) 15
BstZ17I GTATAC 1 cut(s) 247
Bsu36I CCTNAGG 1 cut(s) 184
BsuRI GGCC 1 cut(s) 315
BtgZI GCGATG 1 cut(s) 475
BtsCI GGATG 2 cut(s) 162, 533
Cac8I GCNNGC 1 cut(s) 402
Cfr10I RCCGGY 1 cut(s) 575
Cfr13I GGNCC 2 cut(s) 254, 619
CseI GACGC 1 cut(s) 55
CviAII CATG 5 cut(s) 308, 317, 336, 358, 600
DdeI CTNAG 5 cut(s) 85, 152, 184, 195, 461
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 761
EarI CTCTTC 1 cut(s) 761
Eco130I CCWWGG 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 729
Eco32I GATATC 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 254, 619
Eco57I CTGAAG 1 cut(s) 831
Eco81I CCTNAGG 1 cut(s) 184
Eco91I GGTNACC 1 cut(s) 571
EcoO109I RGGNCCY 2 cut(s) 254, 619
EcoO65I GGTNACC 1 cut(s) 571
EcoRII CCWGG 2 cut(s) 270, 687
EcoRV GATATC 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 5 cut(s) 311, 320, 339, 361, 603
FalI AAGNNNNNCTT 4 cut(s) 335, 367, 422, 454
FaqI GGGAC 1 cut(s) 240
FatI CATG 5 cut(s) 307, 316, 335, 357, 599
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 99, 102, 231
FokI GGATG 2 cut(s) 169, 540
FriOI GRGCYC 1 cut(s) 729
Fsp4HI GCNGC 3 cut(s) 99, 102, 231
GluI GCNGC 3 cut(s) 99, 102, 231
HaeIII GGCC 1 cut(s) 315
HapII CCGG 2 cut(s) 576, 623
HgaI GACGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 5 cut(s) 311, 320, 339, 361, 603
HindIII AAGCTT 3 cut(s) 49, 197, 431
HinfI GANTC 2 cut(s) 532, 824
HpaII CCGG 2 cut(s) 576, 623
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 2 cut(s) 247, 642
Hpy188I TCNGA 1 cut(s) 527
Hpy188III TCNNGA 2 cut(s) 154, 472
Hpy8I GTNNAC 2 cut(s) 247, 642
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 5 cut(s) 16, 128, 305, 333, 610
HpyCH4IV ACGT 1 cut(s) 476
HpyCH4V TGCA 5 cut(s) 12, 104, 219, 400, 680
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 230, 239, 397
HpyF3I CTNAG 5 cut(s) 85, 152, 184, 195, 461
HpySE526I ACGT 1 cut(s) 476
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 5 cut(s) 311, 320, 339, 361, 603
Kzo9I GATC 1 cut(s) 15
LguI GCTCTTC 1 cut(s) 761
Lsp1109I GCAGC 2 cut(s) 85, 88
LweI GCATC 1 cut(s) 286
MaeII ACGT 1 cut(s) 476
MaeIII GTNAC 1 cut(s) 571
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 5 cut(s) 14, 127, 314, 625, 778
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 729
MluCI AATT 2 cut(s) 564, 681
MlyI GAGTC 1 cut(s) 818
MmeI TCCRAC 2 cut(s) 393, 718
MnlI CCTC 7 cut(s) 94, 193, 365, 436, 734, 838, 841
MseI TTAA 2 cut(s) 47, 803
MslI CAYNNNNRTG 1 cut(s) 362
MspCI CTTAAG 1 cut(s) 802
MspI CCGG 2 cut(s) 576, 623
MspR9I CCNGG 3 cut(s) 272, 623, 689
MvaI CCWGG 2 cut(s) 272, 689
MwoI GCNNNNNNNGC 4 cut(s) 95, 230, 239, 397
NciI CCSGG 1 cut(s) 623
NdeII GATC 1 cut(s) 15
NlaIII CATG 5 cut(s) 311, 320, 339, 361, 603
NlaIV GGNNCC 2 cut(s) 256, 621
NmuCI GTSAC 1 cut(s) 571
PciSI GCTCTTC 1 cut(s) 761
PfeI GAWTC 1 cut(s) 532
PkrI GCNGC 3 cut(s) 100, 103, 232
PleI GAGTC 1 cut(s) 818
PpsI GAGTC 1 cut(s) 818
PpuMI RGGWCCY 2 cut(s) 254, 619
PshAI GACNNNNGTC 1 cut(s) 479
Psp5II RGGWCCY 2 cut(s) 254, 619
Psp6I CCWGG 2 cut(s) 270, 687
PspEI GGTNACC 1 cut(s) 571
PspGI CCWGG 2 cut(s) 270, 687
PspN4I GGNNCC 2 cut(s) 256, 621
PspPI GGNCC 2 cut(s) 254, 619
PspPPI RGGWCCY 2 cut(s) 254, 619
PsuI RGATCY 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 761
SaqAI TTAA 2 cut(s) 47, 803
SatI GCNGC 3 cut(s) 99, 102, 231
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 2 cut(s) 254, 619
SchI GAGTC 1 cut(s) 818
ScrFI CCNGG 3 cut(s) 272, 623, 689
SduI GDGCHC 1 cut(s) 729
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 861
SinI GGWCC 2 cut(s) 254, 619
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 802
SmoI CTYRAG 1 cut(s) 802
Sse9I AATT 2 cut(s) 564, 681
SsiI CCGC 2 cut(s) 230, 561
StyD4I CCNGG 3 cut(s) 270, 621, 687
StyI CCWWGG 1 cut(s) 173
TaiI ACGT 1 cut(s) 479
TaqI TCGA 1 cut(s) 300
TasI AATT 2 cut(s) 564, 681
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 1 cut(s) 532
Tru1I TTAA 2 cut(s) 47, 803
Tru9I TTAA 2 cut(s) 47, 803
TseFI GTSAC 1 cut(s) 571
TseI GCWGC 2 cut(s) 98, 101
Tsp45I GTSAC 1 cut(s) 571
TspDTI ATGAA 5 cut(s) 18, 324, 428, 528, 807
Vha464I CTTAAG 1 cut(s) 802
VpaK11BI GGWCC 2 cut(s) 254, 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.