Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006280

Physical Location & Seq

Genomic Coordinates Reverse (-)

57091885 .. 57096655

Gene Structure 4771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00039430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAAGCAGGAAGAAGTGGAAGCAAGAAGCCTTACTTGGTCGTTATTGTGATACAAACAATATATGCAGGCATGTTCTTGCTCTCCAAGGCTGCATTGAATGGTGGCATGAACACTTATGTGTTTGTGTTTTATAGACAGGCTGCTGCAACTCTCTTTTTAGTTCCTCTTGCTCTTTTTCTCGAATGGAAAACGGCGCCACCGCTGTCTTTCATGACCTTCTGCAAGATTTTTCTGCTTTCATTTTTTGGGATTACCGTAAGCTTGGACTTCTGTGGCGTTGGCCTTCTTTATACCTCGGCGACTTTGTCTGCTGCAATCAGAAACAGCCTTCCTGTCATTACTTTTCTCTTGGCACTTCTACTCAGGATGGAAGTATTGAAGCTAAGGACAACCTCAGGTGTGGCTAAGCTTGCAGGCATATTATTTTGCACGGCAGGGGTGGTGACCCTGGCCGTATACAAAGGCCCCCGTTTGAATCTCCTGGGGCATCATAATCTCTTTCATCACCATAACATCCAAGAACATGAAGGCCATGTTCCATCTGGAAAAACATGGATAAAGGGTTGCTTCCTCGTGCTGATGTGCCACATCTTTTGGGGCTTGTGGCTTGTGTTGCAGTTTTCCCTTGGAGGTGATATAGGCAGGAGTTATGAAAAGCTACCCTTCAATGCTTCGTTCACAACTCTACAATGCTTTCTAAGTTCAATCCGGACGTTTGCCATTGCCATCGCTGTTGAGAGAAACCCCTATCAATGGAAGCTCGGATGGAATCTCAAACTTGTGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

263

Amino Acids

29.25

Weight (kDa)

9.7

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	12 - 136	7.3e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64700 AT5G64700
fragaria_vesca	FvH4_1g23640 FvH4_1g23640
prunus_persica	Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0119241
rosa_laevigata	RLG00000018458 RLG00000034036
rosa_multiflora	Rmu_sc0001140.1_g000010 Rmu_sc0004760.1_g000012 Rmu_sc0007618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039430 Rroxscaffold_2G00124410
rosa_rugosa	Rorug02G0221200 Rorug05G0190500.1
rosa_samantha	Rh2AG279200 Rh2BG290000 Rh2DG285100 Rh2DG304100 Rh5AG276500 Rh5BG281500 Rh5CG313500 Rh5DG289500
rosa_wichuraiana	Rw2G022200 Rw5G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	459
AccIII	TCCGGA	1 cut(s)	711
AciI	CCGC	1 cut(s)	203
AcoI	YGGCCR	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	756
AgsI	TTSAA	5 cut(s)	100, 382, 478, 670, 708
AjnI	CCWGG	2 cut(s)	450, 483
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	5 cut(s)	264, 385, 412, 661, 763
AluI	AGCT	5 cut(s)	264, 385, 412, 661, 763
Aor13HI	TCCGGA	1 cut(s)	711
AoxI	GGCC	4 cut(s)	283, 453, 466, 532
ApeKI	GCWGC	4 cut(s)	92, 143, 146, 314
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	3 cut(s)	457, 500, 647
AxyI	CCTNAGG	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	196
BauI	CACGAG	1 cut(s)	575
BbvI	GCAGC	4 cut(s)	79, 130, 133, 301
BccI	CCATC	4 cut(s)	364, 550, 737, 762
BceAI	ACGGC	3 cut(s)	210, 440, 450
BciT130I	CCWGG	2 cut(s)	452, 485
BfoI	RGCGCY	1 cut(s)	200
BisI	GCNGC	4 cut(s)	93, 144, 147, 315
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	4 cut(s)	94, 145, 148, 316
Bme1390I	CCNGG	2 cut(s)	452, 485
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	198, 469
BmrFI	CCNGG	2 cut(s)	452, 485
BmsI	GCATC	1 cut(s)	499
Bpu10I	CCTNAGC	1 cut(s)	386
Bpu1102I	GCTNAGC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	5 cut(s)	87, 297, 450, 484, 628
BsaWI	WCCGGW	1 cut(s)	711
Bsc4I	CCNNNNNNNGG	1 cut(s)	756
Bse21I	CCTNAGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	723
BseAI	TCCGGA	1 cut(s)	711
BseBI	CCWGG	2 cut(s)	452, 485
BseDI	CCNNGG	5 cut(s)	87, 297, 450, 484, 628
BseGI	GGATG	3 cut(s)	375, 516, 773
BseLI	CCNNNNNNNGG	1 cut(s)	756
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	2 cut(s)	379, 411
BseXI	GCAGC	4 cut(s)	79, 130, 133, 301
BshFI	GGCC	4 cut(s)	285, 455, 468, 534
BshNI	GGYRCC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	712
BslI	CCNNNNNNNGG	1 cut(s)	756
BsnI	GGCC	4 cut(s)	285, 455, 468, 534
Bsp13I	TCCGGA	1 cut(s)	711
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	4 cut(s)	285, 455, 468, 534
BspCNI	CTCAG	2 cut(s)	378, 410
BspEI	TCCGGA	1 cut(s)	711
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	198, 469
BspT107I	GGYRCC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	723
BssECI	CCNNGG	5 cut(s)	87, 297, 450, 484, 628
BssNAI	GTATAC	1 cut(s)	460
BssNI	GRCGYC	1 cut(s)	197
BssSI	CACGAG	1 cut(s)	575
BssT1I	CCWWGG	2 cut(s)	87, 628
Bst1107I	GTATAC	1 cut(s)	460
Bst2BI	CACGAG	1 cut(s)	575
Bst2UI	CCWGG	2 cut(s)	452, 485
Bst4CI	ACNGT	1 cut(s)	259
BstACI	GRCGYC	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	70, 414, 418
BstDEI	CTNAG	5 cut(s)	365, 386, 397, 408, 701
BstEII	GGTNACC	1 cut(s)	445
BstF5I	GGATG	3 cut(s)	375, 516, 773
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 616
BstNI	CCWGG	2 cut(s)	452, 485
BstNSI	RCATGY	1 cut(s)	76
BstPI	GGTNACC	1 cut(s)	445
BstSCI	CCNGG	2 cut(s)	450, 483
BstV1I	GCAGC	4 cut(s)	79, 130, 133, 301
BstZ17I	GTATAC	1 cut(s)	460
Bsu36I	CCTNAGG	1 cut(s)	397
BsuRI	GGCC	4 cut(s)	285, 455, 468, 534
BtgZI	GCGATG	1 cut(s)	715
BtsCI	GGATG	3 cut(s)	375, 516, 773
Cac8I	GCNNGC	3 cut(s)	70, 414, 418
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	467
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	6 cut(s)	73, 109, 214, 527, 536, 555
DdeI	CTNAG	5 cut(s)	365, 386, 397, 408, 701
DinI	GGCGCC	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	453
Eco130I	CCWWGG	2 cut(s)	87, 628
Eco81I	CCTNAGG	1 cut(s)	397
Eco91I	GGTNACC	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	467
EcoO65I	GGTNACC	1 cut(s)	445
EcoRII	CCWGG	2 cut(s)	450, 483
EcoT14I	CCWWGG	2 cut(s)	87, 628
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
ErhI	CCWWGG	2 cut(s)	87, 628
FaeI	CATG	6 cut(s)	76, 112, 217, 530, 539, 558
FalI	AAGNNNNNCTT	6 cut(s)	20, 52, 554, 586, 650, 682
FatI	CATG	6 cut(s)	72, 108, 213, 526, 535, 554
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	4 cut(s)	93, 144, 147, 315
FokI	GGATG	3 cut(s)	382, 503, 780
Fsp4HI	GCNGC	4 cut(s)	93, 144, 147, 315
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	4 cut(s)	93, 144, 147, 315
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	4 cut(s)	285, 455, 468, 534
HapII	CCGG	1 cut(s)	712
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	6 cut(s)	76, 112, 217, 530, 539, 558
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HindIII	AAGCTT	2 cut(s)	262, 410
HinfI	GANTC	2 cut(s)	478, 772
HpaII	CCGG	1 cut(s)	712
HphI	GGTGA	3 cut(s)	457, 500, 647
Hpy166II	GTNNAC	2 cut(s)	460, 681
Hpy188I	TCNGA	2 cut(s)	323, 767
Hpy188III	TCNNGA	5 cut(s)	182, 214, 367, 546, 712
Hpy8I	GTNNAC	2 cut(s)	460, 681
HpyAV	CCTTC	5 cut(s)	229, 296, 341, 524, 676
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	716
HpyCH4V	TGCA	8 cut(s)	68, 95, 149, 225, 317, 416, 432, 619
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 616
HpyF3I	CTNAG	5 cut(s)	365, 386, 397, 408, 701
HpySE526I	ACGT	1 cut(s)	716
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	6 cut(s)	76, 112, 217, 530, 539, 558
HspAI	GCGC	1 cut(s)	197
KasI	GGCGCC	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	711
Lsp1109I	GCAGC	4 cut(s)	79, 130, 133, 301
LweI	GCATC	1 cut(s)	499
MaeII	ACGT	1 cut(s)	716
MaeIII	GTNAC	1 cut(s)	445
MboII	GAAGA	1 cut(s)	24
Mly113I	GGCGCC	1 cut(s)	197
MnlI	CCTC	5 cut(s)	177, 307, 406, 584, 626
MroI	TCCGGA	1 cut(s)	711
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	1 cut(s)	712
MspR9I	CCNGG	2 cut(s)	452, 485
MvaI	CCWGG	2 cut(s)	452, 485
MwoI	GCNNNNNNNGC	2 cut(s)	413, 616
NarI	GGCGCC	1 cut(s)	197
NlaIII	CATG	6 cut(s)	76, 112, 217, 530, 539, 558
NlaIV	GGNNCC	2 cut(s)	198, 469
NmeAIII	GCCGAG	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	445
NspI	RCATGY	1 cut(s)	76
OliI	CACNNNNGTG	1 cut(s)	119
PagI	TCATGA	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	478, 772
PflFI	GACNNNGTC	1 cut(s)	307
PkrI	GCNGC	4 cut(s)	94, 145, 148, 316
PluTI	GGCGCC	1 cut(s)	200
Psp6I	CCWGG	2 cut(s)	450, 483
PspEI	GGTNACC	1 cut(s)	445
PspGI	CCWGG	2 cut(s)	450, 483
PspN4I	GGNNCC	2 cut(s)	198, 469
PspPI	GGNCC	1 cut(s)	467
PsyI	GACNNNGTC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	119
SatI	GCNGC	4 cut(s)	93, 144, 147, 315
Sau96I	GGNCC	1 cut(s)	467
ScrFI	CCNGG	2 cut(s)	452, 485
SfaNI	GCATC	1 cut(s)	499
SfoI	GGCGCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	119
SsiI	CCGC	1 cut(s)	203
SspDI	GGCGCC	1 cut(s)	196
StyD4I	CCNGG	2 cut(s)	450, 483
StyI	CCWWGG	2 cut(s)	87, 628
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	719
TaqI	TCGA	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	478, 772
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	4 cut(s)	92, 143, 146, 314
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	6 cut(s)	125, 202, 231, 494, 543, 669
Tth111I	GACNNNGTC	1 cut(s)	307
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.