Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006280

Physical Location & Seq

Genomic Coordinates Forward (+)

37292704 .. 37307483

Gene Structure 14780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G026010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGACCTTCTGCAAGATTTTTCTGCTTTCATTTTTCGGGATTACTGTAAGCTTGGACTTCTGTGGCGTTGGCCTTCTTTATACCTCGGCGACTTTGTCTGCAGCAATCAGAAACAGCCTTCCTGTCATTACTTTTCTCTTGGCACTTCTACTGAGGATGGAAGTATTGAAGCTAAGGACAACCTCAGGTGTGGCTAAGCTTGCAGGCATATTATTTTGCACGGCAGGGGTGGTGACCCTGGCCGTATACAAAGGCCCCCGTTTGAATCTCCTGGGGCATCATAATCTCTTTCATCACCATAACATCCAAGAGCATGAAGGCCATGTTCCATCGGGAAAAACATGGATAATGGGTTGCTTCCTCGTGCTGATGTGCCACATTTTTTGGGGCTTGTGGCTTGTGTTGCAGGCAGGAGTTATGAAAAGCTACCCTTCAATGCTTCTCTTCACAACCCTACAATGCTTTCTAAGTTCAATCCAGACGTTTGTCATTGCCATCGCTGTTGAGAGAAACCCCTATCAATGGAAGCTCGGATGGAATCTCAAACTTGTGGCAGTAGCTTACAGCGGAATTGTTGTTACCGGCATTACTTTCCATTTACAAGCGTGGGTAATCGAGAAGAAGGATCCAGTTTTCTTGGCTATGTCGACACCATTGGCTTCTATCATCACACTCTTTGCTTCTGCAATTCTCTTGGGAGAAATCATTAGTCTGGGAAGTATCTTAGGTGGGCTCTTATTGGTTGGAGGGCTTTATAGTGTTTTATGGGCGAAGAGCAGAGAGCAAAGTATAGTTGATGAGAGTTGCTTAAGAGCTGAAGCAAGGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

276

Amino Acids

30.3

Weight (kDa)

9.13

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	117 - 255	3.2e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64700 AT5G64700
fragaria_vesca	FvH4_1g23640 FvH4_1g23640
prunus_persica	Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0119241
rosa_laevigata	RLG00000018458 RLG00000034036
rosa_multiflora	Rmu_sc0001140.1_g000010 Rmu_sc0004760.1_g000012 Rmu_sc0007618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039430 Rroxscaffold_2G00124410
rosa_rugosa	Rorug02G0221200 Rorug05G0190500.1
rosa_samantha	Rh2AG279200 Rh2BG290000 Rh2DG285100 Rh2DG304100 Rh5AG276500 Rh5BG281500 Rh5CG313500 Rh5DG289500
rosa_wichuraiana	Rw2G022200 Rw5G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	246, 647
AciI	CCGC	1 cut(s)	567
AclWI	GGATC	2 cut(s)	620, 633
AcoI	YGGCCR	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	522
AflII	CTTAAG	1 cut(s)	808
AgsI	TTSAA	4 cut(s)	169, 265, 435, 474
AjnI	CCWGG	2 cut(s)	237, 270
AluBI	AGCT	7 cut(s)	51, 172, 199, 426, 529, 560, 815
AluI	AGCT	7 cut(s)	51, 172, 199, 426, 529, 560, 815
AlwI	GGATC	2 cut(s)	620, 633
AoxI	GGCC	4 cut(s)	70, 240, 253, 319
ApeKI	GCWGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	244, 287
AxyI	CCTNAGG	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	735
BauI	CACGAG	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	4 cut(s)	151, 337, 503, 528
BceAI	ACGGC	2 cut(s)	227, 237
BciT130I	CCWGG	2 cut(s)	239, 272
BfmI	CTRYAG	1 cut(s)	99
BfrI	CTTAAG	1 cut(s)	808
BisI	GCNGC	1 cut(s)	102
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	2 cut(s)	239, 272
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	256, 627
BmrFI	CCNGG	2 cut(s)	239, 272
BmsI	GCATC	1 cut(s)	286
BoxI	GACNNNNGTC	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	195
BsaJI	CCNNGG	3 cut(s)	84, 237, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	522
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	629
Bse21I	CCTNAGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	489
BseBI	CCWGG	2 cut(s)	239, 272
BseDI	CCNNGG	3 cut(s)	84, 237, 271
BseGI	GGATG	3 cut(s)	162, 303, 539
BseLI	CCNNNNNNNGG	1 cut(s)	522
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	2 cut(s)	143, 198
BseNI	ACTGG	1 cut(s)	629
BseXI	GCAGC	1 cut(s)	113
BshFI	GGCC	4 cut(s)	72, 242, 255, 321
BsiSI	CCGG	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	522
BsnI	GGCC	4 cut(s)	72, 242, 255, 321
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp143I	GATC	1 cut(s)	625
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	4 cut(s)	72, 242, 255, 321
BspCNI	CTCAG	2 cut(s)	144, 197
BspLI	GGNNCC	2 cut(s)	256, 627
BspMAI	CTGCAG	1 cut(s)	103
BspPI	GGATC	2 cut(s)	620, 633
BspQI	GCTCTTC	1 cut(s)	767
BspTI	CTTAAG	1 cut(s)	808
BsrDI	GCAATG	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	1 cut(s)	629
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	3 cut(s)	84, 237, 271
BssMI	GATC	1 cut(s)	625
BssNAI	GTATAC	1 cut(s)	247
BssSI	CACGAG	1 cut(s)	362
Bst1107I	GTATAC	1 cut(s)	247
Bst2BI	CACGAG	1 cut(s)	362
Bst2UI	CCWGG	2 cut(s)	239, 272
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	2 cut(s)	449, 767
BstAFI	CTTAAG	1 cut(s)	808
BstC8I	GCNNGC	3 cut(s)	201, 205, 408
BstDEI	CTNAG	6 cut(s)	152, 173, 184, 195, 467, 724
BstEII	GGTNACC	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	162, 303, 539
BstKTI	GATC	1 cut(s)	628
BstMBI	GATC	1 cut(s)	625
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 403
BstNI	CCWGG	2 cut(s)	239, 272
BstPAI	GACNNNNGTC	1 cut(s)	485
BstPI	GGTNACC	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	237, 270
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BstZ17I	GTATAC	1 cut(s)	247
Bsu36I	CCTNAGG	1 cut(s)	184
BsuRI	GGCC	4 cut(s)	72, 242, 255, 321
BtgZI	GCGATG	1 cut(s)	481
BtsCI	GGATG	3 cut(s)	162, 303, 539
Cac8I	GCNNGC	3 cut(s)	201, 205, 408
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	254
CspCI	CAANNNNNGTGG	2 cut(s)	365, 400
CviAII	CATG	3 cut(s)	314, 323, 342
DdeI	CTNAG	6 cut(s)	152, 173, 184, 195, 467, 724
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	2 cut(s)	449, 767
EarI	CTCTTC	2 cut(s)	449, 767
Eco24I	GRGCYC	1 cut(s)	735
Eco81I	CCTNAGG	1 cut(s)	184
Eco91I	GGTNACC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	237, 270
EcoT38I	GRGCYC	1 cut(s)	735
FaeI	CATG	3 cut(s)	317, 326, 345
FalI	AAGNNNNNCTT	2 cut(s)	415, 447
FatI	CATG	3 cut(s)	313, 322, 341
FblI	GTMKAC	2 cut(s)	246, 647
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	3 cut(s)	169, 290, 546
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	4 cut(s)	72, 242, 255, 321
HapII	CCGG	1 cut(s)	582
Hin1II	CATG	3 cut(s)	317, 326, 345
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HindIII	AAGCTT	2 cut(s)	49, 197
HinfI	GANTC	2 cut(s)	265, 538
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	2 cut(s)	244, 287
Hpy166II	GTNNAC	2 cut(s)	247, 648
Hpy188I	TCNGA	2 cut(s)	110, 533
Hpy188III	TCNNGA	4 cut(s)	37, 333, 478, 616
Hpy8I	GTNNAC	2 cut(s)	247, 648
HpyAV	CCTTC	6 cut(s)	16, 83, 128, 311, 441, 616
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	6 cut(s)	12, 101, 203, 219, 406, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 403
HpyF3I	CTNAG	6 cut(s)	152, 173, 184, 195, 467, 724
HpySE526I	ACGT	1 cut(s)	482
Hsp92II	CATG	3 cut(s)	317, 326, 345
Kzo9I	GATC	1 cut(s)	625
LguI	GCTCTTC	1 cut(s)	767
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	1 cut(s)	286
MaeII	ACGT	1 cut(s)	482
MaeIII	GTNAC	2 cut(s)	232, 577
MalI	GATC	1 cut(s)	627
MboI	GATC	1 cut(s)	625
MboII	GAAGA	3 cut(s)	436, 631, 784
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	1 cut(s)	735
MluCI	AATT	2 cut(s)	570, 687
MmeI	TCCRAC	1 cut(s)	724
MnlI	CCTC	5 cut(s)	94, 147, 193, 371, 740
MseI	TTAA	1 cut(s)	809
MspA1I	CMGCKG	1 cut(s)	567
MspCI	CTTAAG	1 cut(s)	808
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	2 cut(s)	239, 272
MvaI	CCWGG	2 cut(s)	239, 272
MwoI	GCNNNNNNNGC	2 cut(s)	200, 403
NdeII	GATC	1 cut(s)	625
NlaIII	CATG	3 cut(s)	317, 326, 345
NlaIV	GGNNCC	2 cut(s)	256, 627
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	232
PciSI	GCTCTTC	1 cut(s)	767
PfeI	GAWTC	2 cut(s)	265, 538
PflFI	GACNNNGTC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	103
PshAI	GACNNNNGTC	1 cut(s)	485
Psp6I	CCWGG	2 cut(s)	237, 270
PspEI	GGTNACC	1 cut(s)	232
PspGI	CCWGG	2 cut(s)	237, 270
PspN4I	GGNNCC	2 cut(s)	256, 627
PspPI	GGNCC	1 cut(s)	254
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	625
PsyI	GACNNNGTC	1 cut(s)	94
SalI	GTCGAC	1 cut(s)	646
SapI	GCTCTTC	1 cut(s)	767
SaqAI	TTAA	1 cut(s)	809
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	625
Sau96I	GGNCC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	239, 272
SduI	GDGCHC	1 cut(s)	735
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	808
SmoI	CTYRAG	1 cut(s)	808
Sse9I	AATT	2 cut(s)	570, 687
SsiI	CCGC	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	237, 270
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	2 cut(s)	615, 647
TasI	AATT	2 cut(s)	570, 687
TfiI	GAWTC	2 cut(s)	265, 538
Tru1I	TTAA	1 cut(s)	809
Tru9I	TTAA	1 cut(s)	809
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	4 cut(s)	18, 281, 330, 434
Tth111I	GACNNNGTC	1 cut(s)	94
Vha464I	CTTAAG	1 cut(s)	808
XmiI	GTMKAC	2 cut(s)	246, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.