Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004760.1

Orthogroup ID

OG0006280

Physical Location & Seq

Genomic Coordinates Forward (+)

64749 .. 66152

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004760.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggaagtattgaagccaaggacaacctcaggtttggctaagcttgtaggcatattattttgcacggcaggggcggcgacccttgccgtatacaaaggtccccatttcaatctcctggggcatcataatctcttacatcatatcgaagaacatgaaggccatgttccttctggcaaaacatggataaagggttgcttcctcatgctgatgtccaacaccttttggggcttgtggcttgttttgcaggcacgagttatgaaaagctacccctcaaagcttctctttactactctacaatgctttctaagttcaatccagacgtttgtcattgccatcgctgttgagagaaacccctatgaatggaagctcggatggaatctcaaacttgttgccatagcttactgcggaattgtggtgaccggcattacttaccatttacaagcatgggtaatggagaagaaggacccggttttcttggctatgtccacaccattggctttggtcatcacactctttgcttctgcaattctcctgggagaaatcattagtctgggaagtatcttgggtgggctcttattggttggagggctttatagtgttttatgggcgaagagcagagagcagagtatagttgatgaaagttgcttaagagctgaagttgtcaaagactcctcaaaactgaaagaaacagaggacttcgtttctgtagcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

237

Amino Acids

26.16

Weight (kDa)

8.55

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64700 AT5G64700
fragaria_vesca	FvH4_1g23640 FvH4_1g23640
prunus_persica	Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0119241
rosa_laevigata	RLG00000018458 RLG00000034036
rosa_multiflora	Rmu_sc0001140.1_g000010 Rmu_sc0004760.1_g000012 Rmu_sc0007618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039430 Rroxscaffold_2G00124410
rosa_rugosa	Rorug02G0221200 Rorug05G0190500.1
rosa_samantha	Rh2AG279200 Rh2BG290000 Rh2DG285100 Rh2DG304100 Rh5AG276500 Rh5BG281500 Rh5CG313500 Rh5DG289500
rosa_wichuraiana	Rw2G022200 Rw5G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	2 cut(s)	74, 405
AcuI	CTGAAG	1 cut(s)	675
AfiI	CCNNNNNNNGG	1 cut(s)	360
AflII	CTTAAG	1 cut(s)	646
AgsI	TTSAA	3 cut(s)	13, 109, 312
AjnI	CCWGG	2 cut(s)	114, 531
AluBI	AGCT	6 cut(s)	43, 264, 277, 367, 398, 653
AluI	AGCT	6 cut(s)	43, 264, 277, 367, 398, 653
AoxI	GGCC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	98, 463
AsuC2I	CCSGG	1 cut(s)	467
AsuHPI	GGTGA	1 cut(s)	427
AvaII	GGWCC	2 cut(s)	98, 463
AxyI	CCTNAGG	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	573
BauI	CACGAG	1 cut(s)	249
BccI	CCATC	2 cut(s)	341, 366
BceAI	ACGGC	2 cut(s)	71, 81
BciT130I	CCWGG	2 cut(s)	116, 533
BcnI	CCSGG	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	705
BfrI	CTTAAG	1 cut(s)	646
BisI	GCNGC	1 cut(s)	75
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	3 cut(s)	116, 467, 533
Bme18I	GGWCC	2 cut(s)	98, 463
BmgT120I	GGNCC	2 cut(s)	98, 463
BmiI	GGNNCC	2 cut(s)	100, 465
BmrFI	CCNGG	3 cut(s)	116, 467, 533
BmsI	GCATC	1 cut(s)	130
BoxI	GACNNNNGTC	1 cut(s)	323
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	467
BsaJI	CCNNGG	3 cut(s)	17, 115, 532
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse118I	RCCGGY	1 cut(s)	419
Bse21I	CCTNAGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	116, 533
BseDI	CCNNGG	3 cut(s)	17, 115, 532
BseGI	GGATG	1 cut(s)	377
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	661
BshFI	GGCC	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	420, 467
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	74, 405
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	100, 465
BspQI	GCTCTTC	1 cut(s)	605
BspTI	CTTAAG	1 cut(s)	646
BsrDI	GCAATG	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	17, 115, 532
BssNAI	GTATAC	1 cut(s)	91
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	17
Bst1107I	GTATAC	1 cut(s)	91
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	116, 533
Bst6I	CTCTTC	1 cut(s)	605
BstAFI	CTTAAG	1 cut(s)	646
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	28, 39, 305
BstEII	GGTNACC	1 cut(s)	415
BstF5I	GGATG	1 cut(s)	377
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 83, 241
BstNI	CCWGG	2 cut(s)	116, 533
BstPAI	GACNNNNGTC	1 cut(s)	323
BstPI	GGTNACC	1 cut(s)	415
BstSCI	CCNGG	3 cut(s)	114, 465, 531
BstSFI	CTRYAG	1 cut(s)	705
BstXI	CCANNNNNNTGG	1 cut(s)	493
BstZ17I	GTATAC	1 cut(s)	91
Bsu36I	CCTNAGG	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	159
BtgZI	GCGATG	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	246
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	98, 463
CviAII	CATG	5 cut(s)	152, 161, 180, 202, 444
DdeI	CTNAG	3 cut(s)	28, 39, 305
Eam1104I	CTCTTC	1 cut(s)	605
EarI	CTCTTC	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	573
Eco47I	GGWCC	2 cut(s)	98, 463
Eco57I	CTGAAG	1 cut(s)	675
Eco81I	CCTNAGG	1 cut(s)	28
Eco91I	GGTNACC	1 cut(s)	415
EcoO109I	RGGNCCY	2 cut(s)	98, 463
EcoO65I	GGTNACC	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	114, 531
EcoT14I	CCWWGG	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	5 cut(s)	155, 164, 183, 205, 447
FalI	AAGNNNNNCTT	4 cut(s)	179, 211, 266, 298
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	5 cut(s)	151, 160, 179, 201, 443
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	384
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	2 cut(s)	420, 467
Hin1II	CATG	5 cut(s)	155, 164, 183, 205, 447
HindIII	AAGCTT	2 cut(s)	41, 275
HinfI	GANTC	2 cut(s)	376, 668
HpaII	CCGG	2 cut(s)	420, 467
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	91, 486
Hpy188I	TCNGA	1 cut(s)	371
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	2 cut(s)	91, 486
HpyAV	CCTTC	3 cut(s)	149, 177, 454
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	3 cut(s)	63, 244, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 83, 241
HpyF3I	CTNAG	3 cut(s)	28, 39, 305
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	5 cut(s)	155, 164, 183, 205, 447
LguI	GCTCTTC	1 cut(s)	605
LweI	GCATC	1 cut(s)	130
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	415
MboII	GAAGA	3 cut(s)	158, 469, 622
MhlI	GDGCHC	1 cut(s)	573
MluCI	AATT	2 cut(s)	408, 525
MlyI	GAGTC	1 cut(s)	662
MmeI	TCCRAC	2 cut(s)	237, 562
MnlI	CCTC	6 cut(s)	37, 209, 280, 578, 682, 685
MseI	TTAA	1 cut(s)	647
MslI	CAYNNNNRTG	1 cut(s)	206
MspCI	CTTAAG	1 cut(s)	646
MspI	CCGG	2 cut(s)	420, 467
MspR9I	CCNGG	3 cut(s)	116, 467, 533
MvaI	CCWGG	2 cut(s)	116, 533
MwoI	GCNNNNNNNGC	3 cut(s)	74, 83, 241
NciI	CCSGG	1 cut(s)	467
NlaIII	CATG	5 cut(s)	155, 164, 183, 205, 447
NlaIV	GGNNCC	2 cut(s)	100, 465
NmuCI	GTSAC	1 cut(s)	415
PciSI	GCTCTTC	1 cut(s)	605
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	662
PpsI	GAGTC	1 cut(s)	662
PpuMI	RGGWCCY	2 cut(s)	98, 463
PshAI	GACNNNNGTC	1 cut(s)	323
Psp5II	RGGWCCY	2 cut(s)	98, 463
Psp6I	CCWGG	2 cut(s)	114, 531
PspEI	GGTNACC	1 cut(s)	415
PspGI	CCWGG	2 cut(s)	114, 531
PspN4I	GGNNCC	2 cut(s)	100, 465
PspPI	GGNCC	2 cut(s)	98, 463
PspPPI	RGGWCCY	2 cut(s)	98, 463
RseI	CAYNNNNRTG	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	605
SaqAI	TTAA	1 cut(s)	647
SatI	GCNGC	1 cut(s)	75
Sau96I	GGNCC	2 cut(s)	98, 463
SchI	GAGTC	1 cut(s)	662
ScrFI	CCNGG	3 cut(s)	116, 467, 533
SduI	GDGCHC	1 cut(s)	573
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	1 cut(s)	705
SinI	GGWCC	2 cut(s)	98, 463
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
Sse9I	AATT	2 cut(s)	408, 525
SsiI	CCGC	2 cut(s)	74, 405
StyD4I	CCNGG	3 cut(s)	114, 465, 531
StyI	CCWWGG	1 cut(s)	17
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	1 cut(s)	144
TasI	AATT	2 cut(s)	408, 525
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	647
Tru9I	TTAA	1 cut(s)	647
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	4 cut(s)	168, 272, 372, 651
Vha464I	CTTAAG	1 cut(s)	646
VpaK11BI	GGWCC	2 cut(s)	98, 463
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.