Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006280

Physical Location & Seq

Genomic Coordinates Forward (+)

58706232 .. 58711509

Gene Structure 5278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAAACAGGAAGAAGCAGCAGCAGGAAGCCTTACTTGGTTGTTATTCTGATACAAACAATATATGCAGGCATGTTCTTGCTCTCCAAGGCTGCATTCAATGGCGGCATGAACACTTTCGTATTTGTTTTTTATAGACAGGCTGCTGCAACTCTCTTTCTAGTTCCTCTTGCTCTTTTTCTCGAATGGAAAACTGCGCCACCGCTGTCTTTCATGACCTTCTGCAAGATCTTTCTTCTTTCATTTTTTGGGATTACTTTAAGCTTGGACATCTATGGCGTCGCCCTTGTTTATACCTCAGCGACTTTGGCTGCTGCAATCACAAACTGCCTTCCTGTCATAACTTTCTTCTTGGCACTTCTACTTAGGATGGAAGTATTGAAGCCAAGGACAACCTCAGGTATGGCTAAGCTTGTAGGCATGCTATTTTGCACGGCAGGGGCGGTGACCCTTGCCGTATACAAAGGTCCCCATTTCAATCTCCTGGGGCATCATACTCTCTTACATCACCATAATATCGAAGAACATGAAGGCCATGTCGTTCCTTCTGGCAAAACATGGATAAAGGGTTGCTTCCTCATGCTGATGTCCAACACCTTTTGGGGCTTGTGGCTTGTTTTCCAGGCACGAGTTATGAAAAGCTACCCCTCAAAGCTTCTCTTTACTACTCTACAATGCTTTCTAAGTTCAATCCAGACTTTTGTCATTGCCATCGCTGTTGAGAGAAACCCCTATGAATGGAAGCTCGGATGGAATCTCAAACTTGTTGCGATAGCTTACTGCGGAATTGTGGTGACCGGCATTACTTACCACTTACAAGCATGGGTAATGGAGAAGAAGGATCCGGTTTTCTTGGCTATGTCCACACCAATGGCTTTGGTCATCACACTCTTTGCTTCTGCAATTCTCCTGGGAGAAATCATTAGTCTGGGAAGTATCTTGGGTGGGCTCTTATTGGTTGGAGGGCTTTATAGTGTTTTATGGGGGAAGAGCAGAGAGCAGAGTATAGTTGATGAAAGTTGCTTAAGAGCTGAAGTTGTCAAAGACTCCTCAAAACTGAAAGAAACAGAGGAGGACTTTGTTTCTGTAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

364

Amino Acids

40.34

Weight (kDa)

8.98

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	11 - 136	1.2e-10	EamA-like transporter family
EamA	PF00892	189 - 327	2.3e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64700 AT5G64700
fragaria_vesca	FvH4_1g23640 FvH4_1g23640
prunus_persica	Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0119241
rosa_laevigata	RLG00000018458 RLG00000034036
rosa_multiflora	Rmu_sc0001140.1_g000010 Rmu_sc0004760.1_g000012 Rmu_sc0007618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039430 Rroxscaffold_2G00124410
rosa_rugosa	Rorug02G0221200 Rorug05G0190500.1
rosa_samantha	Rh2AG279200 Rh2BG290000 Rh2DG285100 Rh2DG304100 Rh5AG276500 Rh5BG281500 Rh5CG313500 Rh5DG289500
rosa_wichuraiana	Rw2G022200 Rw5G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	459
AciI	CCGC	4 cut(s)	105, 203, 443, 783
AclWI	GGATC	2 cut(s)	836, 849
AcuI	CTGAAG	1 cut(s)	1053
AcyI	GRCGYC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	738
AflII	CTTAAG	1 cut(s)	1024
AgsI	TTSAA	4 cut(s)	100, 382, 478, 690
AjnI	CCWGG	3 cut(s)	483, 621, 909
AjuI	GAANNNNNNNTTGG	4 cut(s)	20, 52, 80, 112
AluBI	AGCT	7 cut(s)	264, 412, 642, 655, 745, 776, 1031
AluI	AGCT	7 cut(s)	264, 412, 642, 655, 745, 776, 1031
AlwI	GGATC	2 cut(s)	836, 849
AoxI	GGCC	1 cut(s)	532
ApeKI	GCWGC	7 cut(s)	18, 21, 92, 143, 146, 311, 314
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	3 cut(s)	457, 500, 805
AvaII	GGWCC	1 cut(s)	467
AxyI	CCTNAGG	1 cut(s)	397
BamHI	GGATCC	1 cut(s)	841
BanII	GRGCYC	1 cut(s)	951
BauI	CACGAG	1 cut(s)	627
BbvCI	CCTCAGC	1 cut(s)	298
BbvI	GCAGC	7 cut(s)	30, 33, 79, 130, 133, 298, 301
BccI	CCATC	3 cut(s)	364, 719, 744
BceAI	ACGGC	2 cut(s)	440, 450
BciT130I	CCWGG	3 cut(s)	485, 623, 911
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	1086
BfrI	CTTAAG	1 cut(s)	1024
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	8 cut(s)	19, 22, 93, 106, 144, 147, 312, 315
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	8 cut(s)	20, 23, 94, 107, 145, 148, 313, 316
Bme1390I	CCNGG	3 cut(s)	485, 623, 911
Bme18I	GGWCC	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	469, 843
BmrFI	CCNGG	3 cut(s)	485, 623, 911
BmsI	GCATC	1 cut(s)	499
BoxI	GACNNNNGTC	1 cut(s)	701
Bpu10I	CCTNAGC	1 cut(s)	298
Bpu1102I	GCTNAGC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	4 cut(s)	87, 386, 484, 910
BsaWI	WCCGGW	1 cut(s)	844
Bsc4I	CCNNNNNNNGG	1 cut(s)	738
Bse118I	RCCGGY	1 cut(s)	797
Bse21I	CCTNAGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	705
BseBI	CCWGG	3 cut(s)	485, 623, 911
BseDI	CCNNGG	4 cut(s)	87, 386, 484, 910
BseGI	GGATG	2 cut(s)	375, 755
BseLI	CCNNNNNNNGG	1 cut(s)	738
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	2 cut(s)	312, 411
BseRI	GAGGAG	2 cut(s)	1039, 1085
BseXI	GCAGC	7 cut(s)	30, 33, 79, 130, 133, 298, 301
BshFI	GGCC	1 cut(s)	534
BsiSI	CCGG	2 cut(s)	798, 845
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	738
BsmFI	GGGAC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	534
Bsp1286I	GDGCHC	1 cut(s)	951
Bsp143I	GATC	2 cut(s)	228, 841
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	4 cut(s)	105, 203, 443, 783
BspANI	GGCC	1 cut(s)	534
BspCNI	CTCAG	2 cut(s)	311, 410
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	469, 843
BspPI	GGATC	2 cut(s)	836, 849
BspQI	GCTCTTC	1 cut(s)	983
BspTI	CTTAAG	1 cut(s)	1024
BsrDI	GCAATG	1 cut(s)	705
BsrFI	RCCGGY	1 cut(s)	797
BssAI	RCCGGY	1 cut(s)	797
BssECI	CCNNGG	4 cut(s)	87, 386, 484, 910
BssMI	GATC	2 cut(s)	228, 841
BssNAI	GTATAC	1 cut(s)	460
BssNI	GRCGYC	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	627
BssT1I	CCWWGG	2 cut(s)	87, 386
Bst1107I	GTATAC	1 cut(s)	460
Bst2BI	CACGAG	1 cut(s)	627
Bst2UI	CCWGG	3 cut(s)	485, 623, 911
Bst6I	CTCTTC	1 cut(s)	983
BstACI	GRCGYC	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	1024
BstC8I	GCNNGC	2 cut(s)	70, 422
BstDEI	CTNAG	5 cut(s)	298, 365, 397, 408, 683
BstEII	GGTNACC	2 cut(s)	445, 793
BstF5I	GGATG	2 cut(s)	375, 755
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	2 cut(s)	231, 844
BstMBI	GATC	2 cut(s)	228, 841
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	3 cut(s)	485, 623, 911
BstNSI	RCATGY	2 cut(s)	76, 424
BstPAI	GACNNNNGTC	1 cut(s)	701
BstPI	GGTNACC	2 cut(s)	445, 793
BstSCI	CCNGG	3 cut(s)	483, 621, 909
BstSFI	CTRYAG	1 cut(s)	1086
BstV1I	GCAGC	7 cut(s)	30, 33, 79, 130, 133, 298, 301
BstX2I	RGATCY	2 cut(s)	228, 841
BstXI	CCANNNNNNTGG	1 cut(s)	871
BstYI	RGATCY	2 cut(s)	228, 841
BstZ17I	GTATAC	1 cut(s)	460
Bsu36I	CCTNAGG	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	534
BtgZI	GCGATG	1 cut(s)	697
BtsCI	GGATG	2 cut(s)	375, 755
Cac8I	GCNNGC	2 cut(s)	70, 422
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	797
Cfr13I	GGNCC	1 cut(s)	467
CseI	GACGC	1 cut(s)	268
CviAII	CATG	9 cut(s)	73, 109, 214, 421, 527, 536, 558, 580, 822
DdeI	CTNAG	5 cut(s)	298, 365, 397, 408, 683
DpnI	GATC	2 cut(s)	230, 843
DpnII	GATC	2 cut(s)	228, 841
Eam1104I	CTCTTC	1 cut(s)	983
EarI	CTCTTC	1 cut(s)	983
Eco130I	CCWWGG	2 cut(s)	87, 386
Eco24I	GRGCYC	1 cut(s)	951
Eco47I	GGWCC	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	1053
Eco81I	CCTNAGG	1 cut(s)	397
Eco91I	GGTNACC	2 cut(s)	445, 793
EcoO109I	RGGNCCY	1 cut(s)	467
EcoO65I	GGTNACC	2 cut(s)	445, 793
EcoRII	CCWGG	3 cut(s)	483, 621, 909
EcoT14I	CCWWGG	2 cut(s)	87, 386
EcoT38I	GRGCYC	1 cut(s)	951
ErhI	CCWWGG	2 cut(s)	87, 386
FaeI	CATG	9 cut(s)	76, 112, 217, 424, 530, 539, 561, 583, 825
FalI	AAGNNNNNCTT	6 cut(s)	20, 52, 557, 589, 644, 676
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	9 cut(s)	72, 108, 213, 420, 526, 535, 557, 579, 821
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	8 cut(s)	19, 22, 93, 106, 144, 147, 312, 315
FokI	GGATG	2 cut(s)	382, 762
FriOI	GRGCYC	1 cut(s)	951
Fsp4HI	GCNGC	8 cut(s)	19, 22, 93, 106, 144, 147, 312, 315
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	8 cut(s)	19, 22, 93, 106, 144, 147, 312, 315
HaeIII	GGCC	1 cut(s)	534
HapII	CCGG	2 cut(s)	798, 845
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	9 cut(s)	76, 112, 217, 424, 530, 539, 561, 583, 825
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HindIII	AAGCTT	3 cut(s)	262, 410, 653
HinfI	GANTC	2 cut(s)	754, 1046
HpaII	CCGG	2 cut(s)	798, 845
HphI	GGTGA	3 cut(s)	457, 500, 805
Hpy166II	GTNNAC	2 cut(s)	460, 864
Hpy188I	TCNGA	2 cut(s)	51, 749
Hpy188III	TCNNGA	3 cut(s)	182, 214, 694
Hpy8I	GTNNAC	2 cut(s)	460, 864
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	5 cut(s)	229, 341, 524, 555, 832
HpyCH4V	TGCA	7 cut(s)	68, 95, 149, 225, 317, 432, 902
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	5 cut(s)	298, 365, 397, 408, 683
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	9 cut(s)	76, 112, 217, 424, 530, 539, 561, 583, 825
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	228, 841
LguI	GCTCTTC	1 cut(s)	983
Lsp1109I	GCAGC	7 cut(s)	30, 33, 79, 130, 133, 298, 301
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	445, 793
MalI	GATC	2 cut(s)	230, 843
MboI	GATC	2 cut(s)	228, 841
MboII	GAAGA	6 cut(s)	24, 227, 340, 533, 847, 1000
MflI	RGATCY	2 cut(s)	228, 841
MhlI	GDGCHC	1 cut(s)	951
MluCI	AATT	2 cut(s)	786, 903
MlyI	GAGTC	1 cut(s)	1040
MmeI	TCCRAC	2 cut(s)	615, 940
MnlI	CCTC	9 cut(s)	177, 307, 406, 587, 658, 956, 1060, 1063, 1066
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	2 cut(s)	260, 1025
MslI	CAYNNNNRTG	2 cut(s)	584, 869
MspA1I	CMGCKG	1 cut(s)	205
MspCI	CTTAAG	1 cut(s)	1024
MspI	CCGG	2 cut(s)	798, 845
MspR9I	CCNGG	3 cut(s)	485, 623, 911
Mva1269I	GAATGC	1 cut(s)	95
MvaI	CCWGG	3 cut(s)	485, 623, 911
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	2 cut(s)	228, 841
NlaIII	CATG	9 cut(s)	76, 112, 217, 424, 530, 539, 561, 583, 825
NlaIV	GGNNCC	2 cut(s)	469, 843
NmuCI	GTSAC	2 cut(s)	445, 793
NspI	RCATGY	2 cut(s)	76, 424
PaeI	GCATGC	1 cut(s)	424
PagI	TCATGA	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	983
PctI	GAATGC	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	754
PkrI	GCNGC	8 cut(s)	20, 23, 94, 107, 145, 148, 313, 316
PleI	GAGTC	1 cut(s)	1040
PpsI	GAGTC	1 cut(s)	1040
PpuMI	RGGWCCY	1 cut(s)	467
PshAI	GACNNNNGTC	1 cut(s)	701
Psp5II	RGGWCCY	1 cut(s)	467
Psp6I	CCWGG	3 cut(s)	483, 621, 909
PspEI	GGTNACC	2 cut(s)	445, 793
PspGI	CCWGG	3 cut(s)	483, 621, 909
PspN4I	GGNNCC	2 cut(s)	469, 843
PspPI	GGNCC	1 cut(s)	467
PspPPI	RGGWCCY	1 cut(s)	467
PsuI	RGATCY	2 cut(s)	228, 841
RseI	CAYNNNNRTG	2 cut(s)	584, 869
SapI	GCTCTTC	1 cut(s)	983
SaqAI	TTAA	2 cut(s)	260, 1025
SatI	GCNGC	8 cut(s)	19, 22, 93, 106, 144, 147, 312, 315
Sau3AI	GATC	2 cut(s)	228, 841
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	1 cut(s)	1040
ScrFI	CCNGG	3 cut(s)	485, 623, 911
SduI	GDGCHC	1 cut(s)	951
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	1086
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	2 cut(s)	584, 869
SmlI	CTYRAG	1 cut(s)	1024
SmoI	CTYRAG	1 cut(s)	1024
SphI	GCATGC	1 cut(s)	424
Sse9I	AATT	2 cut(s)	786, 903
SsiI	CCGC	4 cut(s)	105, 203, 443, 783
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	3 cut(s)	483, 621, 909
StyI	CCWWGG	2 cut(s)	87, 386
TaqI	TCGA	2 cut(s)	183, 519
TasI	AATT	2 cut(s)	786, 903
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	754
Tru1I	TTAA	2 cut(s)	260, 1025
Tru9I	TTAA	2 cut(s)	260, 1025
TseFI	GTSAC	2 cut(s)	445, 793
TseI	GCWGC	7 cut(s)	18, 21, 92, 143, 146, 311, 314
Tsp45I	GTSAC	2 cut(s)	445, 793
TspDTI	ATGAA	7 cut(s)	125, 202, 231, 543, 650, 750, 1029
Vha464I	CTTAAG	1 cut(s)	1024
VpaK11BI	GGWCC	1 cut(s)	467
XceI	RCATGY	2 cut(s)	76, 424
XmiI	GTMKAC	1 cut(s)	459
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.