Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006280

Physical Location & Seq

Genomic Coordinates Reverse (-)

21392585 .. 21393641

Gene Structure 1057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0221200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGATGGAATTGCTGATGGAATAGTGGGGATTGTTGTTGGGAGTGTGGGCAGTGAGTTGGCTGGCAATGGAGGTAGAGTAGTTGGCAAGGGTGTTGTAGGCAATGCTGATTTCGGCAACGATGGGATTGATGGCAATGGCGGCATTGTAGCCTTTGGCAGAGATGGGGCAGTTGGAAGTGAAGGCAAAGGGTTTGAGGGCAGAGGTGGCAATGTGGCCTTGGGCAGTATTGGTAGTGAGCTGGCTGGCAATGGAGGTAGTGTCGCGGGCAAGGGGGTTGTCGGCACAGTAGGCAATGCTGATTTTGGCAAAGATGGGATTACAGGTGGGGTGATAGGCGGTGTAGGCAATGGGGTAGATGGCAATGGTGGCAAAGTGGCTTTTGGAAGAGTTGGGGTAGTTGGAAGTGTAGGCAAGGGGTTTGAGGGCAATGGTGGCGATGTGGCCTTGGGCAGTGTTGGTACCGAAGGCAACGGGGGCAGGGTGGCCTTAGGCAGTGTTGGTGCCGAGGGTAGTGGAGGCAATGCAGTCTTGGGTAGAGAGGGAATTGTGGGTAGTACTGGCAATGCTGGTGGAGGAGCCGCTGCTGTGTCCAAGAGGTGGCGAGCTGCTTGGCTCTTATGGGTACTTGACAGTAGCAACATCATGGCCAAAGACAGAACGAAGAAAAGCTTAGAAGAAGTCATGTTTGAGTTTATAGGAGCTGCCAAGGCAAATCTCATCAGAAAAGAAATGTTGTTTCTTGTGATGATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

252

Amino Acids

24.2

Weight (kDa)

5.64

Isoelectric Point (pI)

1.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64700 AT5G64700
fragaria_vesca	FvH4_1g23640 FvH4_1g23640
prunus_persica	Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0119241
rosa_laevigata	RLG00000018458 RLG00000034036
rosa_multiflora	Rmu_sc0001140.1_g000010 Rmu_sc0004760.1_g000012 Rmu_sc0007618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039430 Rroxscaffold_2G00124410
rosa_rugosa	Rorug02G0221200 Rorug05G0190500.1
rosa_samantha	Rh2AG279200 Rh2BG290000 Rh2DG285100 Rh2DG304100 Rh5AG276500 Rh5BG281500 Rh5CG313500 Rh5DG289500
rosa_wichuraiana	Rw2G022200 Rw5G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	461
AccB1I	GGYRCC	2 cut(s)	461, 503
AccB7I	CCANNNNNTGG	1 cut(s)	600
AccII	CGCG	1 cut(s)	266
AciI	CCGC	4 cut(s)	141, 266, 339, 582
AcoI	YGGCCR	1 cut(s)	648
AfaI	GTAC	3 cut(s)	463, 559, 627
AfiI	CCNNNNNNNGG	1 cut(s)	600
AluBI	AGCT	4 cut(s)	241, 608, 672, 704
AluI	AGCT	4 cut(s)	241, 608, 672, 704
AoxI	GGCC	4 cut(s)	216, 444, 486, 648
ApeKI	GCWGC	3 cut(s)	584, 608, 704
Asp718I	GGTACC	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	343
AxyI	CCTNAGG	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	650
BanI	GGYRCC	2 cut(s)	461, 503
BbvI	GCAGC	3 cut(s)	571, 595, 691
BccI	CCATC	6 cut(s)	11, 116, 125, 158, 308, 353
BisI	GCNGC	5 cut(s)	142, 582, 585, 609, 705
BlsI	GCNGC	5 cut(s)	143, 583, 586, 610, 706
BmcAI	AGTACT	1 cut(s)	559
BmiI	GGNNCC	3 cut(s)	463, 505, 580
BsaJI	CCNNGG	4 cut(s)	219, 447, 507, 708
BsaXI	ACNNNNNCTCC	4 cut(s)	63, 93, 246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	600
Bse1I	ACTGG	1 cut(s)	565
Bse21I	CCTNAGG	1 cut(s)	490
BseDI	CCNNGG	4 cut(s)	219, 447, 507, 708
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	600
BseNI	ACTGG	1 cut(s)	565
BseRI	GAGGAG	1 cut(s)	591
BseXI	GCAGC	3 cut(s)	571, 595, 691
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	4 cut(s)	218, 446, 488, 650
BshNI	GGYRCC	2 cut(s)	461, 503
BslI	CCNNNNNNNGG	1 cut(s)	600
BsnI	GGCC	4 cut(s)	218, 446, 488, 650
BspACI	CCGC	4 cut(s)	141, 266, 339, 582
BspANI	GGCC	4 cut(s)	218, 446, 488, 650
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	3 cut(s)	463, 505, 580
BspT107I	GGYRCC	2 cut(s)	461, 503
BsrI	ACTGG	1 cut(s)	565
BssECI	CCNNGG	4 cut(s)	219, 447, 507, 708
BssT1I	CCWWGG	3 cut(s)	219, 447, 708
Bst4CI	ACNGT	2 cut(s)	289, 635
Bst6I	CTCTTC	1 cut(s)	382
BstC8I	GCNNGC	5 cut(s)	64, 243, 247, 268, 606
BstDEI	CTNAG	2 cut(s)	490, 673
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	266
BstMWI	GCNNNNNNNGC	8 cut(s)	141, 207, 291, 345, 369, 435, 477, 710
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	3 cut(s)	571, 595, 691
Bsu36I	CCTNAGG	1 cut(s)	490
BsuRI	GGCC	4 cut(s)	218, 446, 488, 650
BtgZI	GCGATG	1 cut(s)	453
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	3 cut(s)	58, 460, 502
BtsIMutI	CAGTG	3 cut(s)	58, 460, 502
Cac8I	GCNNGC	5 cut(s)	64, 243, 247, 268, 606
Csp6I	GTAC	3 cut(s)	462, 558, 626
CspCI	CAANNNNNGTGG	2 cut(s)	553, 588
CviAII	CATG	2 cut(s)	646, 685
CviQI	GTAC	3 cut(s)	462, 558, 626
DdeI	CTNAG	2 cut(s)	490, 673
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
Eco130I	CCWWGG	3 cut(s)	219, 447, 708
Eco81I	CCTNAGG	1 cut(s)	490
EcoT14I	CCWWGG	3 cut(s)	219, 447, 708
ErhI	CCWWGG	3 cut(s)	219, 447, 708
FaeI	CATG	2 cut(s)	649, 688
FaiI	YATR	4 cut(s)	622, 647, 686, 698
FalI	AAGNNNNNCTT	2 cut(s)	656, 688
FatI	CATG	2 cut(s)	645, 684
FauI	CCCGC	1 cut(s)	259
Fnu4HI	GCNGC	5 cut(s)	142, 582, 585, 609, 705
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	5 cut(s)	142, 582, 585, 609, 705
GluI	GCNGC	5 cut(s)	142, 582, 585, 609, 705
HaeIII	GGCC	4 cut(s)	218, 446, 488, 650
Hin1II	CATG	2 cut(s)	649, 688
HindIII	AAGCTT	1 cut(s)	670
HphI	GGTGA	1 cut(s)	343
Hpy188I	TCNGA	1 cut(s)	725
HpyAV	CCTTC	2 cut(s)	176, 461
HpyCH4III	ACNGT	2 cut(s)	289, 635
HpyCH4V	TGCA	1 cut(s)	527
HpyF10VI	GCNNNNNNNGC	8 cut(s)	141, 207, 291, 345, 369, 435, 477, 710
HpyF3I	CTNAG	2 cut(s)	490, 673
Hsp92II	CATG	2 cut(s)	649, 688
KpnI	GGTACC	1 cut(s)	465
LmnI	GCTCC	2 cut(s)	578, 701
LpnPI	CCDG	7 cut(s)	48, 227, 231, 309, 466, 546, 555
Lsp1109I	GCAGC	3 cut(s)	571, 595, 691
MboII	GAAGA	3 cut(s)	399, 676, 689
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	2 cut(s)	9, 546
MluNI	TGGCCA	1 cut(s)	650
MmeI	TCCRAC	2 cut(s)	154, 382
Mox20I	TGGCCA	1 cut(s)	650
MscI	TGGCCA	1 cut(s)	650
Msp20I	TGGCCA	1 cut(s)	650
MspA1I	CMGCKG	1 cut(s)	584
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	8 cut(s)	141, 207, 291, 345, 369, 435, 477, 710
NlaIII	CATG	2 cut(s)	649, 688
NlaIV	GGNNCC	3 cut(s)	463, 505, 580
NmeAIII	GCCGAG	1 cut(s)	532
PflMI	CCANNNNNTGG	1 cut(s)	600
PkrI	GCNGC	5 cut(s)	143, 583, 586, 610, 706
PspN4I	GGNNCC	3 cut(s)	463, 505, 580
RsaI	GTAC	3 cut(s)	463, 559, 627
RsaNI	GTAC	3 cut(s)	462, 558, 626
SatI	GCNGC	5 cut(s)	142, 582, 585, 609, 705
ScaI	AGTACT	1 cut(s)	559
SetI	ASST	9 cut(s)	76, 208, 243, 259, 328, 602, 610, 674, 706
Sse9I	AATT	2 cut(s)	9, 546
SsiI	CCGC	4 cut(s)	141, 266, 339, 582
StyI	CCWWGG	3 cut(s)	219, 447, 708
TaaI	ACNGT	2 cut(s)	289, 635
TasI	AATT	2 cut(s)	9, 546
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	2 cut(s)	144, 584
TscAI	CASTG	3 cut(s)	58, 460, 502
TseI	GCWGC	3 cut(s)	584, 608, 704
TspRI	CASTG	3 cut(s)	58, 460, 502
Van91I	CCANNNNNTGG	1 cut(s)	600
ZrmI	AGTACT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.