RLG00000019775

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005246
Physical Location & Seq
Reverse (-)
56542943 .. 56553025
10083 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019775

Sequence Viewer

Length: 3816 bp
ATGAAGGCCGACGGCGCAGCACCGATGCCTGCGGCGAACAAAGGCCCTAACCCTGAGCTTCCCCTCAATCCCTCCAAATCCAAAGAAGAAGTCGAGCTCTCCTCCGACGATAATGATGAAAGAGAAAATCCGGTTTTCTCTGTTGCACGTTCCCCTGGTATCACGGTACATCCTCCAGTGCCCACGCTGCTTCCACCAGTGAATGAATCCACCCATGGGAATCAAGCAGGGAAGGCTGTATCTCTCGCAAGCTCTGCTGATATTCAGTGCCAAATCTCCAAGCAACCTACTTCCCAGAAGAACAATGACGCAAACAGAGTACCATTAAAGCCTGCTACACCTGGATGGCGTCCCCCACGTGCCCACTCGGGCCCCAACAATAGGCTTGTGATAAGCTTCTCAGATGATGACAGTCAGAGTGATTCTGAAGAAAAAGAGTGTGGGAAACTAAAAGCCTTACAATCTCAAAGTAATATGACTCGACCACCCATTTCTTCACTTGCAAACCCAAACAGGTTGGGACAGCCTGCCAGGAATGTGGACAAAGTAATGCCCAAAAAGTTGTCTGCGAATCACACATTTAACACATCAACGGCGAATATCTGTGGAATTAATTTGAGAGATTCTGTGGTTTCATCAGTTGAGCATGGATCTCGAGCTGGAAATTTCAATTCCAAGAACAAAAGTACAATGAACAGAGAGCGTGGATATGAACTTCAAGACTTGCGACAGCAGATTGCACTTAAGGAGAATGAACTGAAGCTTAAGTCCACCCAGCGAACTAAGGAATCAGTTACATGCAAGGATGATAATGCTAAGGGCCTACACAGAGATGGAGCTGGTAAGTGCACTACAGGATATTCTGAAGGTATGCATATAGAACCGAAAGAGCCAGATAAAAAGCGTATAAAAGTCAGCTGCACCTTCTCCACTCAGCTAACTGCACTAAGCCCACAAGAATTAGCTGTTGCAAAACTTTTATTACCATCAAAAACCCCAGAAATGGAGGACATTACTCTATTGGACGCCAGCAAGATTGATCATCTCCAAAAAGAAAATCAAGTGCATTCAACAGAGTCGTGCATTGTAAAATGGCAAAATCCTAATGATAAATATGTTGCTGGAATGTTGGGGAATATACATGCTGGATTGGAAGATGGTGCTGGCATCAAATATATCCAGTCTGATGGGAGGGGTAAGCAGATGGATTGCTTTGTAACACCAAACCAGTCTAAATCACTTGCAAAAATGACGTGCATAGATTTTCCAAATTACTTGAATAGTGTGGAGTTGAATCATACAAATACAAACAGAGGCCATCCAGAACCTGGATCCTTCTTAAGCAATCCAACATCAGGAATGATTCTAATGAGAAGTGGTGATCGTGACAAGAGACATGAACCCTCATTCTACAGTACATGTCAGGCACTCCTCAACAACACGAAGCTCTCGAATTGTTTTGGTAATGCAAACCTTACAGGAGATGACAACATGAAGACGCAGTCATTGGTTCAAATGGAGGAAATGCTAGACAAGAATCTGGAGGAAGCCCAAGAGCATTGGCGAAGGTGTGAAATTGAAGAACAAGCTCTTAAAGCTTGTTGTAAAGCGCAAAGGGCTCTTCTTGAGGCGAATGCTAGGTGTGATGTTCTTCATCGGAAAAGGGAACTATATGCTGGCGACTTCCGTGTTTATGATATTGGCAACCCCAATTTCTTATGTTCCTCAAGGCAGAACAAACAATCTGGACTTGGGTTGGATCACACTATTAACTTGTCTGAAAATGTGAATTTAATACCCACATCAAACCATCAGATGCCGGAGCATAATGGTTGCAATCTAGCGGTTATTGATTCCAGCATCCAATGTGTTAACAGAGCTCAGATCCCCAATTCCTACCAGCATTTGAGTGGAGAAAACATTGGCTCAGAATTATGCACTGAACCTGACGCCAGTACATCTGAGACAGTGCCTCTTCTGGGCAATAATGGCACAGATGGAGTTTGCTGTCCATCCAGTGAACCAAATGGTTCAGCAACTGAAGATGATTATACATTTTCATTGAAAATGAATCTGCTCAACCCAAAAGGCACAGGGACTGCAGTGGAACGAGAGGCTGAAAATGATACAAGAAGTGAAAAACCACAAAATGGGAGTTCTCCCTTCTCGGAGGTGGAGAAGAATCAGCAATCTGACATTGAAGGTGATGATGGGCAACAAAGTTTCACTGAGGCTCCTCTTGTGATCCAGGGAGAGGATTCCATCGAACATTTGTCTTTTAACTCTCATTCCATTGGATATTTTGAGGACAGGTGTTCCTTTGGAGGTGACCACTCATTGACTTCTATGAACTTGAGTAGTGCTTTTGGGTATATGAAGGTTATGGACCCAAACAATGTGATGGAACATCAGGACCGCAGTCAACAGACCGGAACTTGTGATACTAATATTGAAGAAGGTGCTTATATAAACTGTGGTAAAGTGCAGTTTAGTGGTACCATGGTAGACCAAACAAAAAAGGCTCTGGTGAAATTATGTGATAGAGAAGATGGCTCCTATACCATTGGTCCTGTTGTTGATCCCTTTTGGCCACTTTGCATGTATGAGCTACATGGAAAATGCAACAATGATGAGTGTCCTTGGCAGCATGGGAAGGACTACTCTACCACCATTTTGTCTCCATATCAGCATGATAATTCTGAAATTGCTGATTGTCAGGTTGAACAAACTTCATGTAAAGAAAAATGTGATGGTTCAGCAGAAGTTCCCTGGCATCACAAGAATCAACCCGATCAAGCTTTGGCTGACAATGAGCAATACTTGGAAAAGGCTCTTTTAATTTTCAGTCAGGGGGTCAATGCACTTGAGGGCTCTTCCTGTACTGTCCGAGCTCTTGAGGTTGATCCAACATCTGTAGTTCTCTGGGTCCTTTATCCGTTTATTTACTACAGCAATATGAAGTCAGTAGGGAAGGATGACATGTTCTCTTGTGCGGAAAATCCTGTTTGCTCTGTTGCACATTCCACTGGTACCAGTGTACTTCGTGCAGGCCCGATGCTAGTTCCGCCAGTGAACAAATTCACCCAGGGGAATCAAGCGGGGAAGGCTGTATCTTCCTCCAGCTCTCGAGTTTCTGGGCCGTCATCAGTTAAGCAAGGATCTCAAGCTGGAAATTTCAATTGTCTGAATGCAGAGGCTGTATGCTTGAATTCTGTGGCTGATGAGAAAGCAGAGGCCAAGCTTTGTGCATCTCAGCTGGAATTATACGAACCAGTGCAAGATGATGCACAAACTGTTCAAAGCTTAGATGGTGACAATGCTGACCTGGTGGGTCATGGGACCACGACTGTCGTCATTCGATTGGAAGTAGGAGTTATTATTGCGGTCGATTCAAGATCCGTCATAACTCATATTTTTTCCGGTACTAATATAAGAGTTAACAAAATAGTTAATGATAATGCTATGAAGTTCAAACAAATAATGCCGGGAGTTTACTTAACGGCTTCAGGAAGTGAAAGTAGAAACAAAAACTTGTGGCAGCATTTGAGAGGATTGGTGTCCAAGAGGATGTCCACCGAGATTGATTCACTTAGGCAACAGGCTCACACTTATTTGAAAAAGCATCCTGTTCCTTCAACTGCACATCGTCGTGGAATACAAGTGTTTATGGCAGGCTGGAATCAGCGAAAACAGGAGTATGTAGTTTACCGTATAGGAGATGAATATAAACAAACGTTTATACTAACATCGTTGTACGATGCAGCTGGATCTGGTAGTCATCATGCCCTCGAGGTCTTGGCTGGAATATGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

1272

Amino Acids

139.38

Weight (kDa)

5.68

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3H1 PF10650 865 - 883 2.4e-07 Putative zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 3788
Acc65I GGTACC 2 cut(s) 2495, 3029
AccB1I GGYRCC 2 cut(s) 2495, 3029
AccB7I CCANNNNNTGG 2 cut(s) 1328, 2150
AccI GTMKAC 1 cut(s) 2505
AciI CCGC 7 cut(s) 32, 1844, 2416, 2993, 3065, 3098, 3383
AclI AACGTT 1 cut(s) 3734
AcoI YGGCCR 1 cut(s) 2588
AcsI RAATTY 5 cut(s) 664, 1789, 3077, 3172, 3208
AcuI CTGAAG 5 cut(s) 447, 779, 885, 2061, 3489
AcvI CACGTG 1 cut(s) 359
AcyI GRCGYC 3 cut(s) 349, 1026, 1950
AfiI CCNNNNNNNGG 8 cut(s) 216, 381, 1003, 1328, 1355, 1979, 2150, 2254
AflII CTTAAG 3 cut(s) 743, 764, 1339
AflIII ACRYGT 2 cut(s) 1418, 2979
AjiI CACGTC 1 cut(s) 1254
AjnI CCWGG 8 cut(s) 154, 340, 530, 1327, 2247, 2768, 3084, 3324
AloI GAACNNNNNNTCC 2 cut(s) 2966, 2998
Alw21I GWGCWC 4 cut(s) 99, 851, 1882, 2893
Alw26I GTCTC 3 cut(s) 1387, 1958, 2682
Alw44I GTGCAC 1 cut(s) 847
AlwNI CAGNNNCTG 4 cut(s) 1328, 2039, 2099, 3197
Ama87I CYCGRG 4 cut(s) 367, 654, 3126, 3788
AoxI GGCC 9 cut(s) 6, 43, 370, 820, 1315, 2588, 3049, 3137, 3234
ApaI GGGCCC 1 cut(s) 374
ApaLI GTGCAC 1 cut(s) 847
ApeKI GCWGC 6 cut(s) 17, 187, 918, 2644, 3538, 3761
ApoI RAATTY 5 cut(s) 664, 1789, 3077, 3172, 3208
ArsI GACNNNNNNTTYG 2 cut(s) 75, 107
AseI ATTAAT 1 cut(s) 612
Asp700I GAANNNNTTC 1 cut(s) 3077
Asp718I GGTACC 2 cut(s) 2495, 3029
AspLEI GCGC 2 cut(s) 17, 1612
AsuC2I CCSGG 1 cut(s) 3486
AsuHPI GGTGA 6 cut(s) 1391, 2216, 2339, 2539, 3073, 3323
AvaI CYCGRG 4 cut(s) 367, 654, 3126, 3788
AvaII GGWCC 5 cut(s) 2386, 2413, 2567, 2926, 3339
BaeGI GKGCMC 4 cut(s) 183, 364, 374, 851
BaeI ACNNNNGTAYC 4 cut(s) 2487, 2520, 3021, 3054
BalI TGGCCA 1 cut(s) 2590
BamHI GGATCC 1 cut(s) 1331
BanI GGYRCC 2 cut(s) 2495, 3029
BanII GRGCYC 6 cut(s) 99, 374, 1621, 1882, 2873, 2893
BbrPI CACGTG 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 1502
Bbv12I GWGCWC 4 cut(s) 99, 851, 1882, 2893
BbvI GCAGC 6 cut(s) 29, 174, 905, 2656, 3550, 3773
BceAI ACGGC 4 cut(s) 28, 609, 3124, 3516
BcgI CGANNNNNNTGC 2 cut(s) 635, 669
BciT130I CCWGG 8 cut(s) 156, 342, 532, 1329, 2249, 2770, 3086, 3326
BclI TGATCA 1 cut(s) 1039
BcnI CCSGG 1 cut(s) 3486
BcoDI GTCTC 3 cut(s) 1387, 1958, 2682
BfaI CTAG 4 cut(s) 1529, 1638, 1841, 3059
BfmI CTRYAG 5 cut(s) 852, 1411, 2100, 2913, 2947
BfrI CTTAAG 3 cut(s) 743, 764, 1339
BisI GCNGC 7 cut(s) 18, 33, 188, 919, 2645, 3539, 3762
BlsI GCNGC 7 cut(s) 19, 34, 189, 920, 2646, 3540, 3763
Bme1390I CCNGG 9 cut(s) 156, 342, 532, 1329, 2249, 2770, 3086, 3326, 3486
Bme18I GGWCC 5 cut(s) 2386, 2413, 2567, 2926, 3339
BmeT110I CYCGRG 4 cut(s) 367, 654, 3126, 3788
BmgBI CACGTC 1 cut(s) 1254
BmrFI CCNGG 9 cut(s) 156, 342, 532, 1329, 2249, 2770, 3086, 3326, 3486
BoxI GACNNNNGTC 2 cut(s) 2418, 3350
BpiI GAAGAC 1 cut(s) 1502
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpmI CTGGAG 3 cut(s) 159, 1562, 3103
Bpu10I CCTNAGC 2 cut(s) 54, 816
BpuEI CTTGAG 6 cut(s) 1646, 1711, 2374, 2885, 2915, 3147
BpuMI CCSGG 1 cut(s) 3486
BsaAI YACGTR 1 cut(s) 359
BsaHI GRCGYC 3 cut(s) 349, 1026, 1950
BsaJI CCNNGG 8 cut(s) 154, 214, 2248, 2499, 2639, 2768, 3084, 3085
BsaWI WCCGGW 3 cut(s) 130, 2429, 3419
BsaXI ACNNNNNCTCC 2 cut(s) 2218, 2248
Bsc4I CCNNNNNNNGG 8 cut(s) 216, 381, 1003, 1328, 1355, 1979, 2150, 2254
BseBI CCWGG 8 cut(s) 156, 342, 532, 1329, 2249, 2770, 3086, 3326
BseDI CCNNGG 8 cut(s) 154, 214, 2248, 2499, 2639, 2768, 3084, 3085
BseGI GGATG 9 cut(s) 169, 350, 811, 1318, 1860, 2012, 2980, 3573, 3622
BseLI CCNNNNNNNGG 8 cut(s) 216, 381, 1003, 1328, 1355, 1979, 2150, 2254
BseMII CTCAG 8 cut(s) 45, 414, 947, 1895, 1941, 1953, 2220, 3266
BseRI GAGGAG 3 cut(s) 91, 1421, 2226
BseSI GKGCMC 4 cut(s) 183, 364, 374, 851
BseXI GCAGC 6 cut(s) 29, 174, 905, 2656, 3550, 3773
BseYI CCCAGC 1 cut(s) 774
BsgI GTGCAG 5 cut(s) 904, 927, 2504, 3066, 3624
Bsh1285I CGRYCG 1 cut(s) 3387
BshFI GGCC 9 cut(s) 8, 45, 372, 822, 1317, 2590, 3051, 3139, 3236
BshNI GGYRCC 2 cut(s) 2495, 3029
BsiEI CGRYCG 1 cut(s) 3387
BsiHKAI GWGCWC 4 cut(s) 99, 851, 1882, 2893
BsiHKCI CYCGRG 4 cut(s) 367, 654, 3126, 3788
BsiSI CCGG 5 cut(s) 131, 1820, 2430, 3420, 3485
BslFI GGGAC 4 cut(s) 336, 534, 2110, 3352
BslI CCNNNNNNNGG 8 cut(s) 216, 381, 1003, 1328, 1355, 1979, 2150, 2254
BsmAI GTCTC 3 cut(s) 1387, 1958, 2682
BsmFI GGGAC 4 cut(s) 336, 534, 2110, 3352
BsmI GAATGC 3 cut(s) 1066, 1639, 3193
BsnI GGCC 9 cut(s) 8, 45, 372, 822, 1317, 2590, 3051, 3139, 3236
BsoBI CYCGRG 4 cut(s) 367, 654, 3126, 3788
Bsp120I GGGCCC 1 cut(s) 370
Bsp1286I GDGCHC 9 cut(s) 99, 183, 364, 374, 851, 1621, 1882, 2873, 2893
Bsp19I CCATGG 2 cut(s) 214, 2499
BspACI CCGC 7 cut(s) 32, 1844, 2416, 2993, 3065, 3098, 3383
BspANI GGCC 9 cut(s) 8, 45, 372, 822, 1317, 2590, 3051, 3139, 3236
BspCNI CTCAG 8 cut(s) 46, 413, 946, 1894, 1940, 1954, 2221, 3265
BspMAI CTGCAG 1 cut(s) 2104
BspQI GCTCTTC 2 cut(s) 1626, 2878
BspT107I GGYRCC 2 cut(s) 2495, 3029
BspTI CTTAAG 3 cut(s) 743, 764, 1339
BssECI CCNNGG 8 cut(s) 154, 214, 2248, 2499, 2639, 2768, 3084, 3085
BssNI GRCGYC 3 cut(s) 349, 1026, 1950
BssT1I CCWWGG 3 cut(s) 214, 2499, 2639
Bst2UI CCWGG 8 cut(s) 156, 342, 532, 1329, 2249, 2770, 3086, 3326
Bst4CI ACNGT 9 cut(s) 166, 413, 1415, 1969, 2474, 2884, 3295, 3349, 3710
Bst6I CTCTTC 3 cut(s) 1626, 1980, 2878
BstACI GRCGYC 3 cut(s) 349, 1026, 1950
BstAFI CTTAAG 3 cut(s) 743, 764, 1339
BstAPI GCANNNNNTGC 1 cut(s) 254
BstBAI YACGTR 1 cut(s) 359
BstC8I GCNNGC 9 cut(s) 30, 250, 333, 528, 1030, 1165, 1678, 3049, 3673
BstDSI CCRYGG 2 cut(s) 214, 2499
BstEII GGTNACC 1 cut(s) 2327
BstF5I GGATG 9 cut(s) 169, 350, 811, 1318, 1860, 2012, 2980, 3573, 3622
BstHHI GCGC 2 cut(s) 17, 1612
BstMAI GTCTC 3 cut(s) 1387, 1958, 2682
BstMCI CGRYCG 1 cut(s) 3387
BstMWI GCNNNNNNNGC 9 cut(s) 14, 187, 233, 254, 1595, 1616, 1989, 3064, 3104
BstNI CCWGG 8 cut(s) 156, 342, 532, 1329, 2249, 2770, 3086, 3326
BstNSI RCATGY 5 cut(s) 801, 1145, 1422, 2602, 2983
BstPAI GACNNNNGTC 2 cut(s) 2418, 3350
BstPI GGTNACC 1 cut(s) 2327
BstSCI CCNGG 9 cut(s) 154, 340, 530, 1327, 2247, 2768, 3084, 3324, 3484
BstSFI CTRYAG 5 cut(s) 852, 1411, 2100, 2913, 2947
BstSLI GKGCMC 4 cut(s) 183, 364, 374, 851
BstV1I GCAGC 6 cut(s) 29, 174, 905, 2656, 3550, 3773
BstV2I GAAGAC 1 cut(s) 1502
BstX2I RGATCY 6 cut(s) 650, 1331, 1884, 3158, 3395, 3767
BstXI CCANNNNNNTGG 2 cut(s) 538, 1187
BstYI RGATCY 6 cut(s) 650, 1331, 1884, 3158, 3395, 3767
BsuRI GGCC 9 cut(s) 8, 45, 372, 822, 1317, 2590, 3051, 3139, 3236
BtgI CCRYGG 2 cut(s) 214, 2499
BtrI CACGTC 1 cut(s) 1254
BtsCI GGATG 9 cut(s) 169, 350, 811, 1318, 1860, 2012, 2980, 3573, 3622
BtsI GCAGTG 1 cut(s) 2109
Cac8I GCNNGC 9 cut(s) 30, 250, 333, 528, 1030, 1165, 1678, 3049, 3673
CaiI CAGNNNCTG 4 cut(s) 1328, 2039, 2099, 3197
CfoI GCGC 2 cut(s) 17, 1612
CseI GACGC 5 cut(s) 317, 338, 1034, 1507, 1958
CsiI ACCWGGT 1 cut(s) 3324
CspCI CAANNNNNGTGG 2 cut(s) 3562, 3597
EaeI YGGCCR 1 cut(s) 2588
Eam1104I CTCTTC 3 cut(s) 1626, 1980, 2878
EarI CTCTTC 3 cut(s) 1626, 1980, 2878
EciI GGCGGA 1 cut(s) 3054
Ecl136II GAGCTC 3 cut(s) 97, 1880, 2891
Eco130I CCWWGG 3 cut(s) 214, 2499, 2639
Eco24I GRGCYC 6 cut(s) 99, 374, 1621, 1882, 2873, 2893
Eco47I GGWCC 5 cut(s) 2386, 2413, 2567, 2926, 3339
Eco53kI GAGCTC 3 cut(s) 97, 1880, 2891
Eco57I CTGAAG 5 cut(s) 447, 779, 885, 2061, 3489
Eco72I CACGTG 1 cut(s) 359
Eco88I CYCGRG 4 cut(s) 367, 654, 3126, 3788
Eco91I GGTNACC 1 cut(s) 2327
EcoICRI GAGCTC 3 cut(s) 97, 1880, 2891
EcoO109I RGGNCCY 4 cut(s) 44, 371, 820, 2926
EcoO65I GGTNACC 1 cut(s) 2327
EcoRI GAATTC 1 cut(s) 3208
EcoRII CCWGG 8 cut(s) 154, 340, 530, 1327, 2247, 2768, 3084, 3324
EcoT14I CCWWGG 3 cut(s) 214, 2499, 2639
EcoT22I ATGCAT 1 cut(s) 876
EcoT38I GRGCYC 6 cut(s) 99, 374, 1621, 1882, 2873, 2893
ErhI CCWWGG 3 cut(s) 214, 2499, 2639
FaqI GGGAC 4 cut(s) 336, 534, 2110, 3352
FauI CCCGC 1 cut(s) 3091
FbaI TGATCA 1 cut(s) 1039
FblI GTMKAC 1 cut(s) 2505
Fnu4HI GCNGC 7 cut(s) 18, 33, 188, 919, 2645, 3539, 3762
FokI GGATG 9 cut(s) 156, 357, 818, 1305, 1847, 1999, 2987, 3580, 3609
FriOI GRGCYC 6 cut(s) 99, 374, 1621, 1882, 2873, 2893
Fsp4HI GCNGC 7 cut(s) 18, 33, 188, 919, 2645, 3539, 3762
FspBI CTAG 4 cut(s) 1529, 1638, 1841, 3059
GlaI GCGC 2 cut(s) 16, 1611
GluI GCNGC 7 cut(s) 18, 33, 188, 919, 2645, 3539, 3762
GsaI CCCAGC 1 cut(s) 778
GsuI CTGGAG 3 cut(s) 159, 1562, 3103
HaeIII GGCC 9 cut(s) 8, 45, 372, 822, 1317, 2590, 3051, 3139, 3236
HapII CCGG 5 cut(s) 131, 1820, 2430, 3420, 3485
HgaI GACGC 5 cut(s) 317, 338, 1034, 1507, 1958
HhaI GCGC 2 cut(s) 17, 1612
Hin1I GRCGYC 3 cut(s) 349, 1026, 1950
Hin6I GCGC 2 cut(s) 15, 1610
HinP1I GCGC 2 cut(s) 15, 1610
HincII GTYRAC 3 cut(s) 1873, 2423, 3439
HindII GTYRAC 3 cut(s) 1873, 2423, 3439
HindIII AAGCTT 6 cut(s) 394, 761, 1596, 2796, 3239, 3301
HpaI GTTAAC 2 cut(s) 1873, 3439
HpaII CCGG 5 cut(s) 131, 1820, 2430, 3420, 3485
HphI GGTGA 6 cut(s) 1391, 2216, 2339, 2539, 3073, 3323
Hpy99I CGWCG 3 cut(s) 14, 110, 3651
HpyCH4III ACNGT 9 cut(s) 166, 413, 1415, 1969, 2474, 2884, 3295, 3349, 3710
HpyCH4IV ACGT 4 cut(s) 148, 358, 1253, 3734
HpyF10VI GCNNNNNNNGC 9 cut(s) 14, 187, 233, 254, 1595, 1616, 1989, 3064, 3104
HpySE526I ACGT 4 cut(s) 148, 358, 1253, 3734
Hsp92I GRCGYC 3 cut(s) 349, 1026, 1950
HspAI GCGC 2 cut(s) 15, 1610
KpnI GGTACC 2 cut(s) 2499, 3033
Ksp22I TGATCA 1 cut(s) 1039
KspAI GTTAAC 2 cut(s) 1873, 3439
LguI GCTCTTC 2 cut(s) 1626, 2878
LmnI GCTCC 4 cut(s) 836, 1822, 2239, 2558
Lsp1109I GCAGC 6 cut(s) 29, 174, 905, 2656, 3550, 3773
MabI ACCWGGT 1 cut(s) 3324
MaeI CTAG 4 cut(s) 1529, 1638, 1841, 3059
MaeII ACGT 4 cut(s) 148, 358, 1253, 3734
MaeIII GTNAC 5 cut(s) 793, 1216, 1385, 2327, 3311
MfeI CAATTG 1 cut(s) 3178
MflI RGATCY 6 cut(s) 650, 1331, 1884, 3158, 3395, 3767
MhlI GDGCHC 9 cut(s) 99, 183, 364, 374, 851, 1621, 1882, 2873, 2893
MlsI TGGCCA 1 cut(s) 2590
MluNI TGGCCA 1 cut(s) 2590
MlyI GAGTC 2 cut(s) 472, 1085
MmeI TCCRAC 4 cut(s) 129, 1373, 1737, 2930
Mox20I TGGCCA 1 cut(s) 2590
Mph1103I ATGCAT 1 cut(s) 876
MroXI GAANNNNTTC 1 cut(s) 3077
MscI TGGCCA 1 cut(s) 2590
MslI CAYNNNNRTG 4 cut(s) 343, 831, 1908, 3648
Msp20I TGGCCA 1 cut(s) 2590
MspA1I CMGCKG 3 cut(s) 918, 3256, 3764
MspCI CTTAAG 3 cut(s) 743, 764, 1339
MspI CCGG 5 cut(s) 131, 1820, 2430, 3420, 3485
MspR9I CCNGG 9 cut(s) 156, 342, 532, 1329, 2249, 2770, 3086, 3326, 3486
MunI CAATTG 1 cut(s) 3178
Mva1269I GAATGC 3 cut(s) 1066, 1639, 3193
MvaI CCWGG 8 cut(s) 156, 342, 532, 1329, 2249, 2770, 3086, 3326
MwoI GCNNNNNNNGC 9 cut(s) 14, 187, 233, 254, 1595, 1616, 1989, 3064, 3104
NciI CCSGG 1 cut(s) 3486
NcoI CCATGG 2 cut(s) 214, 2499
NmuCI GTSAC 3 cut(s) 1385, 2327, 3311
NsiI ATGCAT 1 cut(s) 876
NspI RCATGY 5 cut(s) 801, 1145, 1422, 2602, 2983
PaeR7I CTCGAG 3 cut(s) 654, 3126, 3788
PasI CCCWGGG 1 cut(s) 3085
PciI ACATGT 2 cut(s) 1418, 2979
PciSI GCTCTTC 2 cut(s) 1626, 2878
PcsI WCGNNNNNNNCGW 1 cut(s) 1448
PctI GAATGC 3 cut(s) 1066, 1639, 3193
PdmI GAANNNNTTC 1 cut(s) 3077
PflFI GACNNNGTC 1 cut(s) 1501
PflMI CCANNNNNTGG 2 cut(s) 1328, 2150
PkrI GCNGC 7 cut(s) 19, 34, 189, 920, 2646, 3540, 3763
PleI GAGTC 2 cut(s) 472, 1084
PmaCI CACGTG 1 cut(s) 359
PmlI CACGTG 1 cut(s) 359
PpsI GAGTC 2 cut(s) 472, 1084
Ppu21I YACGTR 1 cut(s) 359
PpuMI RGGWCCY 1 cut(s) 2926
PscI ACATGT 2 cut(s) 1418, 2979
PshAI GACNNNNGTC 2 cut(s) 2418, 3350
PshBI ATTAAT 1 cut(s) 612
Psp124BI GAGCTC 3 cut(s) 99, 1882, 2893
Psp1406I AACGTT 1 cut(s) 3734
Psp5II RGGWCCY 1 cut(s) 2926
Psp6I CCWGG 8 cut(s) 154, 340, 530, 1327, 2247, 2768, 3084, 3324
PspCI CACGTG 1 cut(s) 359
PspEI GGTNACC 1 cut(s) 2327
PspFI CCCAGC 1 cut(s) 774
PspGI CCWGG 8 cut(s) 154, 340, 530, 1327, 2247, 2768, 3084, 3324
PspOMI GGGCCC 1 cut(s) 370
PspPPI RGGWCCY 1 cut(s) 2926
PspXI VCTCGAGB 1 cut(s) 3788
PsrI GAACNNNNNNTAC 2 cut(s) 2425, 2457
PstI CTGCAG 1 cut(s) 2104
PstNI CAGNNNCTG 4 cut(s) 1328, 2039, 2099, 3197
PsuI RGATCY 6 cut(s) 650, 1331, 1884, 3158, 3395, 3767
PsyI GACNNNGTC 1 cut(s) 1501
PvuII CAGCTG 3 cut(s) 918, 3256, 3764
RseI CAYNNNNRTG 4 cut(s) 343, 831, 1908, 3648
SacI GAGCTC 3 cut(s) 99, 1882, 2893
SapI GCTCTTC 2 cut(s) 1626, 2878
SatI GCNGC 7 cut(s) 18, 33, 188, 919, 2645, 3539, 3762
SchI GAGTC 2 cut(s) 472, 1085
ScrFI CCNGG 9 cut(s) 156, 342, 532, 1329, 2249, 2770, 3086, 3326, 3486
SduI GDGCHC 9 cut(s) 99, 183, 364, 374, 851, 1621, 1882, 2873, 2893
SexAI ACCWGGT 1 cut(s) 3324
SfcI CTRYAG 5 cut(s) 852, 1411, 2100, 2913, 2947
Sfr274I CTCGAG 3 cut(s) 654, 3126, 3788
SinI GGWCC 5 cut(s) 2386, 2413, 2567, 2926, 3339
SlaI CTCGAG 3 cut(s) 654, 3126, 3788
SmiMI CAYNNNNRTG 4 cut(s) 343, 831, 1908, 3648
SsiI CCGC 7 cut(s) 32, 1844, 2416, 2993, 3065, 3098, 3383
SspI AATATT 1 cut(s) 2449
SspMI CTAG 4 cut(s) 1529, 1638, 1841, 3059
SstI GAGCTC 3 cut(s) 99, 1882, 2893
StyD4I CCNGG 9 cut(s) 154, 340, 530, 1327, 2247, 2768, 3084, 3324, 3484
StyI CCWWGG 3 cut(s) 214, 2499, 2639
TaaI ACNGT 9 cut(s) 166, 413, 1415, 1969, 2474, 2884, 3295, 3349, 3710
TaiI ACGT 4 cut(s) 151, 361, 1256, 3737
TaqI TCGA 9 cut(s) 93, 481, 655, 1451, 2265, 3127, 3358, 3387, 3789
TatI WGTACW 5 cut(s) 686, 1415, 1955, 2879, 3037
TauI GCSGC 1 cut(s) 35
TseFI GTSAC 3 cut(s) 1385, 2327, 3311
TseI GCWGC 6 cut(s) 17, 187, 918, 2644, 3538, 3761
Tsp45I GTSAC 3 cut(s) 1385, 2327, 3311
TspGWI ACGGA 3 cut(s) 1676, 2925, 3388
Tth111I GACNNNGTC 1 cut(s) 1501
Van91I CCANNNNNTGG 2 cut(s) 1328, 2150
Vha464I CTTAAG 3 cut(s) 743, 764, 1339
VneI GTGCAC 1 cut(s) 847
VpaK11BI GGWCC 5 cut(s) 2386, 2413, 2567, 2926, 3339
VspI ATTAAT 1 cut(s) 612
XapI RAATTY 5 cut(s) 664, 1789, 3077, 3172, 3208
XceI RCATGY 5 cut(s) 801, 1145, 1422, 2602, 2983
XcmI CCANNNNNNNNNTGG 2 cut(s) 1325, 1907
XhoI CTCGAG 3 cut(s) 654, 3126, 3788
XmiI GTMKAC 1 cut(s) 2505
XmnI GAANNNNTTC 1 cut(s) 3077
XspI CTAG 4 cut(s) 1529, 1638, 1841, 3059
Zsp2I ATGCAT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.