Rh1AG336100

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005246
Physical Location & Seq
Reverse (-)
57017407 .. 57022462
5056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG336100.1

Sequence Viewer

Length: 3351 bp
ATGGAGAAGGAGGCACTCTTGGTTGGGACCAGTAAAGGCCTTCTGCTGCTGCATAGTGTGGATGACAATGCCTCGCAAGTCGTCGGCGGAGTCGACGGCGGTGTGAGGTGTGTTTCGGCTAGTCCGGATGGAGATGTTCTGGCTATAATTACTGGGACTGGGCAGATACTGGTGATGACTCTGGATTGGGACTTGCTTTACGAGACTGCACTTGAGGATGTTGCTGAAGATGGCAGCCGCATATGTGATCTAACATTGTCGAATATTGAAAGCCCCATTGCTTGGCGCGGTGATGGGAAATACTTTGTCACACTAAGCGAGGCGTTGGATTCTACCTCTATGCTTAAGAGGCTTAAGGTTTGGGAGCGACATTCAGGGGCGTTACATGCTGTTTCAGAATCAAAGTCGTTCATGGGTTCAGTGGTGGACTGGATGCCAAGTGGGGCGAAAGTTGCGGCTGTTTATGATAGGAAAGCGCAAAATGAGTGTCCTTCAATAGTGTTTTACGAGAGGAATGGGTTAGAAAGAAGCCTGTTTAGCATTAATGAGCAAGCTAATGCAACTGTAGAATTTCTCAAGTGGAATTGCAGTTCAGATCTTCTTGCCGCCGTTGTCAGATGTGATAACTATGACTGTGTCAAGATTTGGTATTTCAGTAACAATCACTGGTACTTAAAATCTGAAATTAGATACCCAAGACACGACGGAGTGAGGTTTGTCTGGAATCCAACAAGGCCACTGCAGTTAATATGTTGGACTCTTGGCGGCCAGATTACATCTTACAACTTCATATGGAATTCAGCCGTGATGGAGGACTCAACTGCATTGGTAATTGATGACTCCAAGATACTTGTAACCCCCCTTTCTTTATACTTAATGCCACCTCCTATGTATTTATTCAGCCTTAAATTCTCGAGTGTTGTCCGGGACTTTGCCTTCTACTCCAAGAATTCTAAGAACTGCTTGGCTGCTTTTCTATCAGATGGCTGTTTATGTATTGTAGAGCTTCCCGCAACTGATACATGGGAAGATCTAGAAGGAAAAGAGTTACTTGTTGAAGCGTCCAGTTCTGATTCACCATTTGGTTCAGTTTTGCATCTAATATGGTTGGATCCCCATAAGATTCTTGCTGTTTCTCACCATGGGTTCAGTCATAGTAATTACTTGCCTCAGACTTCACTTGGTGAGGAAGACCTTGGTTTTTATTTGCAGGAAATTGAGCTTACATGCTCTGAGGATCATGTCCCAGGTTTATTGACATGCTCAGGTTGGAATGCTAAAGTCTCCAGTCGGAACTCTCTAGAAGAGACCATTATTGGAATTACTCCTAATCCTGCTTCAAAAGGTTCAGCATTTGTTCAATTTGATGGTGGAAAGGTTTATGAGTATGATCCAAAGTTAGGCATCTCCCGAGGGGCTTCAAAGCTTGATTGGAGCTTCTCATCAACTTGCCCTTGGATGAGTGCGGTTCTAGTTGGAGACAGTGTGTCATCGAAACCTCTGCTTTTCGGACTTGATGACAGTTGTAGGCTGCACGTCAGTGGAAAGATAATATGCAACAACTGCAGCAGTTTTTCATTCTACTCAAATTTGGCTGATCAGGTGATCACACATTTAATTTTGGCAACTAAGCAGGATTTGCTTTTTGTTGTTGAAATATCAGATGTATTGCAAAAAGAACTTGAGATAAAACATGAGAACTTCATCCATGCTGGTAAGAAGAAAAGAGTAGAAAATAGAAACTTTATAAACATATGGGAAAGAGGTGCCAAAGTTGTTGGTGTCGTTCATGGAGATGAAGCCGCTGTCCTGTTGCAACCATCTCGTGGCAATCTAGAATGCATTTACCCAAGAAAGTTGGTCCTGGCCTCTATTTGCAATGCATTGGTCCAAAGGCGTTTTAGAGATGCACTTCTCATGGTGAGGCGTCAGAGGATAGATTTCAATGTCTTGGTTGACTATTGTGGTTGGCAGGTGTTTCTTCAATCAGCGGCAGAATTTGTCAAGCAGGTCAATAATTTGAACCACATGACTGAGTTTGTTTGTGCCATAAAGAATGAAGATACTACAGAGACGCTATATAAGGAATTTATTTCTTCACCCTCTCCTAAAGAAGCTAAAGATGTGCAATCGCATGACTCCAAGGGTTTTGATTCCAATAACAAGGTATCTTCTGTGCTGCTGGCCATTAGGAAGGCTCTTGAGGATCAATTACCGGAAACTCCTGCAAGGGAGCTTTGCATTCTGACCACTCTTGCTCGTAGTGACCCCCCTGCACTTGATGAGGCTTTAGAGAGAATAAAAGTTATCCGTGAGGCAGAATTGTCAGGTTCCAATGACCAAAGGAGAATGTCTTACCCCACTGCTGAAGAGGCTTTGAAGCATCTCCTATGGTTATCTGATTCGGAATCTGTTTATGAGGCAGCTTTGGGCCTTTATGATTTGAACCTTGCAGCTATGGTGGCATTGAATTCTCAGCAGGACCCTAAAGAATTCCTTCCTTTTCTTCAAGAATTGGAAAGTATGCCTGATACTTTAATGCGCTATAACATTGACCTTCGGCTGCAGAGGTTTGAGAAGGCCCTCAAGCACATTGTTTCTGCAGGAGACACTTGCTATGCAGATTCTATGAACCTGATGAAGAAAAATCCTCAACTCTTTCCACTGGGACTTCAGCTGATAGCTGATCCTAACAAGAAGAGGCAAGTTCTCGACGCTTGGGGAGATCATCTTAGCAATGAAAAATGCTTTGAGGATGCTGCTACCACTTATTTGTGCTGCTCCAGTTTTGAGAAGGCTTTGAAGTCGTACCGTTCTTGTGGTAATTGGGGTAAGGTGCTTACAGTTGCCGGGCTTCTAAAACTGGGTAAAGATGAGATAATGCAACTGGCTCATGAGCTATGTGAAGAATTGCAAGCTCTTGGTAAACCAAAGGAAGCTGCCAAAATTGCACTGGAGTATTGTGGTGAAATTAACAATGGGATGAGTTTGTTGATTAGCGCAAGGGACTGGGAGGAAGCTTTAAGAGTTGCTTTAATGCACAGTAGACAGGATTTGATCTCTGAGGTGAAGAATGCAGCTTTGGAATGTGCAGTCTTGCTGATTGGTGAATACGAGGAAGGTTTGGAGAAAGTAGGGAAGTACTTGGCTCGCTACTTAGCTTTAAGGCAAAGAAGGTTACTCCTTGCTGCAAAAGTCCAGTCAGAGGAACGGTCAATGAACGATCTTGATGATGATACTGCTTCAGAAGCTAGCAGTAATTTCAGTGGAATGAGTGCTTACACCACTGGGTATGTCTTTTACATACTTTTATTCATACAGGTCTACCTCTTTAATTCATTGGGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IKI3

Protein Analysis

1116

Amino Acids

124.64

Weight (kDa)

5.18

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_ELP1_1st PF04762 2 - 73 3.1e-13 ELP1 first N-terminal beta-propeller
Beta-prop_ELP1_1st PF04762 90 - 243 8.3e-45 ELP1 first N-terminal beta-propeller
Beta-prop_ELP1_2nd PF23797 277 - 593 5.5e-49 ELP1 N-terminal second beta-propeller
A-sol_ELP1 PF23925 618 - 839 6e-48 ELP1 alpha-solenoid
TPR_ELP1 PF23878 848 - 1009 1.1e-25 ELP1 TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1748
AarI CACCTGC 1 cut(s) 1963
Acc36I ACCTGC 2 cut(s) 1963, 1999
AccB1I GGYRCC 1 cut(s) 1766
AccB7I CCANNNNNTGG 2 cut(s) 282, 1826
AccI GTMKAC 3 cut(s) 93, 3046, 3324
AccII CGCG 1 cut(s) 288
AccIII TCCGGA 1 cut(s) 124
AclWI GGATC 6 cut(s) 1106, 1119, 1245, 1385, 2214, 2681
AcoI YGGCCR 2 cut(s) 766, 2184
AcsI RAATTY 9 cut(s) 569, 796, 908, 949, 1588, 1997, 2087, 2470, 2492
AcuI CTGAAG 4 cut(s) 246, 2388, 2657, 3228
AcyI GRCGYC 1 cut(s) 1927
AdeI CACNNNGTG 1 cut(s) 1184
AfaI GTAC 3 cut(s) 671, 2810, 3143
AfiI CCNNNNNNNGG 4 cut(s) 282, 1400, 1826, 3205
AflII CTTAAG 2 cut(s) 344, 353
AhdI GACNNNNNGTC 1 cut(s) 1486
AjiI CACGTC 1 cut(s) 1537
AjnI CCWGG 2 cut(s) 1246, 1863
AjuI GAANNNNNNNTTGG 2 cut(s) 3065, 3097
AleI CACNNNNGTG 1 cut(s) 1539
AloI GAACNNNNNNTCC 2 cut(s) 574, 606
Alw26I GTCTC 6 cut(s) 197, 1288, 1301, 1473, 2066, 2601
AlwI GGATC 6 cut(s) 1106, 1119, 1245, 1385, 2214, 2681
AlwNI CAGNNNCTG 1 cut(s) 169
Ama87I CYCGRG 2 cut(s) 913, 1410
Aor13HI TCCGGA 1 cut(s) 124
AoxI GGCC 7 cut(s) 37, 734, 766, 1866, 2184, 2431, 2580
ApoI RAATTY 9 cut(s) 569, 796, 908, 949, 1588, 1997, 2087, 2470, 2492
ArsI GACNNNNNNTTYG 4 cut(s) 472, 504, 3185, 3217
AseI ATTAAT 1 cut(s) 543
Asp700I GAANNNNTTC 1 cut(s) 2496
AspLEI GCGC 4 cut(s) 288, 478, 2544, 3002
AspS9I GGNCC 6 cut(s) 27, 1861, 1888, 2431, 2482, 2581
AsuC2I CCSGG 2 cut(s) 926, 2851
AsuNHI GCTAGC 1 cut(s) 3251
AvaI CYCGRG 2 cut(s) 913, 1410
AvaII GGWCC 4 cut(s) 27, 1861, 1888, 2482
BalI TGGCCA 1 cut(s) 2186
BamHI GGATCC 1 cut(s) 1111
BanI GGYRCC 1 cut(s) 1766
BauI CACGAG 1 cut(s) 1824
BbsI GAAGAC 1 cut(s) 1197
BccI CCATC 7 cut(s) 122, 224, 287, 802, 977, 1361, 1828
BceAI ACGGC 3 cut(s) 112, 593, 788
BcgI CGANNNNNNTGC 4 cut(s) 1483, 1517, 1805, 1839
BciT130I CCWGG 2 cut(s) 1248, 1865
BclI TGATCA 2 cut(s) 1597, 1605
BcnI CCSGG 2 cut(s) 926, 2851
BcoDI GTCTC 6 cut(s) 197, 1288, 1301, 1473, 2066, 2601
BfaI CTAG 6 cut(s) 120, 1034, 1301, 1472, 1835, 3252
BfmI CTRYAG 6 cut(s) 564, 740, 1564, 2067, 2564, 2601
BfrI CTTAAG 2 cut(s) 344, 353
BfuAI ACCTGC 2 cut(s) 1963, 1999
BglII AGATCT 2 cut(s) 595, 1030
BmcAI AGTACT 1 cut(s) 3143
Bme1390I CCNGG 4 cut(s) 926, 1248, 1865, 2851
Bme18I GGWCC 4 cut(s) 27, 1861, 1888, 2482
BmeRI GACNNNNNGTC 1 cut(s) 1486
BmeT110I CYCGRG 2 cut(s) 913, 1410
BmgBI CACGTC 1 cut(s) 1537
BmgT120I GGNCC 6 cut(s) 27, 1861, 1888, 2431, 2482, 2581
BmiI GGNNCC 5 cut(s) 28, 1113, 1768, 2332, 2484
BmrFI CCNGG 4 cut(s) 926, 1248, 1865, 2851
BmrI ACTGGG 6 cut(s) 162, 168, 2675, 2873, 3019, 3297
BmsI GCATC 6 cut(s) 423, 1105, 1413, 1897, 2392, 2746
BmtI GCTAGC 1 cut(s) 3255
BmuI ACTGGG 6 cut(s) 162, 168, 2675, 2873, 3019, 3297
BpiI GAAGAC 1 cut(s) 1197
BpmI CTGGAG 3 cut(s) 1270, 2767, 2975
Bpu10I CCTNAGC 1 cut(s) 1264
BpuEI CTTGAG 5 cut(s) 233, 560, 1703, 2222, 2570
BpuMI CCSGG 2 cut(s) 926, 2851
BsaHI GRCGYC 1 cut(s) 1927
BsaI GGTCTC 1 cut(s) 1301
BsaJI CCNNGG 6 cut(s) 1141, 1195, 1246, 1411, 1454, 2142
BsaWI WCCGGW 2 cut(s) 124, 2215
BsaXI ACNNNNNCTCC 2 cut(s) 1470, 1500
Bsc4I CCNNNNNNNGG 4 cut(s) 282, 1400, 1826, 3205
Bse3DI GCAATG 3 cut(s) 276, 1885, 2743
BseAI TCCGGA 1 cut(s) 124
BseBI CCWGG 2 cut(s) 1248, 1865
BseDI CCNNGG 6 cut(s) 1141, 1195, 1246, 1411, 1454, 2142
BseGI GGATG 8 cut(s) 67, 133, 223, 438, 1464, 1704, 2761, 2988
BseLI CCNNNNNNNGG 4 cut(s) 282, 1400, 1826, 3205
BseMI GCAATG 3 cut(s) 276, 1885, 2743
BseMII CTCAG 6 cut(s) 1184, 1224, 1278, 2025, 2489, 3054
BsgI GTGCAG 4 cut(s) 192, 1517, 2259, 3111
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 7 cut(s) 39, 736, 768, 1868, 2186, 2433, 2582
BshNI GGYRCC 1 cut(s) 1766
BsiHKCI CYCGRG 2 cut(s) 913, 1410
BsiSI CCGG 4 cut(s) 125, 925, 2216, 2850
BslFI GGGAC 7 cut(s) 40, 169, 203, 941, 1229, 2682, 3020
BslI CCNNNNNNNGG 4 cut(s) 282, 1400, 1826, 3205
BsmAI GTCTC 6 cut(s) 197, 1288, 1301, 1473, 2066, 2601
BsmBI CGTCTC 1 cut(s) 2066
BsmFI GGGAC 7 cut(s) 40, 169, 203, 941, 1229, 2682, 3020
BsmI GAATGC 4 cut(s) 1279, 1844, 2241, 3079
BsnI GGCC 7 cut(s) 39, 736, 768, 1868, 2186, 2433, 2582
Bso31I GGTCTC 1 cut(s) 1301
BsoBI CYCGRG 2 cut(s) 913, 1410
Bsp13I TCCGGA 1 cut(s) 124
Bsp19I CCATGG 1 cut(s) 1141
BspANI GGCC 7 cut(s) 39, 736, 768, 1868, 2186, 2433, 2582
BspCNI CTCAG 6 cut(s) 1183, 1225, 1277, 2026, 2488, 3055
BspEI TCCGGA 1 cut(s) 124
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 2893
BspLI GGNNCC 5 cut(s) 28, 1113, 1768, 2332, 2484
BspMAI CTGCAG 4 cut(s) 744, 1568, 2568, 2605
BspMI ACCTGC 2 cut(s) 1963, 1999
BspOI GCTAGC 1 cut(s) 3255
BspPI GGATC 6 cut(s) 1106, 1119, 1245, 1385, 2214, 2681
BspT107I GGYRCC 1 cut(s) 1766
BspTI CTTAAG 2 cut(s) 344, 353
BspTNI GGTCTC 1 cut(s) 1301
BsrDI GCAATG 3 cut(s) 276, 1885, 2743
BssECI CCNNGG 6 cut(s) 1141, 1195, 1246, 1411, 1454, 2142
BssNI GRCGYC 1 cut(s) 1927
BssSI CACGAG 1 cut(s) 1824
BssT1I CCWWGG 4 cut(s) 1141, 1195, 1454, 2142
Bst2BI CACGAG 1 cut(s) 1824
Bst2UI CCWGG 2 cut(s) 1248, 1865
Bst4CI ACNGT 8 cut(s) 565, 635, 1484, 1523, 2813, 2845, 3044, 3213
Bst6I CTCTTC 3 cut(s) 1299, 2364, 2693
BstACI GRCGYC 1 cut(s) 1927
BstAFI CTTAAG 2 cut(s) 344, 353
BstAPI GCANNNNNTGC 2 cut(s) 1563, 1639
BstC8I GCNNGC 5 cut(s) 552, 2184, 2916, 3151, 3253
BstDSI CCRYGG 1 cut(s) 1141
BstF5I GGATG 8 cut(s) 67, 133, 223, 438, 1464, 1704, 2761, 2988
BstFNI CGCG 1 cut(s) 288
BstHHI GCGC 4 cut(s) 288, 478, 2544, 3002
BstMAI GTCTC 6 cut(s) 197, 1288, 1301, 1473, 2066, 2601
BstNI CCWGG 2 cut(s) 1248, 1865
BstNSI RCATGY 3 cut(s) 389, 1230, 1263
BstSCI CCNGG 4 cut(s) 924, 1246, 1863, 2849
BstSFI CTRYAG 6 cut(s) 564, 740, 1564, 2067, 2564, 2601
BstUI CGCG 1 cut(s) 288
BstV2I GAAGAC 1 cut(s) 1197
BstX2I RGATCY 3 cut(s) 595, 1030, 1111
BstYI RGATCY 3 cut(s) 595, 1030, 1111
BsuRI GGCC 7 cut(s) 39, 736, 768, 1868, 2186, 2433, 2582
BtgI CCRYGG 1 cut(s) 1141
BtrI CACGTC 1 cut(s) 1537
BtsCI GGATG 8 cut(s) 67, 133, 223, 438, 1464, 1704, 2761, 2988
BtsI GCAGTG 2 cut(s) 737, 2361
BveI ACCTGC 2 cut(s) 1963, 1999
Cac8I GCNNGC 5 cut(s) 552, 2184, 2916, 3151, 3253
CaiI CAGNNNCTG 1 cut(s) 169
CciI TCATGA 1 cut(s) 2893
CfoI GCGC 4 cut(s) 288, 478, 2544, 3002
Cfr13I GGNCC 6 cut(s) 27, 1861, 1888, 2431, 2482, 2581
CseI GACGC 4 cut(s) 1050, 1916, 2083, 2723
Csp6I GTAC 3 cut(s) 670, 2809, 3142
CviQI GTAC 3 cut(s) 670, 2809, 3142
DraIII CACNNNGTG 1 cut(s) 1184
DriI GACNNNNNGTC 1 cut(s) 1486
EaeI YGGCCR 2 cut(s) 766, 2184
Eam1104I CTCTTC 3 cut(s) 1299, 2364, 2693
Eam1105I GACNNNNNGTC 1 cut(s) 1486
EarI CTCTTC 3 cut(s) 1299, 2364, 2693
EciI GGCGGA 1 cut(s) 102
Eco130I CCWWGG 4 cut(s) 1141, 1195, 1454, 2142
Eco147I AGGCCT 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 1301
Eco47I GGWCC 4 cut(s) 27, 1861, 1888, 2482
Eco57I CTGAAG 4 cut(s) 246, 2388, 2657, 3228
Eco88I CYCGRG 2 cut(s) 913, 1410
EcoO109I RGGNCCY 2 cut(s) 2482, 2581
EcoRI GAATTC 4 cut(s) 796, 949, 2470, 2492
EcoRII CCWGG 2 cut(s) 1246, 1863
EcoT14I CCWWGG 4 cut(s) 1141, 1195, 1454, 2142
EcoT22I ATGCAT 2 cut(s) 1844, 1885
ErhI CCWWGG 4 cut(s) 1141, 1195, 1454, 2142
Esp3I CGTCTC 1 cut(s) 2066
FalI AAGNNNNNCTT 8 cut(s) 947, 979, 1035, 1067, 2481, 2513, 3016, 3048
FaqI GGGAC 7 cut(s) 40, 169, 203, 941, 1229, 2682, 3020
FauI CCCGC 1 cut(s) 1018
FauNDI CATATG 3 cut(s) 242, 791, 1754
FbaI TGATCA 2 cut(s) 1597, 1605
FblI GTMKAC 3 cut(s) 93, 3046, 3324
FokI GGATG 8 cut(s) 74, 140, 230, 445, 1471, 1691, 2768, 2995
FspBI CTAG 6 cut(s) 120, 1034, 1301, 1472, 1835, 3252
GlaI GCGC 4 cut(s) 287, 477, 2543, 3001
GsuI CTGGAG 3 cut(s) 1270, 2767, 2975
HaeIII GGCC 7 cut(s) 39, 736, 768, 1868, 2186, 2433, 2582
HapII CCGG 4 cut(s) 125, 925, 2216, 2850
HgaI GACGC 4 cut(s) 1050, 1916, 2083, 2723
HhaI GCGC 4 cut(s) 288, 478, 2544, 3002
Hin1I GRCGYC 1 cut(s) 1927
Hin6I GCGC 4 cut(s) 286, 476, 2542, 3000
HinP1I GCGC 4 cut(s) 286, 476, 2542, 3000
HincII GTYRAC 2 cut(s) 94, 1957
HindII GTYRAC 2 cut(s) 94, 1957
HindIII AAGCTT 2 cut(s) 1424, 3018
HpaII CCGG 4 cut(s) 125, 925, 2216, 2850
Hpy166II GTNNAC 6 cut(s) 94, 427, 1957, 2927, 3047, 3325
Hpy8I GTNNAC 6 cut(s) 94, 427, 1957, 2927, 3047, 3325
Hpy99I CGWCG 4 cut(s) 86, 98, 707, 2717
HpyCH4III ACNGT 8 cut(s) 565, 635, 1484, 1523, 2813, 2845, 3044, 3213
HpyCH4IV ACGT 1 cut(s) 1536
HpySE526I ACGT 1 cut(s) 1536
Hsp92I GRCGYC 1 cut(s) 1927
HspAI GCGC 4 cut(s) 286, 476, 2542, 3000
Kpn2I TCCGGA 1 cut(s) 124
Ksp22I TGATCA 2 cut(s) 1597, 1605
LmnI GCTCC 4 cut(s) 364, 1434, 2233, 2786
LweI GCATC 6 cut(s) 423, 1105, 1413, 1897, 2392, 2746
MaeI CTAG 6 cut(s) 120, 1034, 1301, 1472, 1835, 3252
MaeII ACGT 1 cut(s) 1536
MaeIII GTNAC 7 cut(s) 307, 381, 656, 853, 1047, 2264, 3177
MflI RGATCY 3 cut(s) 595, 1030, 1111
MlsI TGGCCA 1 cut(s) 2186
MluNI TGGCCA 1 cut(s) 2186
MlyI GAGTC 6 cut(s) 99, 172, 751, 809, 833, 2132
MmeI TCCRAC 7 cut(s) 306, 734, 752, 1089, 1250, 1271, 1456
Mox20I TGGCCA 1 cut(s) 2186
Mph1103I ATGCAT 2 cut(s) 1844, 1885
MroI TCCGGA 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 2496
MscI TGGCCA 1 cut(s) 2186
MslI CAYNNNNRTG 2 cut(s) 1539, 1794
Msp20I TGGCCA 1 cut(s) 2186
MspA1I CMGCKG 3 cut(s) 1805, 1991, 2677
MspCI CTTAAG 2 cut(s) 344, 353
MspI CCGG 4 cut(s) 125, 925, 2216, 2850
MspR9I CCNGG 4 cut(s) 926, 1248, 1865, 2851
Mva1269I GAATGC 4 cut(s) 1279, 1844, 2241, 3079
MvaI CCWGG 2 cut(s) 1248, 1865
MvnI CGCG 1 cut(s) 288
NciI CCSGG 2 cut(s) 926, 2851
NcoI CCATGG 1 cut(s) 1141
NdeI CATATG 3 cut(s) 242, 791, 1754
NheI GCTAGC 1 cut(s) 3251
NlaIV GGNNCC 5 cut(s) 28, 1113, 1768, 2332, 2484
NmuCI GTSAC 2 cut(s) 307, 2264
NsiI ATGCAT 2 cut(s) 1844, 1885
NspI RCATGY 3 cut(s) 389, 1230, 1263
OliI CACNNNNGTG 1 cut(s) 1539
PaeR7I CTCGAG 1 cut(s) 913
PagI TCATGA 1 cut(s) 2893
PaqCI CACCTGC 1 cut(s) 1963
PceI AGGCCT 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 4 cut(s) 1279, 1844, 2241, 3079
PdmI GAANNNNTTC 1 cut(s) 2496
PfeI GAWTC 9 cut(s) 329, 398, 724, 1073, 1123, 2153, 2402, 2408, 2624
PflFI GACNNNGTC 1 cut(s) 635
PflMI CCANNNNNTGG 2 cut(s) 282, 1826
PfoI TCCNGGA 1 cut(s) 924
PleI GAGTC 6 cut(s) 98, 172, 751, 809, 833, 2132
PpsI GAGTC 6 cut(s) 98, 172, 751, 809, 833, 2132
PpuMI RGGWCCY 1 cut(s) 2482
PshBI ATTAAT 1 cut(s) 543
PsiI TTATAA 1 cut(s) 1748
Psp5II RGGWCCY 1 cut(s) 2482
Psp6I CCWGG 2 cut(s) 1246, 1863
PspGI CCWGG 2 cut(s) 1246, 1863
PspN4I GGNNCC 5 cut(s) 28, 1113, 1768, 2332, 2484
PspPI GGNCC 6 cut(s) 27, 1861, 1888, 2431, 2482, 2581
PspPPI RGGWCCY 1 cut(s) 2482
PstI CTGCAG 4 cut(s) 744, 1568, 2568, 2605
PstNI CAGNNNCTG 1 cut(s) 169
PsuI RGATCY 3 cut(s) 595, 1030, 1111
PsyI GACNNNGTC 1 cut(s) 635
PvuII CAGCTG 1 cut(s) 2677
RsaI GTAC 3 cut(s) 671, 2810, 3143
RsaNI GTAC 3 cut(s) 670, 2809, 3142
RseI CAYNNNNRTG 2 cut(s) 1539, 1794
SalI GTCGAC 1 cut(s) 92
Sau96I GGNCC 6 cut(s) 27, 1861, 1888, 2431, 2482, 2581
ScaI AGTACT 1 cut(s) 3143
SchI GAGTC 6 cut(s) 99, 172, 751, 809, 833, 2132
ScrFI CCNGG 4 cut(s) 926, 1248, 1865, 2851
SfaNI GCATC 6 cut(s) 423, 1105, 1413, 1897, 2392, 2746
SfcI CTRYAG 6 cut(s) 564, 740, 1564, 2067, 2564, 2601
Sfr274I CTCGAG 1 cut(s) 913
SinI GGWCC 4 cut(s) 27, 1861, 1888, 2482
SlaI CTCGAG 1 cut(s) 913
SmiMI CAYNNNNRTG 2 cut(s) 1539, 1794
SmlI CTYRAG 8 cut(s) 212, 344, 353, 575, 913, 1682, 2201, 2585
SmoI CTYRAG 8 cut(s) 212, 344, 353, 575, 913, 1682, 2201, 2585
SseBI AGGCCT 1 cut(s) 39
SspI AATATT 1 cut(s) 265
SspMI CTAG 6 cut(s) 120, 1034, 1301, 1472, 1835, 3252
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 4 cut(s) 924, 1246, 1863, 2849
StyI CCWWGG 4 cut(s) 1141, 1195, 1454, 2142
TaaI ACNGT 8 cut(s) 565, 635, 1484, 1523, 2813, 2845, 3044, 3213
TaiI ACGT 1 cut(s) 1539
TaqI TCGA 5 cut(s) 93, 260, 914, 1493, 2712
TatI WGTACW 1 cut(s) 3141
TauI GCSGC 6 cut(s) 240, 458, 608, 768, 1805, 1994
TfiI GAWTC 9 cut(s) 329, 398, 724, 1073, 1123, 2153, 2402, 2408, 2624
TseFI GTSAC 2 cut(s) 307, 2264
Tsp45I GTSAC 2 cut(s) 307, 2264
TspGWI ACGGA 2 cut(s) 720, 2300
Tth111I GACNNNGTC 1 cut(s) 635
Van91I CCANNNNNTGG 2 cut(s) 282, 1826
Vha464I CTTAAG 2 cut(s) 344, 353
VpaK11BI GGWCC 4 cut(s) 27, 1861, 1888, 2482
VspI ATTAAT 1 cut(s) 543
XapI RAATTY 9 cut(s) 569, 796, 908, 949, 1588, 1997, 2087, 2470, 2492
XbaI TCTAGA 3 cut(s) 1033, 1300, 1834
XceI RCATGY 3 cut(s) 389, 1230, 1263
XcmI CCANNNNNNNNNTGG 1 cut(s) 2950
XhoI CTCGAG 1 cut(s) 913
XmiI GTMKAC 3 cut(s) 93, 3046, 3324
XmnI GAANNNNTTC 1 cut(s) 2496
XspI CTAG 6 cut(s) 120, 1034, 1301, 1472, 1835, 3252
ZrmI AGTACT 1 cut(s) 3143
Zsp2I ATGCAT 2 cut(s) 1844, 1885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.