RNA processing
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G13680 |
| fragaria_vesca | FvH4_7g21920 FvH4_7g21920 FvH4_7g21920 FvH4_7g21920 FvH4_7g21920 |
| malus_domestica | MD01G1123800.v1.1 MD07G1193500.v1.1 |
| prunus_persica | Prupe.2G231100_v2.0.a1 Prupe.2G231100_v2.0.a1 Prupe.2G231100_v2.0.a1 Prupe.2G231100_v2.0.a1 |
| pyrus_communis | pycom01g15030 pycom07g18260 |
| rosa_chinensis | RchiOBHm_Chr1g0366221 |
| rosa_laevigata | RLG00000019775 RLG00000027362 |
| rosa_multiflora | Rmu_co8487329.1_g000001 Rmu_sc0003736.1_g000001 Rmu_sc0009109.1_g000005 Rmu_sc0020121.1_g000003 |
| rosa_rugosa | Rorug01G0328000 |
| rosa_samantha | Rh1AG336100 Rh1BG297500 Rh1CG313400 Rh1DG329200 Rh6AG107900 |
| rosa_wichuraiana | Rw1G029810 Rw6G009290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 5070, 7208 |
| AarI | CACCTGC | 1 cut(s) | 7423 |
| Acc36I | ACCTGC | 5 cut(s) | 19, 322, 5392, 7423, 7459 |
| AccB1I | GGYRCC | 1 cut(s) | 7226 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1358, 5742, 7286 |
| AccI | GTMKAC | 5 cut(s) | 2160, 2252, 2754, 5553, 8506 |
| AccII | CGCG | 3 cut(s) | 41, 5399, 5748 |
| AccIII | TCCGGA | 1 cut(s) | 5584 |
| AclI | AACGTT | 3 cut(s) | 1521, 2978, 4612 |
| AcoI | YGGCCR | 6 cut(s) | 1345, 2837, 3142, 4163, 6226, 7644 |
| AcuI | CTGAAG | 8 cut(s) | 429, 779, 800, 4908, 5706, 7848, 8117, 8688 |
| AcvI | CACGTG | 2 cut(s) | 341, 3329 |
| AcyI | GRCGYC | 5 cut(s) | 331, 3022, 5550, 7387, 8815 |
| AdeI | CACNNNGTG | 1 cut(s) | 6644 |
| AflII | CTTAAG | 5 cut(s) | 743, 785, 3994, 5804, 5813 |
| AflIII | ACRYGT | 2 cut(s) | 1135, 3420 |
| AgeI | ACCGGT | 1 cut(s) | 3121 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 4812, 6946 |
| AjiI | CACGTC | 3 cut(s) | 1272, 1854, 6997 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 8525, 8557 |
| AleI | CACNNNNGTG | 2 cut(s) | 5162, 6999 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 3407, 3439, 6034, 6066 |
| Alw21I | GWGCWC | 5 cut(s) | 69, 99, 2614, 3334, 5271 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1358, 5629 |
| Ama87I | CYCGRG | 7 cut(s) | 349, 462, 654, 4177, 4478, 6373, 6870 |
| Aor13HI | TCCGGA | 1 cut(s) | 5584 |
| ApaI | GGGCCC | 3 cut(s) | 165, 357, 4105 |
| AseI | ATTAAT | 1 cut(s) | 6003 |
| AsiGI | ACCGGT | 1 cut(s) | 3121 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 188, 2130, 2488, 3062, 7956 |
| AsuC2I | CCSGG | 4 cut(s) | 4178, 4179, 6386, 8311 |
| AsuII | TTCGAA | 2 cut(s) | 2118, 4297 |
| AsuNHI | GCTAGC | 3 cut(s) | 4946, 8711, 8792 |
| AvaI | CYCGRG | 7 cut(s) | 349, 462, 654, 4177, 4478, 6373, 6870 |
| BaeGI | GKGCMC | 5 cut(s) | 165, 346, 357, 4105, 5190 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1838, 1871 |
| BalI | TGGCCA | 3 cut(s) | 2839, 4165, 7646 |
| BamHI | GGATCC | 2 cut(s) | 1361, 6571 |
| BanI | GGYRCC | 1 cut(s) | 7226 |
| BanII | GRGCYC | 8 cut(s) | 9, 69, 99, 165, 357, 1672, 4105, 5271 |
| BauI | CACGAG | 3 cut(s) | 2685, 5366, 7284 |
| BbrPI | CACGTG | 2 cut(s) | 341, 3329 |
| BbsI | GAAGAC | 1 cut(s) | 6657 |
| Bbv12I | GWGCWC | 5 cut(s) | 69, 99, 2614, 3334, 5271 |
| BceAI | ACGGC | 6 cut(s) | 28, 3157, 4245, 5572, 6053, 6248 |
| BciVI | GTATCC | 1 cut(s) | 9055 |
| BclI | TGATCA | 6 cut(s) | 1060, 2941, 3448, 4453, 7057, 7065 |
| BcnI | CCSGG | 4 cut(s) | 4178, 4179, 6386, 8311 |
| BfoI | RGCGCY | 2 cut(s) | 23, 5202 |
| BfrI | CTTAAG | 5 cut(s) | 743, 785, 3994, 5804, 5813 |
| BfuAI | ACCTGC | 5 cut(s) | 19, 322, 5392, 7423, 7459 |
| BfuI | GTATCC | 1 cut(s) | 9055 |
| BglII | AGATCT | 2 cut(s) | 6055, 6490 |
| BlpI | GCTNAGC | 1 cut(s) | 4471 |
| BmcAI | AGTACT | 3 cut(s) | 3816, 8603, 9100 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 4812, 6946 |
| BmeT110I | CYCGRG | 7 cut(s) | 349, 462, 654, 4177, 4478, 6373, 6870 |
| BmgBI | CACGTC | 3 cut(s) | 1272, 1854, 6997 |
| BmrI | ACTGGG | 7 cut(s) | 1755, 5622, 5628, 8135, 8333, 8479, 8757 |
| BmtI | GCTAGC | 3 cut(s) | 4950, 8715, 8796 |
| BmuI | ACTGGG | 7 cut(s) | 1755, 5622, 5628, 8135, 8333, 8479, 8757 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2667 |
| BpiI | GAAGAC | 1 cut(s) | 6657 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2596, 2628, 2668, 2700 |
| BpmI | CTGGAG | 7 cut(s) | 1610, 5228, 5345, 6730, 8227, 8435, 9009 |
| Bpu10I | CCTNAGC | 2 cut(s) | 837, 6724 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4471 |
| Bpu14I | TTCGAA | 2 cut(s) | 2118, 4297 |
| BpuMI | CCSGG | 4 cut(s) | 4178, 4179, 6386, 8311 |
| BsaAI | YACGTR | 2 cut(s) | 341, 3329 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3957 |
| BsaHI | GRCGYC | 5 cut(s) | 331, 3022, 5550, 7387, 8815 |
| BsaI | GGTCTC | 3 cut(s) | 3130, 5236, 6761 |
| BsaWI | WCCGGW | 4 cut(s) | 3121, 3217, 5584, 7675 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2449, 2479, 3028, 3058, 6930, 6960 |
| Bse118I | RCCGGY | 1 cut(s) | 3121 |
| Bse3DI | GCAATG | 7 cut(s) | 292, 1029, 3710, 4519, 5736, 7345, 8203 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3957 |
| BseAI | TCCGGA | 1 cut(s) | 5584 |
| BseJI | GATNNNNATC | 1 cut(s) | 3957 |
| BseMI | GCAATG | 7 cut(s) | 292, 1029, 3710, 4519, 5736, 7345, 8203 |
| BseRI | GAGGAG | 4 cut(s) | 2457, 5311, 5344, 8873 |
| BseSI | GKGCMC | 5 cut(s) | 165, 346, 357, 4105, 5190 |
| BseX3I | CGGCCG | 1 cut(s) | 3142 |
| BseYI | CCCAGC | 2 cut(s) | 795, 1018 |
| BsgI | GTGCAG | 7 cut(s) | 830, 2753, 5652, 6977, 7719, 8571, 8808 |
| Bsh1236I | CGCG | 3 cut(s) | 41, 5399, 5748 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3145 |
| BshNI | GGYRCC | 1 cut(s) | 7226 |
| BshTI | ACCGGT | 1 cut(s) | 3121 |
| BsiEI | CGRYCG | 1 cut(s) | 3145 |
| BsiHKAI | GWGCWC | 5 cut(s) | 69, 99, 2614, 3334, 5271 |
| BsiHKCI | CYCGRG | 7 cut(s) | 349, 462, 654, 4177, 4478, 6373, 6870 |
| BsiSI | CCGG | 8 cut(s) | 1874, 3122, 3218, 4178, 5585, 6385, 7676, 8310 |
| BsmBI | CGTCTC | 2 cut(s) | 2398, 7526 |
| Bso31I | GGTCTC | 3 cut(s) | 3130, 5236, 6761 |
| BsoBI | CYCGRG | 7 cut(s) | 349, 462, 654, 4177, 4478, 6373, 6870 |
| Bsp119I | TTCGAA | 2 cut(s) | 2118, 4297 |
| Bsp120I | GGGCCC | 3 cut(s) | 161, 353, 4101 |
| Bsp13I | TCCGGA | 1 cut(s) | 5584 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4471 |
| Bsp19I | CCATGG | 3 cut(s) | 196, 2748, 6601 |
| BspEI | TCCGGA | 1 cut(s) | 5584 |
| BspFNI | CGCG | 3 cut(s) | 41, 5399, 5748 |
| BspHI | TCATGA | 2 cut(s) | 3745, 8353 |
| BspMAI | CTGCAG | 8 cut(s) | 3822, 4374, 5020, 6204, 7028, 8028, 8065, 8982 |
| BspMI | ACCTGC | 5 cut(s) | 19, 322, 5392, 7423, 7459 |
| BspOI | GCTAGC | 3 cut(s) | 4950, 8715, 8796 |
| BspQI | GCTCTTC | 4 cut(s) | 275, 1677, 3318, 5259 |
| BspT104I | TTCGAA | 2 cut(s) | 2118, 4297 |
| BspT107I | GGYRCC | 1 cut(s) | 7226 |
| BspTI | CTTAAG | 5 cut(s) | 743, 785, 3994, 5804, 5813 |
| BspTNI | GGTCTC | 3 cut(s) | 3130, 5236, 6761 |
| BsrDI | GCAATG | 7 cut(s) | 292, 1029, 3710, 4519, 5736, 7345, 8203 |
| BsrFI | RCCGGY | 1 cut(s) | 3121 |
| BssAI | RCCGGY | 1 cut(s) | 3121 |
| BssNI | GRCGYC | 5 cut(s) | 331, 3022, 5550, 7387, 8815 |
| BssSI | CACGAG | 3 cut(s) | 2685, 5366, 7284 |
| BssT1I | CCWWGG | 7 cut(s) | 196, 2748, 2888, 6601, 6655, 6914, 7602 |
| Bst2BI | CACGAG | 3 cut(s) | 2685, 5366, 7284 |
| BstACI | GRCGYC | 5 cut(s) | 331, 3022, 5550, 7387, 8815 |
| BstAFI | CTTAAG | 5 cut(s) | 743, 785, 3994, 5804, 5813 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 236, 7023, 7099, 8807 |
| BstBAI | YACGTR | 2 cut(s) | 341, 3329 |
| BstBI | TTCGAA | 2 cut(s) | 2118, 4297 |
| BstDSI | CCRYGG | 5 cut(s) | 39, 196, 604, 2748, 6601 |
| BstEII | GGTNACC | 3 cut(s) | 1409, 2558, 3511 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3254 |
| BstFNI | CGCG | 3 cut(s) | 41, 5399, 5748 |
| BstH2I | RGCGCY | 2 cut(s) | 23, 5202 |
| BstMCI | CGRYCG | 1 cut(s) | 3145 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2667 |
| BstPI | GGTNACC | 3 cut(s) | 1409, 2558, 3511 |
| BstSLI | GKGCMC | 5 cut(s) | 165, 346, 357, 4105, 5190 |
| BstUI | CGCG | 3 cut(s) | 41, 5399, 5748 |
| BstV2I | GAAGAC | 1 cut(s) | 6657 |
| BstX2I | RGATCY | 8 cut(s) | 650, 1120, 1361, 1938, 2475, 6055, 6490, 6571 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1214 |
| BstYI | RGATCY | 8 cut(s) | 650, 1120, 1361, 1938, 2475, 6055, 6490, 6571 |
| BstZI | CGGCCG | 1 cut(s) | 3142 |
| BsuI | GTATCC | 1 cut(s) | 9055 |
| BtgI | CCRYGG | 5 cut(s) | 39, 196, 604, 2748, 6601 |
| BtrI | CACGTC | 3 cut(s) | 1272, 1854, 6997 |
| BtsI | GCAGTG | 4 cut(s) | 1999, 2331, 6197, 7821 |
| BveI | ACCTGC | 5 cut(s) | 19, 322, 5392, 7423, 7459 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1358, 5629 |
| CciI | TCATGA | 2 cut(s) | 3745, 8353 |
| Cfr10I | RCCGGY | 1 cut(s) | 3121 |
| Cfr42I | CCGCGG | 1 cut(s) | 42 |
| Cfr9I | CCCGGG | 1 cut(s) | 4177 |
| CsiI | ACCWGGT | 1 cut(s) | 859 |
| CspAI | ACCGGT | 1 cut(s) | 3121 |
| DraIII | CACNNNGTG | 1 cut(s) | 6644 |
| DriI | GACNNNNNGTC | 2 cut(s) | 4812, 6946 |
| EaeI | YGGCCR | 6 cut(s) | 1345, 2837, 3142, 4163, 6226, 7644 |
| EagI | CGGCCG | 1 cut(s) | 3142 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 4812, 6946 |
| EciI | GGCGGA | 3 cut(s) | 59, 4980, 5314 |
| Ecl136II | GAGCTC | 3 cut(s) | 67, 97, 5269 |
| EclXI | CGGCCG | 1 cut(s) | 3142 |
| Eco130I | CCWWGG | 7 cut(s) | 196, 2748, 2888, 6601, 6655, 6914, 7602 |
| Eco147I | AGGCCT | 1 cut(s) | 5499 |
| Eco24I | GRGCYC | 8 cut(s) | 9, 69, 99, 165, 357, 1672, 4105, 5271 |
| Eco31I | GGTCTC | 3 cut(s) | 3130, 5236, 6761 |
| Eco32I | GATATC | 1 cut(s) | 4418 |
| Eco52I | CGGCCG | 1 cut(s) | 3142 |
| Eco53kI | GAGCTC | 3 cut(s) | 67, 97, 5269 |
| Eco57I | CTGAAG | 8 cut(s) | 429, 779, 800, 4908, 5706, 7848, 8117, 8688 |
| Eco72I | CACGTG | 2 cut(s) | 341, 3329 |
| Eco88I | CYCGRG | 7 cut(s) | 349, 462, 654, 4177, 4478, 6373, 6870 |
| Eco91I | GGTNACC | 3 cut(s) | 1409, 2558, 3511 |
| EcoICRI | GAGCTC | 3 cut(s) | 67, 97, 5269 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3254 |
| EcoO109I | RGGNCCY | 7 cut(s) | 161, 353, 841, 3154, 4101, 7942, 8041 |
| EcoO65I | GGTNACC | 3 cut(s) | 1409, 2558, 3511 |
| EcoRI | GAATTC | 6 cut(s) | 2512, 4182, 6256, 6409, 7930, 7952 |
| EcoRV | GATATC | 1 cut(s) | 4418 |
| EcoT14I | CCWWGG | 7 cut(s) | 196, 2748, 2888, 6601, 6655, 6914, 7602 |
| EcoT22I | ATGCAT | 5 cut(s) | 3629, 4193, 4540, 7304, 7345 |
| EcoT38I | GRGCYC | 8 cut(s) | 9, 69, 99, 165, 357, 1672, 4105, 5271 |
| ErhI | CCWWGG | 7 cut(s) | 196, 2748, 2888, 6601, 6655, 6914, 7602 |
| Esp3I | CGTCTC | 2 cut(s) | 2398, 7526 |
| FauI | CCCGC | 2 cut(s) | 202, 5404 |
| FauNDI | CATATG | 4 cut(s) | 5702, 6251, 7214, 9012 |
| FbaI | TGATCA | 6 cut(s) | 1060, 2941, 3448, 4453, 7057, 7065 |
| FblI | GTMKAC | 5 cut(s) | 2160, 2252, 2754, 5553, 8506 |
| FriOI | GRGCYC | 8 cut(s) | 9, 69, 99, 165, 357, 1672, 4105, 5271 |
| GsaI | CCCAGC | 2 cut(s) | 799, 1022 |
| GsuI | CTGGAG | 7 cut(s) | 1610, 5228, 5345, 6730, 8227, 8435, 9009 |
| HaeII | RGCGCY | 2 cut(s) | 23, 5202 |
| HapII | CCGG | 8 cut(s) | 1874, 3122, 3218, 4178, 5585, 6385, 7676, 8310 |
| Hin1I | GRCGYC | 5 cut(s) | 331, 3022, 5550, 7387, 8815 |
| HincII | GTYRAC | 6 cut(s) | 1243, 1927, 2672, 3439, 5554, 7417 |
| HindII | GTYRAC | 6 cut(s) | 1243, 1927, 2672, 3439, 5554, 7417 |
| HindIII | AAGCTT | 8 cut(s) | 376, 435, 782, 1647, 2241, 3225, 6884, 8478 |
| HpaI | GTTAAC | 2 cut(s) | 1243, 1927 |
| HpaII | CCGG | 8 cut(s) | 1874, 3122, 3218, 4178, 5585, 6385, 7676, 8310 |
| Hpy99I | CGWCG | 6 cut(s) | 14, 5546, 5555, 5558, 6167, 8177 |
| Hsp92I | GRCGYC | 5 cut(s) | 331, 3022, 5550, 7387, 8815 |
| Kpn2I | TCCGGA | 1 cut(s) | 5584 |
| Ksp22I | TGATCA | 6 cut(s) | 1060, 2941, 3448, 4453, 7057, 7065 |
| KspAI | GTTAAC | 2 cut(s) | 1243, 1927 |
| KspI | CCGCGG | 1 cut(s) | 42 |
| LguI | GCTCTTC | 4 cut(s) | 275, 1677, 3318, 5259 |
| MabI | ACCWGGT | 1 cut(s) | 859 |
| MfeI | CAATTG | 1 cut(s) | 1040 |
| MflI | RGATCY | 8 cut(s) | 650, 1120, 1361, 1938, 2475, 6055, 6490, 6571 |
| MlsI | TGGCCA | 3 cut(s) | 2839, 4165, 7646 |
| MluNI | TGGCCA | 3 cut(s) | 2839, 4165, 7646 |
| Mox20I | TGGCCA | 3 cut(s) | 2839, 4165, 7646 |
| Mph1103I | ATGCAT | 5 cut(s) | 3629, 4193, 4540, 7304, 7345 |
| MroI | TCCGGA | 1 cut(s) | 5584 |
| MroXI | GAANNNNTTC | 5 cut(s) | 188, 2130, 2488, 3062, 7956 |
| MscI | TGGCCA | 3 cut(s) | 2839, 4165, 7646 |
| Msp20I | TGGCCA | 3 cut(s) | 2839, 4165, 7646 |
| MspA1I | CMGCKG | 7 cut(s) | 41, 939, 4702, 5918, 7265, 7451, 8137 |
| MspCI | CTTAAG | 5 cut(s) | 743, 785, 3994, 5804, 5813 |
| MspI | CCGG | 8 cut(s) | 1874, 3122, 3218, 4178, 5585, 6385, 7676, 8310 |
| MteI | GCGCNGCGC | 1 cut(s) | 18 |
| MunI | CAATTG | 1 cut(s) | 1040 |
| MvnI | CGCG | 3 cut(s) | 41, 5399, 5748 |
| NciI | CCSGG | 4 cut(s) | 4178, 4179, 6386, 8311 |
| NcoI | CCATGG | 3 cut(s) | 196, 2748, 6601 |
| NdeI | CATATG | 4 cut(s) | 5702, 6251, 7214, 9012 |
| NheI | GCTAGC | 3 cut(s) | 4946, 8711, 8792 |
| NmeAIII | GCCGAG | 3 cut(s) | 934, 5261, 5455 |
| NmuCI | GTSAC | 8 cut(s) | 1409, 2558, 3023, 3500, 4909, 5404, 5767, 7724 |
| NsiI | ATGCAT | 5 cut(s) | 3629, 4193, 4540, 7304, 7345 |
| NspV | TTCGAA | 2 cut(s) | 2118, 4297 |
| OliI | CACNNNNGTG | 2 cut(s) | 5162, 6999 |
| PaeI | GCATGC | 2 cut(s) | 3578, 4538 |
| PaeR7I | CTCGAG | 4 cut(s) | 462, 654, 4478, 6373 |
| PagI | TCATGA | 2 cut(s) | 3745, 8353 |
| PaqCI | CACCTGC | 1 cut(s) | 7423 |
| PceI | AGGCCT | 1 cut(s) | 5499 |
| PciI | ACATGT | 2 cut(s) | 1135, 3420 |
| PciSI | GCTCTTC | 4 cut(s) | 275, 1677, 3318, 5259 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 3147, 5547, 5550, 5559 |
| PdmI | GAANNNNTTC | 5 cut(s) | 188, 2130, 2488, 3062, 7956 |
| PflFI | GACNNNGTC | 1 cut(s) | 6095 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1358, 5742, 7286 |
| PfoI | TCCNGGA | 1 cut(s) | 6384 |
| PinAI | ACCGGT | 1 cut(s) | 3121 |
| PmaCI | CACGTG | 2 cut(s) | 341, 3329 |
| PmlI | CACGTG | 2 cut(s) | 341, 3329 |
| Ppu21I | YACGTR | 2 cut(s) | 341, 3329 |
| PpuMI | RGGWCCY | 2 cut(s) | 3154, 7942 |
| PscI | ACATGT | 2 cut(s) | 1135, 3420 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2667 |
| PshBI | ATTAAT | 1 cut(s) | 6003 |
| PsiI | TTATAA | 2 cut(s) | 5070, 7208 |
| Psp124BI | GAGCTC | 3 cut(s) | 69, 99, 5271 |
| Psp1406I | AACGTT | 3 cut(s) | 1521, 2978, 4612 |
| Psp5II | RGGWCCY | 2 cut(s) | 3154, 7942 |
| PspCI | CACGTG | 2 cut(s) | 341, 3329 |
| PspEI | GGTNACC | 3 cut(s) | 1409, 2558, 3511 |
| PspFI | CCCAGC | 2 cut(s) | 795, 1018 |
| PspOMI | GGGCCC | 3 cut(s) | 161, 353, 4101 |
| PspPPI | RGGWCCY | 2 cut(s) | 3154, 7942 |
| PspXI | VCTCGAGB | 1 cut(s) | 462 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 2674, 2706, 4740, 4772 |
| PstI | CTGCAG | 8 cut(s) | 3822, 4374, 5020, 6204, 7028, 8028, 8065, 8982 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1358, 5629 |
| PsuI | RGATCY | 8 cut(s) | 650, 1120, 1361, 1938, 2475, 6055, 6490, 6571 |
| PsyI | GACNNNGTC | 1 cut(s) | 6095 |
| PvuII | CAGCTG | 3 cut(s) | 4702, 5918, 8137 |
| SacI | GAGCTC | 3 cut(s) | 69, 99, 5271 |
| SacII | CCGCGG | 1 cut(s) | 42 |
| SalI | GTCGAC | 1 cut(s) | 5552 |
| SapI | GCTCTTC | 4 cut(s) | 275, 1677, 3318, 5259 |
| ScaI | AGTACT | 3 cut(s) | 3816, 8603, 9100 |
| SexAI | ACCWGGT | 1 cut(s) | 859 |
| Sfr274I | CTCGAG | 4 cut(s) | 462, 654, 4478, 6373 |
| Sfr303I | CCGCGG | 1 cut(s) | 42 |
| SfuI | TTCGAA | 2 cut(s) | 2118, 4297 |
| SgrBI | CCGCGG | 1 cut(s) | 42 |
| SgrDI | CGTCGACG | 1 cut(s) | 5552 |
| SlaI | CTCGAG | 4 cut(s) | 462, 654, 4478, 6373 |
| SmaI | CCCGGG | 1 cut(s) | 4179 |
| SphI | GCATGC | 2 cut(s) | 3578, 4538 |
| SseBI | AGGCCT | 1 cut(s) | 5499 |
| SspI | AATATT | 4 cut(s) | 2698, 3691, 4511, 5725 |
| SstI | GAGCTC | 3 cut(s) | 69, 99, 5271 |
| StuI | AGGCCT | 1 cut(s) | 5499 |
| StyI | CCWWGG | 7 cut(s) | 196, 2748, 2888, 6601, 6655, 6914, 7602 |
| TaqII | GACCGA | 1 cut(s) | 3519 |
| TatI | WGTACW | 6 cut(s) | 867, 872, 2009, 3814, 8601, 9098 |
| TseFI | GTSAC | 8 cut(s) | 1409, 2558, 3023, 3500, 4909, 5404, 5767, 7724 |
| Tsp45I | GTSAC | 8 cut(s) | 1409, 2558, 3023, 3500, 4909, 5404, 5767, 7724 |
| TspMI | CCCGGG | 1 cut(s) | 4177 |
| Tth111I | GACNNNGTC | 1 cut(s) | 6095 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1358, 5742, 7286 |
| Vha464I | CTTAAG | 5 cut(s) | 743, 785, 3994, 5804, 5813 |
| VspI | ATTAAT | 1 cut(s) | 6003 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3254 |
| XbaI | TCTAGA | 4 cut(s) | 617, 6493, 6760, 7294 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 1355, 1961, 5001, 8410 |
| XhoI | CTCGAG | 4 cut(s) | 462, 654, 4478, 6373 |
| XmaI | CCCGGG | 1 cut(s) | 4177 |
| XmiI | GTMKAC | 5 cut(s) | 2160, 2252, 2754, 5553, 8506 |
| XmnI | GAANNNNTTC | 5 cut(s) | 188, 2130, 2488, 3062, 7956 |
| ZrmI | AGTACT | 3 cut(s) | 3816, 8603, 9100 |
| Zsp2I | ATGCAT | 5 cut(s) | 3629, 4193, 4540, 7304, 7345 |