Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005246

Physical Location & Seq

Genomic Coordinates Reverse (-)

15756497 .. 15758710

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG107900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGGCGAATATCCGTGGAGTTAATTCTAGAGATTCTGTGCCTTCATCAGTTGAGCAAGGATCTCTAGCTGGAAATTTCAATTCCATGAACAATAATATAGTGATCAGAGAGCGTGGATATGAACTTCAAGACTTGCGACAGCAGATTGTACTTGAGGAAACTGAACTGAAGCTTAAGTCTGCTCAGCGAACTAAGGAATCAGTTACACGCAAGGATGATAATGCTAAGGGCCTATACAAAGATGGAGCTGATAAGTGCAGTACAGGATATTCTAATGGTATGCAGATAGAACCAAAAGAGCCAGATAAAAAGCTTACAAAAATCAGTGGCGCCTTTTCCACTCAGCTAACTGCACTAAGCCCACAAGAAGTAGTTGTTGCAGAAAAACCCCCAACAATGGAGGACAATACTCAATTGGACGCCAGGATGATTGATCATCTTCAAAAAGAAAATCAAGTGCATCCAACAGAGTCGTGCATTGTAAAATTGCAAAATCCTAATGATAAACATGTTGTTGGAATGTCGGGAAATATACATACTGGAGTGAAAGATGGTGCTGGCATTAATGCTAAACACATCCAGTCTGATGGAAGGGGTAAGCAGATGGGTTCCTTTGTCACACCAAACCAGGCTAAATCACTGAATAGTGTGGAGTTGAATCATACAAATACAAACAGAGGTCATTCAGAACCTGGATCCTTCTTAAACAATCCAACATCAGAAAAGAATTCTATGAGAAGTGGTGACCATCAGGAAACCATGTCCATTGACAAGAGACATGAGCCCTCATTCTACCGTACATGTCAGGCACTCCTAAACAACACAAACCTTTCGAATTGTTTTGGTAATGCAAGCGTTACAGGAGATGACAACACGAAGATGCAGTCATTGGTTAAAATGGAGGAAATGCTAGACAAGAATCTGGAGGAAACACAACAGCATAGGCAAAGGTGTGAAATTAAAGAACAAAATGCTCTTAAAGCTTATCGTAAAGCGCAGAGGGCTCTTCTTGAGGCGAATGCTAGGTATGATGTTCTTTATCGGAAAAGGGAACTATATTCTGCCGACTTCCGCTCATATGTTATTGACAATCCCAGTTTCTTATATTCCTCAAGGCAGAACGAACAAGCTGGACTTGGGTTGGATTACACTAATAACTTGTCTGAAAATGTGAATTTAATACCCATGTCAAGCCATCAGATGGCGCAGGAGCATAATGGTTGCAATCTAGCAGTTATTGATTCCAATATCCAATGCGTTAACGGTGTTCAGATCCCCAATTCCTACCAGCATTTGAGTGGAGAAAACATTGGCTCAGAACCATGCAGTGAACCTGACGCTAGTACATCTGAGACAATGCCTCTTCTGGGGAATAATGGCACAGATGGAGTTTGCTCTCCATCCAATGAACCAAATGGTTCAACAAATGAAGATGATGATATATATTCATTCAAAAATGAATCTGCTCAACCCAACAATGAATGCCATATTGCAGACAACCAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3H1

Protein Analysis

502

Amino Acids

55.66

Weight (kDa)

5.47

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13680
fragaria_vesca	FvH4_7g21920 FvH4_7g21920 FvH4_7g21920 FvH4_7g21920 FvH4_7g21920
malus_domestica	MD01G1123800.v1.1 MD07G1193500.v1.1
prunus_persica	Prupe.2G231100_v2.0.a1 Prupe.2G231100_v2.0.a1 Prupe.2G231100_v2.0.a1 Prupe.2G231100_v2.0.a1
pyrus_communis	pycom01g15030 pycom07g18260
rosa_chinensis	RchiOBHm_Chr1g0366221
rosa_laevigata	RLG00000019775 RLG00000027362
rosa_multiflora	Rmu_co8487329.1_g000001 Rmu_sc0003736.1_g000001 Rmu_sc0009109.1_g000005 Rmu_sc0020121.1_g000003
rosa_rugosa	Rorug01G0328000
rosa_samantha	Rh1AG336100 Rh1BG297500 Rh1CG313400 Rh1DG329200 Rh6AG107900
rosa_wichuraiana	Rw1G029810 Rw6G009290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	329
AccB7I	CCANNNNNTGG	1 cut(s)	1201
AccBSI	CCGCTC	1 cut(s)	1074
AciI	CCGC	1 cut(s)	1072
AclWI	GGATC	4 cut(s)	67, 690, 703, 1267
AcsI	RAATTY	3 cut(s)	73, 727, 1174
AcuI	CTGAAG	1 cut(s)	188
AcyI	GRCGYC	2 cut(s)	330, 420
AfaI	GTAC	4 cut(s)	150, 262, 799, 1345
AfiI	CCNNNNNNNGG	3 cut(s)	397, 1201, 1367
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	2 cut(s)	508, 800
AgsI	TTSAA	6 cut(s)	79, 128, 443, 658, 1422, 1453
AjnI	CCWGG	3 cut(s)	422, 627, 691
AluBI	AGCT	7 cut(s)	68, 172, 248, 313, 346, 983, 1130
AluI	AGCT	7 cut(s)	68, 172, 248, 313, 346, 983, 1130
Alw26I	GTCTC	2 cut(s)	769, 1346
AlwI	GGATC	4 cut(s)	67, 690, 703, 1267
AlwNI	CAGNNNCTG	1 cut(s)	692
AoxI	GGCC	1 cut(s)	229
ApoI	RAATTY	3 cut(s)	73, 727, 1174
ArsI	GACNNNNNNTTYG	2 cut(s)	869, 901
AseI	ATTAAT	1 cut(s)	564
AspLEI	GCGC	3 cut(s)	332, 997, 1207
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	755
AsuII	TTCGAA	1 cut(s)	833
BamHI	GGATCC	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	2 cut(s)	786, 1006
BccI	CCATC	9 cut(s)	236, 545, 581, 598, 756, 1195, 1203, 1379, 1408
BciT130I	CCWGG	3 cut(s)	424, 629, 693
BclI	TGATCA	2 cut(s)	102, 433
BcoDI	GTCTC	2 cut(s)	769, 1346
BfaI	CTAG	6 cut(s)	27, 65, 911, 1023, 1229, 1341
BfoI	RGCGCY	1 cut(s)	333
BfrI	CTTAAG	1 cut(s)	173
BlpI	GCTNAGC	1 cut(s)	183
Bme1390I	CCNGG	3 cut(s)	424, 629, 693
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	3 cut(s)	331, 610, 697
BmrFI	CCNGG	3 cut(s)	424, 629, 693
BmrI	ACTGGG	1 cut(s)	1089
BmsI	GCATC	2 cut(s)	469, 870
BmuI	ACTGGG	1 cut(s)	1089
BpmI	CTGGAG	2 cut(s)	561, 944
Bpu10I	CCTNAGC	1 cut(s)	225
Bpu1102I	GCTNAGC	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	833
BpuEI	CTTGAG	3 cut(s)	173, 1031, 1096
BsaHI	GRCGYC	2 cut(s)	330, 420
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	3 cut(s)	397, 1201, 1367
Bse1I	ACTGG	3 cut(s)	544, 580, 1095
BseBI	CCWGG	3 cut(s)	424, 629, 693
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	5 cut(s)	220, 432, 460, 576, 1400
BseLI	CCNNNNNNNGG	3 cut(s)	397, 1201, 1367
BseMII	CTCAG	4 cut(s)	197, 356, 1329, 1341
BseNI	ACTGG	3 cut(s)	544, 580, 1095
BsgI	GTGCAG	3 cut(s)	277, 336, 408
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	329
BslI	CCNNNNNNNGG	3 cut(s)	397, 1201, 1367
BsmAI	GTCTC	2 cut(s)	769, 1346
BsmI	GAATGC	2 cut(s)	1024, 1487
BsnI	GGCC	1 cut(s)	231
Bsp119I	TTCGAA	1 cut(s)	833
Bsp1286I	GDGCHC	2 cut(s)	786, 1006
Bsp143I	GATC	5 cut(s)	59, 102, 433, 695, 1272
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	1072
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	4 cut(s)	196, 355, 1328, 1342
BspLI	GGNNCC	3 cut(s)	331, 610, 697
BspPI	GGATC	4 cut(s)	67, 690, 703, 1267
BspQI	GCTCTTC	1 cut(s)	1011
BspT104I	TTCGAA	1 cut(s)	833
BspT107I	GGYRCC	1 cut(s)	329
BspTI	CTTAAG	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	1074
BsrI	ACTGG	3 cut(s)	544, 580, 1095
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	5 cut(s)	59, 102, 433, 695, 1272
BssNI	GRCGYC	2 cut(s)	330, 420
Bst2UI	CCWGG	3 cut(s)	424, 629, 693
Bst4CI	ACNGT	2 cut(s)	797, 1265
Bst6I	CTCTTC	2 cut(s)	1011, 1368
BstACI	GRCGYC	2 cut(s)	330, 420
BstAFI	CTTAAG	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	833
BstC8I	GCNNGC	2 cut(s)	559, 853
BstDEI	CTNAG	7 cut(s)	183, 192, 225, 342, 356, 1315, 1350
BstDSI	CCRYGG	1 cut(s)	13
BstEII	GGTNACC	1 cut(s)	743
BstF5I	GGATG	5 cut(s)	220, 432, 460, 576, 1400
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	3 cut(s)	332, 997, 1207
BstKTI	GATC	5 cut(s)	62, 105, 436, 698, 1275
BstMAI	GTCTC	2 cut(s)	769, 1346
BstMBI	GATC	5 cut(s)	59, 102, 433, 695, 1272
BstMWI	GCNNNNNNNGC	2 cut(s)	980, 1001
BstNI	CCWGG	3 cut(s)	424, 629, 693
BstNSI	RCATGY	2 cut(s)	512, 804
BstPI	GGTNACC	1 cut(s)	743
BstSCI	CCNGG	3 cut(s)	422, 627, 691
BstX2I	RGATCY	3 cut(s)	59, 695, 1272
BstXI	CCANNNNNNTGG	1 cut(s)	587
BstYI	RGATCY	3 cut(s)	59, 695, 1272
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	13
BtsCI	GGATG	5 cut(s)	220, 432, 460, 576, 1400
BtsI	GCAGTG	1 cut(s)	1333
BtsIMutI	CAGTG	3 cut(s)	331, 638, 1333
Cac8I	GCNNGC	2 cut(s)	559, 853
CaiI	CAGNNNCTG	1 cut(s)	692
CfoI	GCGC	3 cut(s)	332, 997, 1207
Cfr13I	GGNCC	1 cut(s)	229
CseI	GACGC	2 cut(s)	428, 1346
Csp6I	GTAC	4 cut(s)	149, 261, 798, 1344
CviAII	CATG	7 cut(s)	85, 509, 760, 779, 801, 1186, 1323
CviQI	GTAC	4 cut(s)	149, 261, 798, 1344
DdeI	CTNAG	7 cut(s)	183, 192, 225, 342, 356, 1315, 1350
DinI	GGCGCC	1 cut(s)	331
DpnI	GATC	5 cut(s)	61, 104, 435, 697, 1274
DpnII	GATC	5 cut(s)	59, 102, 433, 695, 1272
Eam1104I	CTCTTC	2 cut(s)	1011, 1368
EarI	CTCTTC	2 cut(s)	1011, 1368
Eco24I	GRGCYC	2 cut(s)	786, 1006
Eco57I	CTGAAG	1 cut(s)	188
Eco91I	GGTNACC	1 cut(s)	743
EcoO109I	RGGNCCY	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	743
EcoRI	GAATTC	1 cut(s)	727
EcoRII	CCWGG	3 cut(s)	422, 627, 691
EcoT38I	GRGCYC	2 cut(s)	786, 1006
EgeI	GGCGCC	1 cut(s)	331
EheI	GGCGCC	1 cut(s)	331
FaeI	CATG	7 cut(s)	88, 512, 763, 782, 804, 1189, 1326
FalI	AAGNNNNNCTT	2 cut(s)	1119, 1151
FatI	CATG	7 cut(s)	84, 508, 759, 778, 800, 1185, 1322
FauNDI	CATATG	1 cut(s)	1078
FbaI	TGATCA	2 cut(s)	102, 433
FokI	GGATG	5 cut(s)	227, 439, 447, 563, 1387
FriOI	GRGCYC	2 cut(s)	786, 1006
FspBI	CTAG	6 cut(s)	27, 65, 911, 1023, 1229, 1341
GlaI	GCGC	3 cut(s)	331, 996, 1206
GsuI	CTGGAG	2 cut(s)	561, 944
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	231
HgaI	GACGC	2 cut(s)	428, 1346
HhaI	GCGC	3 cut(s)	332, 997, 1207
Hin1I	GRCGYC	2 cut(s)	330, 420
Hin1II	CATG	7 cut(s)	88, 512, 763, 782, 804, 1189, 1326
Hin6I	GCGC	3 cut(s)	330, 995, 1205
HinP1I	GCGC	3 cut(s)	330, 995, 1205
HincII	GTYRAC	1 cut(s)	1261
HindII	GTYRAC	1 cut(s)	1261
HindIII	AAGCTT	3 cut(s)	170, 311, 981
HinfI	GANTC	7 cut(s)	32, 197, 470, 658, 919, 1241, 1460
HpaI	GTTAAC	1 cut(s)	1261
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	2 cut(s)	1261, 1331
Hpy188III	TCNNGA	6 cut(s)	27, 128, 525, 752, 923, 1010
Hpy8I	GTNNAC	2 cut(s)	1261, 1331
HpyAV	CCTTC	3 cut(s)	51, 585, 709
HpyCH4III	ACNGT	2 cut(s)	797, 1265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	980, 1001
HpyF3I	CTNAG	7 cut(s)	183, 192, 225, 342, 356, 1315, 1350
Hsp92I	GRCGYC	2 cut(s)	330, 420
Hsp92II	CATG	7 cut(s)	88, 512, 763, 782, 804, 1189, 1326
HspAI	GCGC	3 cut(s)	330, 995, 1205
KasI	GGCGCC	1 cut(s)	329
Ksp22I	TGATCA	2 cut(s)	102, 433
KspAI	GTTAAC	1 cut(s)	1261
Kzo9I	GATC	5 cut(s)	59, 102, 433, 695, 1272
LguI	GCTCTTC	1 cut(s)	1011
LmnI	GCTCC	2 cut(s)	245, 1210
LweI	GCATC	2 cut(s)	469, 870
MaeI	CTAG	6 cut(s)	27, 65, 911, 1023, 1229, 1341
MaeIII	GTNAC	4 cut(s)	202, 616, 743, 856
MalI	GATC	5 cut(s)	61, 104, 435, 697, 1274
MbiI	CCGCTC	1 cut(s)	1074
MboI	GATC	5 cut(s)	59, 102, 433, 695, 1272
MboII	GAAGA	5 cut(s)	431, 889, 998, 1355, 1442
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	3 cut(s)	59, 695, 1272
MhlI	GDGCHC	2 cut(s)	786, 1006
Mly113I	GGCGCC	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	4 cut(s)	488, 496, 737, 1122
MseI	TTAA	9 cut(s)	21, 174, 564, 704, 894, 960, 978, 1178, 1260
MslI	CAYNNNNRTG	2 cut(s)	878, 1296
MspCI	CTTAAG	1 cut(s)	173
MspR9I	CCNGG	3 cut(s)	424, 629, 693
MunI	CAATTG	1 cut(s)	413
Mva1269I	GAATGC	2 cut(s)	1024, 1487
MvaI	CCWGG	3 cut(s)	424, 629, 693
MwoI	GCNNNNNNNGC	2 cut(s)	980, 1001
NarI	GGCGCC	1 cut(s)	330
NdeI	CATATG	1 cut(s)	1078
NdeII	GATC	5 cut(s)	59, 102, 433, 695, 1272
NlaIII	CATG	7 cut(s)	88, 512, 763, 782, 804, 1189, 1326
NlaIV	GGNNCC	3 cut(s)	331, 610, 697
NmuCI	GTSAC	2 cut(s)	616, 743
NspI	RCATGY	2 cut(s)	512, 804
NspV	TTCGAA	1 cut(s)	833
PciI	ACATGT	2 cut(s)	508, 800
PciSI	GCTCTTC	1 cut(s)	1011
PctI	GAATGC	2 cut(s)	1024, 1487
PfeI	GAWTC	6 cut(s)	32, 197, 658, 919, 1241, 1460
PflMI	CCANNNNNTGG	1 cut(s)	1201
PleI	GAGTC	1 cut(s)	478
PluTI	GGCGCC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	478
PscI	ACATGT	2 cut(s)	508, 800
PshBI	ATTAAT	1 cut(s)	564
Psp6I	CCWGG	3 cut(s)	422, 627, 691
PspEI	GGTNACC	1 cut(s)	743
PspGI	CCWGG	3 cut(s)	422, 627, 691
PspN4I	GGNNCC	3 cut(s)	331, 610, 697
PspPI	GGNCC	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	3 cut(s)	59, 695, 1272
RsaI	GTAC	4 cut(s)	150, 262, 799, 1345
RsaNI	GTAC	4 cut(s)	149, 261, 798, 1344
RseI	CAYNNNNRTG	2 cut(s)	878, 1296
SapI	GCTCTTC	1 cut(s)	1011
SaqAI	TTAA	9 cut(s)	21, 174, 564, 704, 894, 960, 978, 1178, 1260
Sau3AI	GATC	5 cut(s)	59, 102, 433, 695, 1272
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	3 cut(s)	424, 629, 693
SduI	GDGCHC	2 cut(s)	786, 1006
SfaNI	GCATC	2 cut(s)	469, 870
SfoI	GGCGCC	1 cut(s)	331
SfuI	TTCGAA	1 cut(s)	833
SmiMI	CAYNNNNRTG	2 cut(s)	878, 1296
SmlI	CTYRAG	4 cut(s)	152, 173, 1010, 1111
SmoI	CTYRAG	4 cut(s)	152, 173, 1010, 1111
SsiI	CCGC	1 cut(s)	1072
SspDI	GGCGCC	1 cut(s)	329
SspMI	CTAG	6 cut(s)	27, 65, 911, 1023, 1229, 1341
StyD4I	CCNGG	3 cut(s)	422, 627, 691
TaaI	ACNGT	2 cut(s)	797, 1265
TaqI	TCGA	1 cut(s)	833
TatI	WGTACW	3 cut(s)	148, 260, 1343
TfiI	GAWTC	6 cut(s)	32, 197, 658, 919, 1241, 1460
Tru1I	TTAA	9 cut(s)	21, 174, 564, 704, 894, 960, 978, 1178, 1260
Tru9I	TTAA	9 cut(s)	21, 174, 564, 704, 894, 960, 978, 1178, 1260
TscAI	CASTG	3 cut(s)	331, 645, 1333
TseFI	GTSAC	2 cut(s)	616, 743
Tsp45I	GTSAC	2 cut(s)	616, 743
TspDTI	ATGAA	8 cut(s)	33, 101, 135, 1422, 1437, 1443, 1473, 1494
TspRI	CASTG	3 cut(s)	331, 645, 1333
Van91I	CCANNNNNTGG	1 cut(s)	1201
Vha464I	CTTAAG	1 cut(s)	173
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	3 cut(s)	73, 727, 1174
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	2 cut(s)	512, 804
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1295
XspI	CTAG	6 cut(s)	27, 65, 911, 1023, 1229, 1341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.