Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020121.1

Orthogroup ID

OG0005246

Physical Location & Seq

Genomic Coordinates Forward (+)

5439 .. 7896

Gene Structure 2458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020121.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

atggcgaatatccttggagttaattctagagattctgtgccttcatcagttgagcaaggatctctagctggaaatttcaattccatgaacaataatatagtgatcagagagcgtggttatgaacttcaagacttgcgacagcagattgtacttgaggaaactgaactgaagcttaagtctgctcagcgaactaaggaatcagttacacgcaaggatgataatgctaagggcctatacaaagatggagttggtaagtgcagtacaggatattctaatggtatgcagaaagaaccaaaagagccagataaaaagcttacaaaaatcagtggcgccttttccactcagctaactgcactaagcccacaagaagtagttgttgcagaaaaaaccccaacaatggaggacaatactcaattggacgccaggatgattgatcatcttcaaaaagaaaatcaagtgcatccaacagagtcgtgcattgtaaaattgcaaaatcctaatgataaacatgttgttggaatgtcgggaaatatacatactggagtgaaagatggtgctggcattaatgctaaacacatccagtctgatggaaggggtgctggcattaatgctaaacacatccagtctgatggaaggggtaagcagatgggttcctttgtcacaccaaaccaggctaaatcactggcactcctaaacaacacaaacctttcgaattgttttggtaatgcaagcgttacaggagatgacaacacgaagatgcagtcattggttaaaatggaggaaatgctagacaagaatctggaggaaacacaacagaataggcaaaggtgtgaaattaaagaacaaaatgctcttaaagcttatcgtaaagcgcagagggctcttcttgaggcgaatgctaggtatgatgttctttatcggaaaagggaactatattctgccgacttccgcgcatatgttattgacaatcccagtttcttatattcctcaaggcagaacgaacaagctggacttgggttggattacactaataacttgtctgaaaatgtgaatttaatacccatgtcaagccatcagaagccgcaggagcataatggttgcaatctagcagttattgattccaatatccaatgcgttaacggtgttcagatccccaattcctaccagcatttgagtggagaaaacattggctcagaaccatgcagtgaacctgacgctagtacatctgagacaatgcctcttctggggaataatggcacagatggagtttgctctccatccaatgaaccaaatggttcaacaaatgaagatgatgatatatattcattcaaaaatgaatctgctcaacccaacaatgaatgccatattgcagacaaccaaaaggagactgataatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3H1

Protein Analysis

466

Amino Acids

51.3

Weight (kDa)

5.32

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13680
fragaria_vesca	FvH4_7g21920 FvH4_7g21920 FvH4_7g21920 FvH4_7g21920 FvH4_7g21920
malus_domestica	MD01G1123800.v1.1 MD07G1193500.v1.1
prunus_persica	Prupe.2G231100_v2.0.a1 Prupe.2G231100_v2.0.a1 Prupe.2G231100_v2.0.a1 Prupe.2G231100_v2.0.a1
pyrus_communis	pycom01g15030 pycom07g18260
rosa_chinensis	RchiOBHm_Chr1g0366221
rosa_laevigata	RLG00000019775 RLG00000027362
rosa_multiflora	Rmu_co8487329.1_g000001 Rmu_sc0003736.1_g000001 Rmu_sc0009109.1_g000005 Rmu_sc0020121.1_g000003
rosa_rugosa	Rorug01G0328000
rosa_samantha	Rh1AG336100 Rh1BG297500 Rh1CG313400 Rh1DG329200 Rh6AG107900
rosa_wichuraiana	Rw1G029810 Rw6G009290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	329
AccII	CGCG	1 cut(s)	951
AciI	CCGC	2 cut(s)	949, 1082
AclWI	GGATC	2 cut(s)	67, 1144
AcsI	RAATTY	2 cut(s)	73, 1051
AcuI	CTGAAG	1 cut(s)	188
AcyI	GRCGYC	2 cut(s)	330, 420
AfaI	GTAC	3 cut(s)	150, 262, 1222
AfiI	CCNNNNNNNGG	2 cut(s)	397, 1244
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	508
AgsI	TTSAA	5 cut(s)	79, 128, 443, 1299, 1330
AjnI	CCWGG	2 cut(s)	422, 669
AluBI	AGCT	6 cut(s)	68, 172, 313, 346, 860, 1007
AluI	AGCT	6 cut(s)	68, 172, 313, 346, 860, 1007
Alw26I	GTCTC	2 cut(s)	1223, 1379
AlwI	GGATC	2 cut(s)	67, 1144
AoxI	GGCC	1 cut(s)	229
ApoI	RAATTY	2 cut(s)	73, 1051
ArsI	GACNNNNNNTTYG	2 cut(s)	746, 778
AseI	ATTAAT	2 cut(s)	564, 606
AspLEI	GCGC	3 cut(s)	332, 874, 953
AspS9I	GGNCC	1 cut(s)	229
AsuII	TTCGAA	1 cut(s)	710
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	883
BccI	CCATC	8 cut(s)	236, 545, 581, 623, 640, 1080, 1256, 1285
BciT130I	CCWGG	2 cut(s)	424, 671
BclI	TGATCA	2 cut(s)	102, 433
BcoDI	GTCTC	2 cut(s)	1223, 1379
BfaI	CTAG	6 cut(s)	27, 65, 788, 900, 1106, 1218
BfoI	RGCGCY	1 cut(s)	333
BfrI	CTTAAG	1 cut(s)	173
BisI	GCNGC	1 cut(s)	1082
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	1083
Bme1390I	CCNGG	2 cut(s)	424, 671
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	331, 652
BmrFI	CCNGG	2 cut(s)	424, 671
BmrI	ACTGGG	1 cut(s)	966
BmsI	GCATC	2 cut(s)	469, 747
BmuI	ACTGGG	1 cut(s)	966
BpmI	CTGGAG	2 cut(s)	561, 821
Bpu10I	CCTNAGC	1 cut(s)	225
Bpu1102I	GCTNAGC	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	710
BpuEI	CTTGAG	3 cut(s)	173, 908, 973
BsaHI	GRCGYC	2 cut(s)	330, 420
BsaJI	CCNNGG	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	672, 702
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 1244
Bse1I	ACTGG	5 cut(s)	544, 580, 622, 687, 972
BseBI	CCWGG	2 cut(s)	424, 671
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	6 cut(s)	220, 432, 460, 576, 618, 1277
BseLI	CCNNNNNNNGG	2 cut(s)	397, 1244
BseMII	CTCAG	4 cut(s)	197, 356, 1206, 1218
BseNI	ACTGG	5 cut(s)	544, 580, 622, 687, 972
BsgI	GTGCAG	2 cut(s)	277, 336
Bsh1236I	CGCG	1 cut(s)	951
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	397, 1244
BsmAI	GTCTC	2 cut(s)	1223, 1379
BsmI	GAATGC	2 cut(s)	901, 1364
BsnI	GGCC	1 cut(s)	231
Bsp119I	TTCGAA	1 cut(s)	710
Bsp1286I	GDGCHC	1 cut(s)	883
Bsp143I	GATC	4 cut(s)	59, 102, 433, 1149
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	2 cut(s)	949, 1082
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	4 cut(s)	196, 355, 1205, 1219
BspFNI	CGCG	1 cut(s)	951
BspLI	GGNNCC	2 cut(s)	331, 652
BspPI	GGATC	2 cut(s)	67, 1144
BspQI	GCTCTTC	1 cut(s)	888
BspT104I	TTCGAA	1 cut(s)	710
BspT107I	GGYRCC	1 cut(s)	329
BspTI	CTTAAG	1 cut(s)	173
BsrI	ACTGG	5 cut(s)	544, 580, 622, 687, 972
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	4 cut(s)	59, 102, 433, 1149
BssNI	GRCGYC	2 cut(s)	330, 420
BssT1I	CCWWGG	1 cut(s)	13
Bst2UI	CCWGG	2 cut(s)	424, 671
Bst4CI	ACNGT	1 cut(s)	1142
Bst6I	CTCTTC	2 cut(s)	888, 1245
BstACI	GRCGYC	2 cut(s)	330, 420
BstAFI	CTTAAG	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	710
BstC8I	GCNNGC	3 cut(s)	559, 601, 730
BstDEI	CTNAG	7 cut(s)	183, 192, 225, 342, 356, 1192, 1227
BstF5I	GGATG	6 cut(s)	220, 432, 460, 576, 618, 1277
BstFNI	CGCG	1 cut(s)	951
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	3 cut(s)	332, 874, 953
BstKTI	GATC	4 cut(s)	62, 105, 436, 1152
BstMAI	GTCTC	2 cut(s)	1223, 1379
BstMBI	GATC	4 cut(s)	59, 102, 433, 1149
BstMWI	GCNNNNNNNGC	3 cut(s)	857, 878, 1087
BstNI	CCWGG	2 cut(s)	424, 671
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	2 cut(s)	422, 669
BstUI	CGCG	1 cut(s)	951
BstX2I	RGATCY	2 cut(s)	59, 1149
BstXI	CCANNNNNNTGG	2 cut(s)	587, 629
BstYI	RGATCY	2 cut(s)	59, 1149
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	6 cut(s)	220, 432, 460, 576, 618, 1277
BtsI	GCAGTG	1 cut(s)	1210
BtsIMutI	CAGTG	3 cut(s)	331, 680, 1210
Cac8I	GCNNGC	3 cut(s)	559, 601, 730
CfoI	GCGC	3 cut(s)	332, 874, 953
Cfr13I	GGNCC	1 cut(s)	229
CseI	GACGC	2 cut(s)	428, 1223
Csp6I	GTAC	3 cut(s)	149, 261, 1221
CviAII	CATG	4 cut(s)	85, 509, 1063, 1200
CviQI	GTAC	3 cut(s)	149, 261, 1221
DdeI	CTNAG	7 cut(s)	183, 192, 225, 342, 356, 1192, 1227
DinI	GGCGCC	1 cut(s)	331
DpnI	GATC	4 cut(s)	61, 104, 435, 1151
DpnII	GATC	4 cut(s)	59, 102, 433, 1149
Eam1104I	CTCTTC	2 cut(s)	888, 1245
EarI	CTCTTC	2 cut(s)	888, 1245
Eco130I	CCWWGG	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	883
Eco57I	CTGAAG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	422, 669
EcoT14I	CCWWGG	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	883
EgeI	GGCGCC	1 cut(s)	331
EheI	GGCGCC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	4 cut(s)	88, 512, 1066, 1203
FalI	AAGNNNNNCTT	2 cut(s)	996, 1028
FatI	CATG	4 cut(s)	84, 508, 1062, 1199
FauNDI	CATATG	1 cut(s)	955
FbaI	TGATCA	2 cut(s)	102, 433
Fnu4HI	GCNGC	1 cut(s)	1082
FokI	GGATG	6 cut(s)	227, 439, 447, 563, 605, 1264
FriOI	GRGCYC	1 cut(s)	883
Fsp4HI	GCNGC	1 cut(s)	1082
FspBI	CTAG	6 cut(s)	27, 65, 788, 900, 1106, 1218
GlaI	GCGC	3 cut(s)	331, 873, 952
GluI	GCNGC	1 cut(s)	1082
GsuI	CTGGAG	2 cut(s)	561, 821
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	231
HgaI	GACGC	2 cut(s)	428, 1223
HhaI	GCGC	3 cut(s)	332, 874, 953
Hin1I	GRCGYC	2 cut(s)	330, 420
Hin1II	CATG	4 cut(s)	88, 512, 1066, 1203
Hin6I	GCGC	3 cut(s)	330, 872, 951
HinP1I	GCGC	3 cut(s)	330, 872, 951
HincII	GTYRAC	1 cut(s)	1138
HindII	GTYRAC	1 cut(s)	1138
HindIII	AAGCTT	3 cut(s)	170, 311, 858
HinfI	GANTC	6 cut(s)	32, 197, 470, 796, 1118, 1337
HpaI	GTTAAC	1 cut(s)	1138
Hpy166II	GTNNAC	2 cut(s)	1138, 1208
Hpy188I	TCNGA	9 cut(s)	107, 586, 628, 921, 1042, 1077, 1149, 1195, 1228
Hpy188III	TCNNGA	5 cut(s)	27, 128, 525, 800, 887
Hpy8I	GTNNAC	2 cut(s)	1138, 1208
HpyAV	CCTTC	3 cut(s)	51, 585, 627
HpyCH4III	ACNGT	1 cut(s)	1142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	857, 878, 1087
HpyF3I	CTNAG	7 cut(s)	183, 192, 225, 342, 356, 1192, 1227
Hsp92I	GRCGYC	2 cut(s)	330, 420
Hsp92II	CATG	4 cut(s)	88, 512, 1066, 1203
HspAI	GCGC	3 cut(s)	330, 872, 951
KasI	GGCGCC	1 cut(s)	329
Ksp22I	TGATCA	2 cut(s)	102, 433
KspAI	GTTAAC	1 cut(s)	1138
Kzo9I	GATC	4 cut(s)	59, 102, 433, 1149
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	1 cut(s)	1087
LweI	GCATC	2 cut(s)	469, 747
MaeI	CTAG	6 cut(s)	27, 65, 788, 900, 1106, 1218
MaeIII	GTNAC	3 cut(s)	202, 658, 733
MalI	GATC	4 cut(s)	61, 104, 435, 1151
MboI	GATC	4 cut(s)	59, 102, 433, 1149
MboII	GAAGA	5 cut(s)	431, 766, 875, 1232, 1319
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	2 cut(s)	59, 1149
MhlI	GDGCHC	1 cut(s)	883
MluCI	AATT	9 cut(s)	22, 73, 79, 413, 485, 712, 834, 1051, 1156
Mly113I	GGCGCC	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	3 cut(s)	488, 496, 999
MnlI	CCTC	8 cut(s)	148, 394, 772, 796, 870, 883, 997, 1248
MseI	TTAA	9 cut(s)	21, 174, 564, 606, 771, 837, 855, 1055, 1137
MslI	CAYNNNNRTG	2 cut(s)	755, 1173
MspCI	CTTAAG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	424, 671
MunI	CAATTG	1 cut(s)	413
Mva1269I	GAATGC	2 cut(s)	901, 1364
MvaI	CCWGG	2 cut(s)	424, 671
MvnI	CGCG	1 cut(s)	951
MwoI	GCNNNNNNNGC	3 cut(s)	857, 878, 1087
NarI	GGCGCC	1 cut(s)	330
NdeI	CATATG	1 cut(s)	955
NdeII	GATC	4 cut(s)	59, 102, 433, 1149
NlaIII	CATG	4 cut(s)	88, 512, 1066, 1203
NlaIV	GGNNCC	2 cut(s)	331, 652
NmuCI	GTSAC	1 cut(s)	658
NspI	RCATGY	1 cut(s)	512
NspV	TTCGAA	1 cut(s)	710
PciI	ACATGT	1 cut(s)	508
PciSI	GCTCTTC	1 cut(s)	888
PctI	GAATGC	2 cut(s)	901, 1364
PfeI	GAWTC	5 cut(s)	32, 197, 796, 1118, 1337
PkrI	GCNGC	1 cut(s)	1083
PleI	GAGTC	1 cut(s)	478
PluTI	GGCGCC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	478
PscI	ACATGT	1 cut(s)	508
PshBI	ATTAAT	2 cut(s)	564, 606
Psp6I	CCWGG	2 cut(s)	422, 669
PspGI	CCWGG	2 cut(s)	422, 669
PspN4I	GGNNCC	2 cut(s)	331, 652
PspPI	GGNCC	1 cut(s)	229
PsuI	RGATCY	2 cut(s)	59, 1149
RsaI	GTAC	3 cut(s)	150, 262, 1222
RsaNI	GTAC	3 cut(s)	149, 261, 1221
RseI	CAYNNNNRTG	2 cut(s)	755, 1173
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	9 cut(s)	21, 174, 564, 606, 771, 837, 855, 1055, 1137
SatI	GCNGC	1 cut(s)	1082
Sau3AI	GATC	4 cut(s)	59, 102, 433, 1149
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	2 cut(s)	424, 671
SduI	GDGCHC	1 cut(s)	883
SfaNI	GCATC	2 cut(s)	469, 747
SfoI	GGCGCC	1 cut(s)	331
SfuI	TTCGAA	1 cut(s)	710
SmiMI	CAYNNNNRTG	2 cut(s)	755, 1173
SmlI	CTYRAG	4 cut(s)	152, 173, 887, 988
SmoI	CTYRAG	4 cut(s)	152, 173, 887, 988
Sse9I	AATT	9 cut(s)	22, 73, 79, 413, 485, 712, 834, 1051, 1156
SsiI	CCGC	2 cut(s)	949, 1082
SspDI	GGCGCC	1 cut(s)	329
SspMI	CTAG	6 cut(s)	27, 65, 788, 900, 1106, 1218
StyD4I	CCNGG	2 cut(s)	422, 669
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	1142
TaqI	TCGA	1 cut(s)	710
TasI	AATT	9 cut(s)	22, 73, 79, 413, 485, 712, 834, 1051, 1156
TatI	WGTACW	3 cut(s)	148, 260, 1220
TauI	GCSGC	1 cut(s)	1084
TfiI	GAWTC	5 cut(s)	32, 197, 796, 1118, 1337
Tru1I	TTAA	9 cut(s)	21, 174, 564, 606, 771, 837, 855, 1055, 1137
Tru9I	TTAA	9 cut(s)	21, 174, 564, 606, 771, 837, 855, 1055, 1137
TscAI	CASTG	3 cut(s)	331, 687, 1210
TseFI	GTSAC	1 cut(s)	658
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	8 cut(s)	33, 101, 135, 1299, 1314, 1320, 1350, 1371
TspRI	CASTG	3 cut(s)	331, 687, 1210
Vha464I	CTTAAG	1 cut(s)	173
VspI	ATTAAT	2 cut(s)	564, 606
XapI	RAATTY	2 cut(s)	73, 1051
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	1 cut(s)	512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1172
XspI	CTAG	6 cut(s)	27, 65, 788, 900, 1106, 1218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.