Rh1BG297500

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0005246
Physical Location & Seq
Reverse (-)
43255630 .. 43260712
5083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG297500.1

Sequence Viewer

Length: 3609 bp
ATGAATAACCTGAAACTCTACTCGGAGGTCTCTCTGAACCTCCAGTTACAGTCCCCACAAGAAGAGCTCATCCTCTTCTCCGCCTTCGACATCGAGCAGAGCCGCCTCTTCTTCGCCTCCTCCGCCAACAACATCTACGCCACCCACCTCTCCTCTCTCCAGCATGAGAGGGCGTGGAGCAAGACCTCGATTCCCGCGCAGGTCACTCGGATCGAGCTGGATGAGGCCGAGGACTCCATCACTTCGTTTGTTTACCTCATGGAGAAAGAGGCACTCTTGGTTGGGACCAGTAAAGGCCTTCTGCTGCTGCATAGTGTGGATGACAATGCCTCGCAAGTCGTCGGCGGCGTCGACGGCGGCGTGAGGTGTGTTTCGGCTAGTCCCGATGGAGATGTTCTGGCTATAATTACCGGGACTGGGCAGATACTGGTGATGACTCTGGATTGGGACTTGCTGTATGAGACTGCACTTGAGGATGTTGCTGACGATGGCAGCCGCATATGTGATCTAATATTGTCGAATATTGAAAGCCCCATTGCTTGGCGCGGTGATGGGAAATACTTTGTCACACTAAGCGAGGCGTTGGATTCTACCTCTTTGCTTAAGAGGCTTAAGGTTTGGGAGCGACATTCAGGGGCGTTACATGCTGTTTCGGAATCAAAGTCGTTCATGGGTTCAGTGGTGGACTGGATGCCAAGTGGGGCGAAAGTTGCAGCTGTTTATGATAGGAAAGCGCAAAATGAGTGTCCTTCAATAGTGTTTTACGAGAGGAATGGGTTAGAAAGAAGCCAGTTTAGCATTAATGAGCAAGTTAATGCAACCGTAGAATTTCTCAAGTGGAATTGCAGTTCAGATCTTCTTGCCGCCGTTGTTAGATGTGATAACTATGACTGTGTCAAGATTTGGTATTTCAGTAACAATCACTGGTACTTAAAATCTGAAATTAGATACCCAAGACACGACGGAGTGAGGTCTGTCTGGAATCCAACAAGGCCACTGCAGTTAACATGTTGGACTCTTGGCGGCCAGATTACATCTTACAACTTCATATGGAATTCAGCCGTGATGGAGGACTCAACTGCATTAGTAATTGATGACTCCAAGATACTTGTGACCCCCCTTTCTTTATACTTAATGCCACCTCCTATGTATTTATTCAGCCTTAAATTCTCGAGTGTTGTCCGGGACTTTGCCTTCTACTCCAAGAATTCTAAGAACTGCTTGGCTGCTTTTCTATCAGATGGCTGTTTATGTATTGTAGAGCTTCCCGCAACTGATACATGGGAAGATCTAGAAGGCAAAGAGTTCCTTGTTGAAGCGTCCAGTTCTGATTCACCATTTGGTTCAGTTTTGCATCTAATATGGTTGGACCCCCATAAGATTCTTGCTGTTTCTCACCATGGGTTCAGTCATAGTAATTACTTGCCTCAGACTTCACTTGGTGAGGAAGACCTTGGTTTTTATTTGCAGGAAATTGAGCTTACATGCTCTGAGGATCATGTCCCAGGTTTATTGACATGCTCAGGATGGAATGCTAAAGTCTCCAGTCGAAACTCTCTAGAAGAGACCATTATTGGAATTGCTCCTAATCCTGCTTCAAAAGGTTCAGCATTTGTTCAATTTGATGGTGGAAAGGTTTATGAGTATGTTCCAAAGTTAGGCATCTCCCGAGGGGCTTCAAAACATGATTGGAGCTTCTCATCAACTTGCCCTTGGATGAGTGTGGTTCTAGTTGGAGACAGTGTGTCATCGAAACCTCTGCTTTTCGGACTTGATGACAGTTGTAGGCTGCACGTCAGTGGAAAGATAATATGCAACAACTGCAGCAGTTTTTCATTCTACTCAAATTTGGCTGATCAGGTGATCACACATTTAATTTTGGCAACTAAGCAGGATTTGCTTTTTGTTGTTGAAATATCAGATGTATTGCAAAAAGAACTTGAGATAAAACATGAGAACTTCATCCATGCTGGTAAGAAGAAAAGAGGAGAAAATAGAAACTTTATAAACATATGGGAAAGAGGTGCCAAAGTTCTTGGTGTCGTTCATGGAGATGAAGCCGCTGTCCTGTTGCAACCGTCTCGTGGCAATCTAGAATGCATTTACCCAAGAAAGTTGGTCCTGGCCTCTATTTGCAATGCATTGGTCCAAAGGCGTTTTAGAGATGCACTTCTCATGGTGAGGCGTCAGAGGATAGATTTCAATGTCCTTGTTGACTATTGTGGTTGGCAGGTGTTTCTTCAATCAGCTGCAGAATTTGTCAAGCAGGTCAATAATTTGAACCACATGACTGAGTTTGTTTGTGCCATAAAGAATGAAGATACTACAGAGACGCTATATAAGGAATTTATTTCTTCACCCTCTCCTAAAGAAGCTAAAGATGTGCAATCGCACGACTCCAAGGGTTTTGATTCCAATAACAAGGTATCTTCTGTGCTGCTGGCCATTAGGAAGGCTCTTGAGGATCAATTACCGGAAACTCCTGCAAGGGAGCTTTGCATTCTGACCACTCTTGCTCGTAGTGACCCCCCTGCACTTGATGAGGCTTTAGAGAGAATAAAAGTTATCCGTGAGGCAGAATTGTCAGGTTCCAATGACCAAAGGAGAATGTCTTACCCCACTGCTGAAGAGGCTTTGAAGCATCTCCTATGGTTATCTGATTCGGAATCTGTTTATGAGGCAGCTTTGGGCCTTTATGATTTGAACCTTGCAGCTATGGTGGCATTGAATTCTCAGCGGGACCCTAAAGAATTCCTTCCTTTTCTTCAAGAATTGGAAAGTATGCCTGATACTTTAATGCGCTATAACATTGACCTTCGGCTGCAGAGGTTTGAGAAGGCCCTCAAGCACATTGTTTCTGCAGGAGACACTTGCTATGCAGATTCTATGAACCTGATGAAGAAAAATCCTCAACTCTTTCCACTGGGACTTCAGCTGATTGCTGATCCTAACAAGAAGAGGCAAGTTCTCAACGCTTGGGGAGATCATCTTAGCAGTGAAAAATGCTTTGAGGATGCTGCTACCACTTATTTGTGCTGCTCCAGTTTTGAGAAGGCTTTGAAGTCGTACCGTTCTTGTGGTAATTGGAGTAAGGTGCTTACAGTTGCCGGGCTTCTAAAACTGGGTGAAGATGAGATAATGCAACTGGCTCATGAGCTATGTGAAGAATTGCAAGCTCTTGGTAAACCAAAGGAAGCTGCCAAAATTGCGCTGGAGTATTGTGGTGAAATTAACAATGGGATGAGTTTGTTGATTAGCGCAAGGGACTGGGAGGAAGCTTTAAGAGTTGCTTTAATGCACAATAGACAGGATTTGATCTCTGAGGTGAAGAATGCAGCTTTGGAATGTGCAGTCTTGCTGATTGGTGAATATGATGAAGGTTTGGAGAAAGTAGGGAAGTACTTGGCTCGCTACTTAGCTTTAAGACAAAGAAGGTTACTCCTTGCTGCAAAAGTCCAGTCAGAGGAACGGTCAATGAACGATCTTGATGATGATACTGCTTCAGAAGCTAGCAGTAATTTCAGTGGAATGAGTGCTTACACCACTGGGTATGTCTTTTACATACTTTTGTTCATACAGGTCTACCTCTTTAATTCATTGGGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IKI3

Protein Analysis

1202

Amino Acids

134.47

Weight (kDa)

5.15

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_ELP1_1st PF04762 1 - 160 8.1e-28 ELP1 first N-terminal beta-propeller
Beta-prop_ELP1_1st PF04762 176 - 329 1.8e-44 ELP1 first N-terminal beta-propeller
Beta-prop_ELP1_2nd PF23797 363 - 678 5.8e-49 ELP1 N-terminal second beta-propeller
A-sol_ELP1 PF23925 704 - 925 4.2e-48 ELP1 alpha-solenoid
TPR_ELP1 PF23878 934 - 1095 2.7e-25 ELP1 TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2006
AarI CACCTGC 1 cut(s) 2221
Acc36I ACCTGC 3 cut(s) 190, 2221, 2257
AccB1I GGYRCC 1 cut(s) 2024
AccB7I CCANNNNNTGG 1 cut(s) 540
AccI GTMKAC 2 cut(s) 351, 3582
AccII CGCG 2 cut(s) 197, 546
AclWI GGATC 4 cut(s) 218, 1503, 2472, 2939
AcoI YGGCCR 2 cut(s) 1024, 2442
AcsI RAATTY 9 cut(s) 827, 1054, 1166, 1207, 1846, 2255, 2345, 2728, 2750
AcuI CTGAAG 3 cut(s) 2646, 2915, 3486
AcyI GRCGYC 2 cut(s) 348, 2185
AdeI CACNNNGTG 1 cut(s) 1442
AfaI GTAC 3 cut(s) 929, 3068, 3401
AfiI CCNNNNNNNGG 5 cut(s) 417, 540, 1658, 2084, 3463
AflII CTTAAG 2 cut(s) 602, 611
AflIII ACRYGT 1 cut(s) 1007
AhdI GACNNNNNGTC 1 cut(s) 1744
AjiI CACGTC 1 cut(s) 1795
AjnI CCWGG 2 cut(s) 1504, 2121
AjuI GAANNNNNNNTTGG 2 cut(s) 3323, 3355
AleI CACNNNNGTG 1 cut(s) 1797
AloI GAACNNNNNNTCC 2 cut(s) 832, 864
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 8 cut(s) 34, 455, 1546, 1559, 1731, 2085, 2324, 2859
AlwI GGATC 4 cut(s) 218, 1503, 2472, 2939
AlwNI CAGNNNCTG 1 cut(s) 427
Ama87I CYCGRG 2 cut(s) 1171, 1668
AoxI GGCC 8 cut(s) 225, 295, 992, 1024, 2124, 2442, 2689, 2838
ApoI RAATTY 9 cut(s) 827, 1054, 1166, 1207, 1846, 2255, 2345, 2728, 2750
ArsI GACNNNNNNTTYG 4 cut(s) 730, 762, 3443, 3475
AseI ATTAAT 1 cut(s) 801
Asp700I GAANNNNTTC 1 cut(s) 2754
AspLEI GCGC 6 cut(s) 199, 546, 736, 2802, 3211, 3260
AspS9I GGNCC 7 cut(s) 285, 1369, 2119, 2146, 2689, 2740, 2839
AsuC2I CCSGG 3 cut(s) 412, 1184, 3109
AsuNHI GCTAGC 1 cut(s) 3509
AvaI CYCGRG 2 cut(s) 1171, 1668
AvaII GGWCC 5 cut(s) 285, 1369, 2119, 2146, 2740
BalI TGGCCA 1 cut(s) 2444
BanI GGYRCC 1 cut(s) 2024
BanII GRGCYC 1 cut(s) 69
BauI CACGAG 1 cut(s) 2082
BbsI GAAGAC 1 cut(s) 1455
Bbv12I GWGCWC 1 cut(s) 69
BccI CCATC 8 cut(s) 245, 380, 482, 545, 1060, 1235, 1521, 1619
BceAI ACGGC 3 cut(s) 370, 851, 1046
BcgI CGANNNNNNTGC 6 cut(s) 188, 222, 1741, 1775, 2063, 2097
BciT130I CCWGG 2 cut(s) 1506, 2123
BclI TGATCA 2 cut(s) 1855, 1863
BcnI CCSGG 3 cut(s) 412, 1184, 3109
BcoDI GTCTC 8 cut(s) 34, 455, 1546, 1559, 1731, 2085, 2324, 2859
BfaI CTAG 6 cut(s) 378, 1292, 1559, 1730, 2093, 3510
BfmI CTRYAG 6 cut(s) 998, 1822, 2250, 2325, 2822, 2859
BfrI CTTAAG 2 cut(s) 602, 611
BfuAI ACCTGC 3 cut(s) 190, 2221, 2257
BglII AGATCT 2 cut(s) 853, 1288
BmcAI AGTACT 1 cut(s) 3401
Bme1390I CCNGG 5 cut(s) 412, 1184, 1506, 2123, 3109
Bme18I GGWCC 5 cut(s) 285, 1369, 2119, 2146, 2740
BmeRI GACNNNNNGTC 1 cut(s) 1744
BmeT110I CYCGRG 2 cut(s) 1171, 1668
BmgBI CACGTC 1 cut(s) 1795
BmgT120I GGNCC 7 cut(s) 285, 1369, 2119, 2146, 2689, 2740, 2839
BmiI GGNNCC 6 cut(s) 286, 1371, 2026, 2590, 2741, 2742
BmrFI CCNGG 5 cut(s) 412, 1184, 1506, 2123, 3109
BmrI ACTGGG 5 cut(s) 426, 2933, 3131, 3277, 3555
BmsI GCATC 6 cut(s) 681, 1363, 1671, 2155, 2650, 3004
BmtI GCTAGC 1 cut(s) 3513
BmuI ACTGGG 5 cut(s) 426, 2933, 3131, 3277, 3555
BpiI GAAGAC 1 cut(s) 1455
BpmI CTGGAG 5 cut(s) 26, 143, 1528, 3025, 3233
Bpu10I CCTNAGC 1 cut(s) 1522
BpuEI CTTGAG 5 cut(s) 491, 818, 1961, 2480, 2828
BpuMI CCSGG 3 cut(s) 412, 1184, 3109
BsaHI GRCGYC 2 cut(s) 348, 2185
BsaI GGTCTC 2 cut(s) 34, 1559
BsaJI CCNNGG 7 cut(s) 228, 1399, 1453, 1504, 1669, 1712, 2400
BsaWI WCCGGW 1 cut(s) 2473
BsaXI ACNNNNNCTCC 2 cut(s) 1728, 1758
Bsc4I CCNNNNNNNGG 5 cut(s) 417, 540, 1658, 2084, 3463
Bse3DI GCAATG 2 cut(s) 534, 2143
BseBI CCWGG 2 cut(s) 1506, 2123
BseDI CCNNGG 7 cut(s) 228, 1399, 1453, 1504, 1669, 1712, 2400
BseLI CCNNNNNNNGG 5 cut(s) 417, 540, 1658, 2084, 3463
BseMI GCAATG 2 cut(s) 534, 2143
BseMII CTCAG 6 cut(s) 1442, 1482, 1536, 2283, 2747, 3312
BseRI GAGGAG 3 cut(s) 109, 142, 2001
BsgI GTGCAG 4 cut(s) 450, 1775, 2517, 3369
Bsh1236I CGCG 2 cut(s) 197, 546
BshFI GGCC 8 cut(s) 227, 297, 994, 1026, 2126, 2444, 2691, 2840
BshNI GGYRCC 1 cut(s) 2024
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 2 cut(s) 1171, 1668
BsiSI CCGG 4 cut(s) 411, 1183, 2474, 3108
BslI CCNNNNNNNGG 5 cut(s) 417, 540, 1658, 2084, 3463
BsmAI GTCTC 8 cut(s) 34, 455, 1546, 1559, 1731, 2085, 2324, 2859
BsmBI CGTCTC 2 cut(s) 2085, 2324
BsmI GAATGC 4 cut(s) 1537, 2102, 2499, 3337
BsnI GGCC 8 cut(s) 227, 297, 994, 1026, 2126, 2444, 2691, 2840
Bso31I GGTCTC 2 cut(s) 34, 1559
BsoBI CYCGRG 2 cut(s) 1171, 1668
Bsp1286I GDGCHC 1 cut(s) 69
Bsp19I CCATGG 1 cut(s) 1399
BspANI GGCC 8 cut(s) 227, 297, 994, 1026, 2126, 2444, 2691, 2840
BspCNI CTCAG 6 cut(s) 1441, 1483, 1535, 2284, 2746, 3313
BspFNI CGCG 2 cut(s) 197, 546
BspHI TCATGA 1 cut(s) 3151
BspLI GGNNCC 6 cut(s) 286, 1371, 2026, 2590, 2741, 2742
BspMAI CTGCAG 5 cut(s) 1002, 1826, 2254, 2826, 2863
BspMI ACCTGC 3 cut(s) 190, 2221, 2257
BspOI GCTAGC 1 cut(s) 3513
BspPI GGATC 4 cut(s) 218, 1503, 2472, 2939
BspQI GCTCTTC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 2024
BspTI CTTAAG 2 cut(s) 602, 611
BspTNI GGTCTC 2 cut(s) 34, 1559
BsrDI GCAATG 2 cut(s) 534, 2143
BssECI CCNNGG 7 cut(s) 228, 1399, 1453, 1504, 1669, 1712, 2400
BssNI GRCGYC 2 cut(s) 348, 2185
BssSI CACGAG 1 cut(s) 2082
BssT1I CCWWGG 4 cut(s) 1399, 1453, 1712, 2400
Bst2BI CACGAG 1 cut(s) 2082
Bst2UI CCWGG 2 cut(s) 1506, 2123
Bst4CI ACNGT 9 cut(s) 51, 823, 893, 1742, 1781, 2079, 3071, 3103, 3471
Bst6I CTCTTC 6 cut(s) 57, 80, 113, 1557, 2622, 2951
BstACI GRCGYC 2 cut(s) 348, 2185
BstAFI CTTAAG 2 cut(s) 602, 611
BstAPI GCANNNNNTGC 2 cut(s) 1821, 1897
BstC8I GCNNGC 4 cut(s) 2442, 3174, 3409, 3511
BstDSI CCRYGG 1 cut(s) 1399
BstFNI CGCG 2 cut(s) 197, 546
BstHHI GCGC 6 cut(s) 199, 546, 736, 2802, 3211, 3260
BstMAI GTCTC 8 cut(s) 34, 455, 1546, 1559, 1731, 2085, 2324, 2859
BstNI CCWGG 2 cut(s) 1506, 2123
BstNSI RCATGY 4 cut(s) 647, 1011, 1488, 1521
BstSCI CCNGG 5 cut(s) 410, 1182, 1504, 2121, 3107
BstSFI CTRYAG 6 cut(s) 998, 1822, 2250, 2325, 2822, 2859
BstUI CGCG 2 cut(s) 197, 546
BstV2I GAAGAC 1 cut(s) 1455
BstX2I RGATCY 2 cut(s) 853, 1288
BstYI RGATCY 2 cut(s) 853, 1288
BsuRI GGCC 8 cut(s) 227, 297, 994, 1026, 2126, 2444, 2691, 2840
BtgI CCRYGG 1 cut(s) 1399
BtrI CACGTC 1 cut(s) 1795
BtsI GCAGTG 3 cut(s) 995, 2619, 3001
BveI ACCTGC 3 cut(s) 190, 2221, 2257
Cac8I GCNNGC 4 cut(s) 2442, 3174, 3409, 3511
CaiI CAGNNNCTG 1 cut(s) 427
CciI TCATGA 1 cut(s) 3151
CfoI GCGC 6 cut(s) 199, 546, 736, 2802, 3211, 3260
Cfr13I GGNCC 7 cut(s) 285, 1369, 2119, 2146, 2689, 2740, 2839
CseI GACGC 4 cut(s) 337, 1308, 2174, 2341
Csp6I GTAC 3 cut(s) 928, 3067, 3400
CviQI GTAC 3 cut(s) 928, 3067, 3400
DraIII CACNNNGTG 1 cut(s) 1442
DriI GACNNNNNGTC 1 cut(s) 1744
EaeI YGGCCR 2 cut(s) 1024, 2442
Eam1104I CTCTTC 6 cut(s) 57, 80, 113, 1557, 2622, 2951
Eam1105I GACNNNNNGTC 1 cut(s) 1744
EarI CTCTTC 6 cut(s) 57, 80, 113, 1557, 2622, 2951
EciI GGCGGA 2 cut(s) 70, 112
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 4 cut(s) 1399, 1453, 1712, 2400
Eco147I AGGCCT 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 2 cut(s) 34, 1559
Eco47I GGWCC 5 cut(s) 285, 1369, 2119, 2146, 2740
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 3 cut(s) 2646, 2915, 3486
Eco88I CYCGRG 2 cut(s) 1171, 1668
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 2 cut(s) 2740, 2839
EcoRI GAATTC 4 cut(s) 1054, 1207, 2728, 2750
EcoRII CCWGG 2 cut(s) 1504, 2121
EcoT14I CCWWGG 4 cut(s) 1399, 1453, 1712, 2400
EcoT22I ATGCAT 2 cut(s) 2102, 2143
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 4 cut(s) 1399, 1453, 1712, 2400
Esp3I CGTCTC 2 cut(s) 2085, 2324
FalI AAGNNNNNCTT 8 cut(s) 1205, 1237, 1293, 1325, 2739, 2771, 3274, 3306
FauI CCCGC 3 cut(s) 202, 1276, 2730
FauNDI CATATG 3 cut(s) 500, 1049, 2012
FbaI TGATCA 2 cut(s) 1855, 1863
FblI GTMKAC 2 cut(s) 351, 3582
FriOI GRGCYC 1 cut(s) 69
FspBI CTAG 6 cut(s) 378, 1292, 1559, 1730, 2093, 3510
GlaI GCGC 6 cut(s) 198, 545, 735, 2801, 3210, 3259
GsuI CTGGAG 5 cut(s) 26, 143, 1528, 3025, 3233
HaeIII GGCC 8 cut(s) 227, 297, 994, 1026, 2126, 2444, 2691, 2840
HapII CCGG 4 cut(s) 411, 1183, 2474, 3108
HgaI GACGC 4 cut(s) 337, 1308, 2174, 2341
HhaI GCGC 6 cut(s) 199, 546, 736, 2802, 3211, 3260
Hin1I GRCGYC 2 cut(s) 348, 2185
Hin6I GCGC 6 cut(s) 197, 544, 734, 2800, 3209, 3258
HinP1I GCGC 6 cut(s) 197, 544, 734, 2800, 3209, 3258
HincII GTYRAC 3 cut(s) 352, 1005, 2215
HindII GTYRAC 3 cut(s) 352, 1005, 2215
HindIII AAGCTT 1 cut(s) 3276
HpaI GTTAAC 1 cut(s) 1005
HpaII CCGG 4 cut(s) 411, 1183, 2474, 3108
Hpy166II GTNNAC 7 cut(s) 253, 352, 685, 1005, 2215, 3185, 3583
Hpy8I GTNNAC 7 cut(s) 253, 352, 685, 1005, 2215, 3185, 3583
Hpy99I CGWCG 4 cut(s) 344, 353, 356, 965
HpyCH4III ACNGT 9 cut(s) 51, 823, 893, 1742, 1781, 2079, 3071, 3103, 3471
HpyCH4IV ACGT 1 cut(s) 1794
HpySE526I ACGT 1 cut(s) 1794
Hsp92I GRCGYC 2 cut(s) 348, 2185
HspAI GCGC 6 cut(s) 197, 544, 734, 2800, 3209, 3258
KflI GGGWCCC 1 cut(s) 2740
Ksp22I TGATCA 2 cut(s) 1855, 1863
KspAI GTTAAC 1 cut(s) 1005
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 6 cut(s) 177, 622, 1588, 1692, 2491, 3044
LweI GCATC 6 cut(s) 681, 1363, 1671, 2155, 2650, 3004
MaeI CTAG 6 cut(s) 378, 1292, 1559, 1730, 2093, 3510
MaeII ACGT 1 cut(s) 1794
MaeIII GTNAC 8 cut(s) 45, 202, 565, 639, 914, 1111, 2522, 3435
MflI RGATCY 2 cut(s) 853, 1288
MhlI GDGCHC 1 cut(s) 69
MlsI TGGCCA 1 cut(s) 2444
MluNI TGGCCA 1 cut(s) 2444
MlyI GAGTC 6 cut(s) 227, 430, 1009, 1067, 1091, 2390
MmeI TCCRAC 5 cut(s) 564, 992, 1010, 1347, 1714
Mox20I TGGCCA 1 cut(s) 2444
Mph1103I ATGCAT 2 cut(s) 2102, 2143
MroXI GAANNNNTTC 1 cut(s) 2754
MscI TGGCCA 1 cut(s) 2444
MslI CAYNNNNRTG 2 cut(s) 1797, 2052
Msp20I TGGCCA 1 cut(s) 2444
MspA1I CMGCKG 5 cut(s) 716, 2063, 2249, 2737, 2935
MspCI CTTAAG 2 cut(s) 602, 611
MspI CCGG 4 cut(s) 411, 1183, 2474, 3108
MspR9I CCNGG 5 cut(s) 412, 1184, 1506, 2123, 3109
Mva1269I GAATGC 4 cut(s) 1537, 2102, 2499, 3337
MvaI CCWGG 2 cut(s) 1506, 2123
MvnI CGCG 2 cut(s) 197, 546
NciI CCSGG 3 cut(s) 412, 1184, 3109
NcoI CCATGG 1 cut(s) 1399
NdeI CATATG 3 cut(s) 500, 1049, 2012
NheI GCTAGC 1 cut(s) 3509
NlaIV GGNNCC 6 cut(s) 286, 1371, 2026, 2590, 2741, 2742
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 4 cut(s) 202, 565, 1111, 2522
NsiI ATGCAT 2 cut(s) 2102, 2143
NspI RCATGY 4 cut(s) 647, 1011, 1488, 1521
OliI CACNNNNGTG 1 cut(s) 1797
PaeR7I CTCGAG 1 cut(s) 1171
PagI TCATGA 1 cut(s) 3151
PaqCI CACCTGC 1 cut(s) 2221
PceI AGGCCT 1 cut(s) 297
PciI ACATGT 1 cut(s) 1007
PciSI GCTCTTC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 3 cut(s) 345, 348, 357
PctI GAATGC 4 cut(s) 1537, 2102, 2499, 3337
PdmI GAANNNNTTC 1 cut(s) 2754
PflFI GACNNNGTC 1 cut(s) 893
PflMI CCANNNNNTGG 1 cut(s) 540
PfoI TCCNGGA 1 cut(s) 1182
PleI GAGTC 6 cut(s) 227, 430, 1009, 1067, 1091, 2390
PpsI GAGTC 6 cut(s) 227, 430, 1009, 1067, 1091, 2390
PpuMI RGGWCCY 1 cut(s) 2740
PscI ACATGT 1 cut(s) 1007
PshBI ATTAAT 1 cut(s) 801
PsiI TTATAA 1 cut(s) 2006
Psp124BI GAGCTC 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 2740
Psp6I CCWGG 2 cut(s) 1504, 2121
PspGI CCWGG 2 cut(s) 1504, 2121
PspN4I GGNNCC 6 cut(s) 286, 1371, 2026, 2590, 2741, 2742
PspPI GGNCC 7 cut(s) 285, 1369, 2119, 2146, 2689, 2740, 2839
PspPPI RGGWCCY 1 cut(s) 2740
PstI CTGCAG 5 cut(s) 1002, 1826, 2254, 2826, 2863
PstNI CAGNNNCTG 1 cut(s) 427
PsuI RGATCY 2 cut(s) 853, 1288
PsyI GACNNNGTC 1 cut(s) 893
PvuII CAGCTG 3 cut(s) 716, 2249, 2935
RsaI GTAC 3 cut(s) 929, 3068, 3401
RsaNI GTAC 3 cut(s) 928, 3067, 3400
RseI CAYNNNNRTG 2 cut(s) 1797, 2052
SacI GAGCTC 1 cut(s) 69
SalI GTCGAC 1 cut(s) 350
SapI GCTCTTC 1 cut(s) 57
Sau96I GGNCC 7 cut(s) 285, 1369, 2119, 2146, 2689, 2740, 2839
ScaI AGTACT 1 cut(s) 3401
SchI GAGTC 6 cut(s) 227, 430, 1009, 1067, 1091, 2390
ScrFI CCNGG 5 cut(s) 412, 1184, 1506, 2123, 3109
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 6 cut(s) 681, 1363, 1671, 2155, 2650, 3004
SfcI CTRYAG 6 cut(s) 998, 1822, 2250, 2325, 2822, 2859
Sfr274I CTCGAG 1 cut(s) 1171
SgrDI CGTCGACG 1 cut(s) 350
SinI GGWCC 5 cut(s) 285, 1369, 2119, 2146, 2740
SlaI CTCGAG 1 cut(s) 1171
SmiMI CAYNNNNRTG 2 cut(s) 1797, 2052
SmlI CTYRAG 8 cut(s) 470, 602, 611, 833, 1171, 1940, 2459, 2843
SmoI CTYRAG 8 cut(s) 470, 602, 611, 833, 1171, 1940, 2459, 2843
SseBI AGGCCT 1 cut(s) 297
SspI AATATT 2 cut(s) 513, 523
SspMI CTAG 6 cut(s) 378, 1292, 1559, 1730, 2093, 3510
SstI GAGCTC 1 cut(s) 69
StuI AGGCCT 1 cut(s) 297
StyD4I CCNGG 5 cut(s) 410, 1182, 1504, 2121, 3107
StyI CCWWGG 4 cut(s) 1399, 1453, 1712, 2400
TaaI ACNGT 9 cut(s) 51, 823, 893, 1742, 1781, 2079, 3071, 3103, 3471
TaiI ACGT 1 cut(s) 1797
TaqI TCGA 9 cut(s) 87, 93, 188, 213, 351, 518, 1172, 1549, 1751
TatI WGTACW 1 cut(s) 3399
TauI GCSGC 7 cut(s) 105, 348, 360, 498, 866, 1026, 2063
TseFI GTSAC 4 cut(s) 202, 565, 1111, 2522
Tsp45I GTSAC 4 cut(s) 202, 565, 1111, 2522
TspGWI ACGGA 2 cut(s) 978, 2558
Tth111I GACNNNGTC 1 cut(s) 893
Van91I CCANNNNNTGG 1 cut(s) 540
Vha464I CTTAAG 2 cut(s) 602, 611
VpaK11BI GGWCC 5 cut(s) 285, 1369, 2119, 2146, 2740
VspI ATTAAT 1 cut(s) 801
XapI RAATTY 9 cut(s) 827, 1054, 1166, 1207, 1846, 2255, 2345, 2728, 2750
XbaI TCTAGA 3 cut(s) 1291, 1558, 2092
XceI RCATGY 4 cut(s) 647, 1011, 1488, 1521
XcmI CCANNNNNNNNNTGG 1 cut(s) 3208
XhoI CTCGAG 1 cut(s) 1171
XmiI GTMKAC 2 cut(s) 351, 3582
XmnI GAANNNNTTC 1 cut(s) 2754
XspI CTAG 6 cut(s) 378, 1292, 1559, 1730, 2093, 3510
ZrmI AGTACT 1 cut(s) 3401
Zsp2I ATGCAT 2 cut(s) 2102, 2143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.