RLG00000027362

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005246
Physical Location & Seq
Forward (+)
10921381 .. 10925795
4415 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027362

Sequence Viewer

Length: 3963 bp
ATGAATAATCTGAAACTCTACTCGGAGGTGTCTCTGAACCTCCAGTTACAGTCCCCAGAAGAAGAGCTCATCCTCTTCTCCGCCTTCGACATCGAGCAGAGCCGCCTCTTCTTCGCCTCCTCCGCCAACAACATCTACGCCACCCACCTCTCCTCTCTCCAGCATGAGAGGGCGTGGAGCAAGACCTCGATTCCCGCGCAGGTCACTCGGATCGAGCTGGATGAGGCCGAGGACTTCATCACTTCGTTTGTTTACCTCATGGAGAAAGAGGCACTCTTGGTTGGGACCAGTAAAGGCCTTCTGCTGCTGCATAGTGTGGATGACAATGCCTCGCAAGTCGTCGGCGGCGTCGACGGCGGTGTGAGGTGTGTTTCGGCTAGTCCCGATGGAGATGTTCTGGCTATAATTACCGGGACTGGGCAGATACTGGTGATGACTCTGGATTGGGATTTGCTTTACGAGACTGCACTTGAGGATGTTGCTGAAGATGGCAGCCGCATATGTGATCTAATATTGTCGAATATTGAAAGCCCCATTGCTTGGCGCGGTGATGGGAAATACTTTGTCACAGTAAGCAATGCTTTGGATTCTACCTCTTTGCTTAAGAGGCTTAAGGTTTGGGAGCGACATTCAGGGGCGTTACATGCTGTTTCGGAATCAAAGTCGTTCATGGGATCAGTGGTGGACTGGATGCCAAGTGGGGCGAAAGTTGCAGCTGTTTATGATAGGAAAGCGCAAAATGAGTGTCCTTCAATAGTGTTTTACGAGAGGAATGGGTTAGAAAGAAGCCAGTTTAGCATTAATGAGCAAGCTAATGCAACCGTAGAATTTCTCAAGTGGAATTGCAGTTCAGATCTTCTTGCCGCCGTTGTCAGATGTGATAACTATGACTGTGTCAAGATTTGGTATTTCAGTAACAATCACTGTTACTTAAAATCTGAAATTAGATACCCAAGACACGACGGAGTGAGGTTTGTCTGGAATCCAACAAGGCCACTGCAGTTAATATGTTGGACTCTTGGCGGCCAGATTACATCTTACAACTTCATATGGAATTCAGCTGTGATGGAGGACTCAACTGCATTAGTAATTGATGACTCCAAGATACTTGTAACCCCCCTTTCTTTATACTTAATGCCACCTCCTATGTATTTATTCAGCCTTAAATTCTCGAGTGTTGTCCGGGACTTTGCCTTCTACTCCAAGAATTCTAAGAACTGCTTGGCTGCTTTTCTATCAGATGGCTGTTTATGTATTGTAGAGCTTCCCGCAACTGATACATGGGAAGATCTAGAAGGCAAAGAGTTACTTGTTGAAGCGTCCAGTTCTGATTCACCATTTGGTTCAGTTTTGCATCTAATATGGTTGGACGCCCATAAGATTCTTGCTGTTTCTCACCATGGGTTCAGTCATAGTAATTACTTGCCTCAGACTTCACTTGGTGAGGAAGACCTTGGTTTTTATTTGCAGGAAATTGAGCTTACATGCTCTGAGGATCATGTCCCAGGTTTATTGACATGCTCAGGATGGAATGCTAAAGTCTCCAGTCGAAACCCTCTAGAAGAGACCATTATTGGAATTGCTCCTAATTCTGCTTCAAAAGGTTCGGCATTTGTTCAATTTGATGGTGGAAAGGTTTATGAGTATGTTCCAAAGTTAGGCATCTCCCGAGTGGCTTCAAAACTTGATTGGAGCTTCTCATCAACTTGCCCTTGGATGAGTGTGGTTCTAGTTGGAGACAGTGTGTCATCGAAACCTCTGCTTTTCGGACTTGATGACAGTTGTAGGTTGCACGTCAGTGGAAAGATAATATGCAACAACTGCAGCAGTTTTTCATTCTACTCAAATTTGGCTGATCAGGTGATCACACATTTAATTTTGGCAACTAAGCAGGATTTGCTTTTTGTTGTTGAAATATCAGATGTATTGCAAAAAGAACTTGAGATAAAACATGAGAACTTCATCCATGCTGGTAAGAAGAAAAGAGAAGAAAATAGAAACTTTATAAACATATGGGAAAGAGGTGCCAAAGTTGTTGGTGTCGTTCATGGAGATGAAGCCGCTGTCCTGTTGCAACCATCTCGTGGCAATCTAGAATGCATTTACCCAAGAAAGTTGGTCCTGGCCTCTATTTGCAATGCATTGGTCCAAAGGCGTTTTAGAGATGCACTTCTCATGGTGAGGCGTCAGAGGATAGATTTCAATGTCCTTGTTGACTATTGTGGTTGGCAGGTGTTTCTTCAATCAGCTGCAGAATTTGTCAAGCAGGTCAATAATTTGAACCACATGACTGAGTTTGTTTGTGCCATAAAGAATGAAGATACTACAGAGACACTATATAAGGAATTTATTTGTTCACCCTCTCCTAAAGAAGCTAAAGATGTACAATCGCACAACTCCAAGGGTTTTGATTCCAATAACAAGGTATCTTCTGTGCTGCTGGCCATTAGGAAGGCTCTTGAGGATCAATTACCGGAAACTCCTGCAAGGGAGCTTTGCATTCTGACCACTCTTGCTCGTAGTGACCCCCCTGCTCTTGATGAGGCTTTAGAGAGAATAAAAGTTATCCGTGACGCAGAATTGTCAGTTTCCAATGACCAAAGGAGAATGTCTTACCCCACTGCTGAAGAGGCTTTGAAGCATCTCCTATGGTTATCTGATTCGGAATCTGTTTATGAGGCAGCTTTGGGCCTTTATGATTTGAACCTTGCAGCTATGGTGGCATTGAATTCTCAGCAGGACCCTAAAGAATTCCTTCCTTTTCTTCAAGAATTGGAAAGTATGCCTGATACTTTAATGCGCTATAACATTGACCTTCGGCTGCAGAGGTTTGAGAAGGCCCTCAAGCACATTGTTTCTGCAGGAGACACTTGCTATGCAGATTCTATGAACCTGATGAAGAAAAATCCTCAACTCTTTCCACTGGGACTTCAGCTGATTGCTGATCCTAACAAGAAGAGGCAAGTTCTCGATGCTTGGGGAGATCATCTTAGCAATGAAAAATGCTTTGAGGATGCTGCTACCACTTATTTGTGCTGCTCCAGTTTTGAGAAGGCTTTGAAGTCGTACCGTTCTTGTGGTAATTGGAGTAAGGTGCTTACAGTTGCCGGGCTTCTAAAACTGGGTAATGATGAGATAATGCAACTGGCTCATGAGCTATGTGAAGAATTGCAAGCTCTTGGTAAACCAAAGGAAGCTGCCAAAATTGCGCTGGAGTATTGTGGTGAAATTAACAATGGGATGAGTTTGTTGATTAGCGCAAGGGACTGGGAGGAAGCTTTAAGAGTTGCTTTAATGTACAATAGACAGGATTTGATCTCTGAGGTGAAGAATGCAGCTTTGGAATGTGCAGTCTTGCTGATTGGTGAATACGAGGAAGGTTTGGAGAAAGTAGGGAAGTACTTGGCTCGCTACTTAGCTTTAAGACAAAGAAGGTTACTCCTTGCCGCAAAAGTCCAGTCAGAGGAACGGTCAATGAACGATCTTGATGATGATACTGCTTCAGAAGCTAGCAGTAATTTCAGTGGAATGAGTGCTTACACCACTGGGACTAGGAACAGCTCTGCCACTTCCATGAGATCAAGTGCAGCTAGCAGGGCAAGAGATGCCAGGCGTCAGAGAAAGAAAGGAAAAATCCGTGCTGGCAGTCCTGGTGAGGAGATCGCTCTTGTAGATCACTTGAAGGGGATGCCTCCAACAAGTGAAGCACTCCATGAGCTAAAATCTTTGTTGCATACGCTTACGATGCTTGGCGAGGTTGAAACTGCAAGAAAGCTGCAGAAGGCTGGAGAGAACTTTCAACTGTCGCATATGGCAGCAGTCAAACTAGCCGATGATACAGTATCCACTGATGGCATAGATGAGCATACACAGACTTTGGAGCATTATACACAAAGTATTAGAGATGTAGTGCAAAACTCCGAGGCTTTCTTTTGGCGTTGTAAAGTATTTCTTTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IKI3

Protein Analysis

1321

Amino Acids

147.51

Weight (kDa)

5.32

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_ELP1_1st PF04762 1 - 159 2.5e-27 ELP1 first N-terminal beta-propeller
Beta-prop_ELP1_1st PF04762 176 - 329 3.1e-43 ELP1 first N-terminal beta-propeller
Beta-prop_ELP1_2nd PF23797 363 - 679 1.4e-48 ELP1 N-terminal second beta-propeller
A-sol_ELP1 PF23925 704 - 925 1.1e-47 ELP1 alpha-solenoid
TPR_ELP1 PF23878 934 - 1095 5.9e-26 ELP1 TPR domain
HB_ELP1 PF23936 1107 - 1264 3.6e-14 ELP1 three-helix bundle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2006
AarI CACCTGC 1 cut(s) 2221
Acc36I ACCTGC 3 cut(s) 190, 2221, 2257
AccB1I GGYRCC 1 cut(s) 2024
AccB7I CCANNNNNTGG 2 cut(s) 540, 2084
AccI GTMKAC 1 cut(s) 351
AccII CGCG 2 cut(s) 197, 546
AclWI GGATC 5 cut(s) 218, 682, 1503, 2472, 2939
AcoI YGGCCR 2 cut(s) 1024, 2442
AcsI RAATTY 9 cut(s) 827, 1054, 1166, 1207, 1846, 2255, 2345, 2728, 2750
AcuI CTGAAG 4 cut(s) 504, 2646, 2915, 3486
AcyI GRCGYC 4 cut(s) 348, 1371, 2185, 3613
AdeI CACNNNGTG 1 cut(s) 1442
AfaI GTAC 4 cut(s) 2385, 3068, 3299, 3401
AfiI CCNNNNNNNGG 5 cut(s) 417, 540, 1658, 2084, 3463
AflII CTTAAG 2 cut(s) 602, 611
AhdI GACNNNNNGTC 1 cut(s) 1744
AjiI CACGTC 1 cut(s) 1795
AjnI CCWGG 4 cut(s) 1504, 2121, 3608, 3649
AjuI GAANNNNNNNTTGG 2 cut(s) 3323, 3355
AleI CACNNNNGTG 1 cut(s) 1797
AloI GAACNNNNNNTCC 2 cut(s) 832, 864
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 7 cut(s) 36, 455, 1546, 1559, 1731, 2324, 2859
AlwI GGATC 5 cut(s) 218, 682, 1503, 2472, 2939
AlwNI CAGNNNCTG 1 cut(s) 427
Ama87I CYCGRG 2 cut(s) 1171, 1668
AoxI GGCC 8 cut(s) 225, 295, 992, 1024, 2124, 2442, 2689, 2838
ApoI RAATTY 9 cut(s) 827, 1054, 1166, 1207, 1846, 2255, 2345, 2728, 2750
ArsI GACNNNNNNTTYG 4 cut(s) 730, 762, 3443, 3475
AseI ATTAAT 1 cut(s) 801
Asp700I GAANNNNTTC 1 cut(s) 2754
AspLEI GCGC 6 cut(s) 199, 546, 736, 2802, 3211, 3260
AspS9I GGNCC 6 cut(s) 285, 2119, 2146, 2689, 2740, 2839
AsuC2I CCSGG 3 cut(s) 412, 1184, 3109
AsuNHI GCTAGC 2 cut(s) 3509, 3590
AvaI CYCGRG 2 cut(s) 1171, 1668
AvaII GGWCC 4 cut(s) 285, 2119, 2146, 2740
BalI TGGCCA 1 cut(s) 2444
BanI GGYRCC 1 cut(s) 2024
BanII GRGCYC 1 cut(s) 69
BauI CACGAG 1 cut(s) 2082
BbsI GAAGAC 1 cut(s) 1455
Bbv12I GWGCWC 1 cut(s) 69
BccI CCATC 9 cut(s) 380, 482, 545, 1060, 1235, 1521, 1619, 2086, 3845
BceAI ACGGC 2 cut(s) 370, 851
BcgI CGANNNNNNTGC 6 cut(s) 188, 222, 1741, 1775, 2063, 2097
BciT130I CCWGG 4 cut(s) 1506, 2123, 3610, 3651
BciVI GTATCC 1 cut(s) 3853
BclI TGATCA 2 cut(s) 1855, 1863
BcnI CCSGG 3 cut(s) 412, 1184, 3109
BcoDI GTCTC 7 cut(s) 36, 455, 1546, 1559, 1731, 2324, 2859
BfaI CTAG 9 cut(s) 378, 1292, 1559, 1730, 2093, 3510, 3552, 3591, 3827
BfmI CTRYAG 7 cut(s) 998, 1822, 2250, 2325, 2822, 2859, 3776
BfrI CTTAAG 2 cut(s) 602, 611
BfuAI ACCTGC 3 cut(s) 190, 2221, 2257
BfuI GTATCC 1 cut(s) 3853
BglII AGATCT 2 cut(s) 853, 1288
BmcAI AGTACT 1 cut(s) 3401
Bme1390I CCNGG 7 cut(s) 412, 1184, 1506, 2123, 3109, 3610, 3651
Bme18I GGWCC 4 cut(s) 285, 2119, 2146, 2740
BmeRI GACNNNNNGTC 1 cut(s) 1744
BmeT110I CYCGRG 2 cut(s) 1171, 1668
BmgBI CACGTC 1 cut(s) 1795
BmgT120I GGNCC 6 cut(s) 285, 2119, 2146, 2689, 2740, 2839
BmiI GGNNCC 3 cut(s) 286, 2026, 2742
BmrFI CCNGG 7 cut(s) 412, 1184, 1506, 2123, 3109, 3610, 3651
BmrI ACTGGG 5 cut(s) 426, 2933, 3131, 3277, 3555
BmtI GCTAGC 2 cut(s) 3513, 3594
BmuI ACTGGG 5 cut(s) 426, 2933, 3131, 3277, 3555
BpiI GAAGAC 1 cut(s) 1455
BpmI CTGGAG 6 cut(s) 26, 143, 1528, 3025, 3233, 3807
Bpu10I CCTNAGC 1 cut(s) 1522
BpuEI CTTGAG 5 cut(s) 491, 818, 1961, 2480, 2828
BpuMI CCSGG 3 cut(s) 412, 1184, 3109
BsaHI GRCGYC 4 cut(s) 348, 1371, 2185, 3613
BsaI GGTCTC 1 cut(s) 1559
BsaJI CCNNGG 7 cut(s) 228, 1399, 1453, 1504, 1712, 2400, 3921
BsaWI WCCGGW 1 cut(s) 2473
BsaXI ACNNNNNCTCC 2 cut(s) 1728, 1758
Bsc4I CCNNNNNNNGG 5 cut(s) 417, 540, 1658, 2084, 3463
Bse3DI GCAATG 4 cut(s) 534, 583, 2143, 3001
BseBI CCWGG 4 cut(s) 1506, 2123, 3610, 3651
BseDI CCNNGG 7 cut(s) 228, 1399, 1453, 1504, 1712, 2400, 3921
BseLI CCNNNNNNNGG 5 cut(s) 417, 540, 1658, 2084, 3463
BseMI GCAATG 4 cut(s) 534, 583, 2143, 3001
BseMII CTCAG 6 cut(s) 1442, 1482, 1536, 2283, 2747, 3312
BseRI GAGGAG 3 cut(s) 109, 142, 3671
BsgI GTGCAG 3 cut(s) 450, 3369, 3606
Bsh1236I CGCG 2 cut(s) 197, 546
BshFI GGCC 8 cut(s) 227, 297, 994, 1026, 2126, 2444, 2691, 2840
BshNI GGYRCC 1 cut(s) 2024
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 2 cut(s) 1171, 1668
BsiSI CCGG 4 cut(s) 411, 1183, 2474, 3108
BslFI GGGAC 9 cut(s) 37, 298, 366, 427, 1199, 1487, 2940, 3278, 3562
BslI CCNNNNNNNGG 5 cut(s) 417, 540, 1658, 2084, 3463
BsmAI GTCTC 7 cut(s) 36, 455, 1546, 1559, 1731, 2324, 2859
BsmFI GGGAC 9 cut(s) 37, 298, 366, 427, 1199, 1487, 2940, 3278, 3562
BsmI GAATGC 4 cut(s) 1537, 2102, 2499, 3337
BsnI GGCC 8 cut(s) 227, 297, 994, 1026, 2126, 2444, 2691, 2840
Bso31I GGTCTC 1 cut(s) 1559
BsoBI CYCGRG 2 cut(s) 1171, 1668
Bsp1286I GDGCHC 1 cut(s) 69
Bsp1407I TGTACA 2 cut(s) 2383, 3297
Bsp19I CCATGG 1 cut(s) 1399
BspANI GGCC 8 cut(s) 227, 297, 994, 1026, 2126, 2444, 2691, 2840
BspCNI CTCAG 6 cut(s) 1441, 1483, 1535, 2284, 2746, 3313
BspFNI CGCG 2 cut(s) 197, 546
BspHI TCATGA 1 cut(s) 3151
BspLI GGNNCC 3 cut(s) 286, 2026, 2742
BspMAI CTGCAG 6 cut(s) 1002, 1826, 2254, 2826, 2863, 3780
BspMI ACCTGC 3 cut(s) 190, 2221, 2257
BspOI GCTAGC 2 cut(s) 3513, 3594
BspPI GGATC 5 cut(s) 218, 682, 1503, 2472, 2939
BspQI GCTCTTC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 2024
BspTI CTTAAG 2 cut(s) 602, 611
BspTNI GGTCTC 1 cut(s) 1559
BsrDI GCAATG 4 cut(s) 534, 583, 2143, 3001
BsrGI TGTACA 2 cut(s) 2383, 3297
BssECI CCNNGG 7 cut(s) 228, 1399, 1453, 1504, 1712, 2400, 3921
BssNI GRCGYC 4 cut(s) 348, 1371, 2185, 3613
BssSI CACGAG 1 cut(s) 2082
BssT1I CCWWGG 4 cut(s) 1399, 1453, 1712, 2400
Bst2BI CACGAG 1 cut(s) 2082
Bst2UI CCWGG 4 cut(s) 1506, 2123, 3610, 3651
Bst6I CTCTTC 6 cut(s) 57, 80, 113, 1557, 2622, 2951
BstACI GRCGYC 4 cut(s) 348, 1371, 2185, 3613
BstAFI CTTAAG 2 cut(s) 602, 611
BstAPI GCANNNNNTGC 3 cut(s) 1821, 1897, 3605
BstAUI TGTACA 2 cut(s) 2383, 3297
BstC8I GCNNGC 7 cut(s) 810, 2442, 3174, 3409, 3511, 3592, 3643
BstDSI CCRYGG 1 cut(s) 1399
BstFNI CGCG 2 cut(s) 197, 546
BstHHI GCGC 6 cut(s) 199, 546, 736, 2802, 3211, 3260
BstMAI GTCTC 7 cut(s) 36, 455, 1546, 1559, 1731, 2324, 2859
BstNI CCWGG 4 cut(s) 1506, 2123, 3610, 3651
BstNSI RCATGY 3 cut(s) 647, 1488, 1521
BstSCI CCNGG 7 cut(s) 410, 1182, 1504, 2121, 3107, 3608, 3649
BstSFI CTRYAG 7 cut(s) 998, 1822, 2250, 2325, 2822, 2859, 3776
BstUI CGCG 2 cut(s) 197, 546
BstV2I GAAGAC 1 cut(s) 1455
BstX2I RGATCY 2 cut(s) 853, 1288
BstYI RGATCY 2 cut(s) 853, 1288
BsuI GTATCC 1 cut(s) 3853
BsuRI GGCC 8 cut(s) 227, 297, 994, 1026, 2126, 2444, 2691, 2840
BtgI CCRYGG 1 cut(s) 1399
BtrI CACGTC 1 cut(s) 1795
BtsI GCAGTG 2 cut(s) 995, 2619
BveI ACCTGC 3 cut(s) 190, 2221, 2257
Cac8I GCNNGC 7 cut(s) 810, 2442, 3174, 3409, 3511, 3592, 3643
CaiI CAGNNNCTG 1 cut(s) 427
CciI TCATGA 1 cut(s) 3151
CfoI GCGC 6 cut(s) 199, 546, 736, 2802, 3211, 3260
Cfr13I GGNCC 6 cut(s) 285, 2119, 2146, 2689, 2740, 2839
CseI GACGC 6 cut(s) 337, 1308, 1379, 2174, 2582, 3602
Csp6I GTAC 4 cut(s) 2384, 3067, 3298, 3400
CviQI GTAC 4 cut(s) 2384, 3067, 3298, 3400
DraIII CACNNNGTG 1 cut(s) 1442
DriI GACNNNNNGTC 1 cut(s) 1744
EaeI YGGCCR 2 cut(s) 1024, 2442
Eam1104I CTCTTC 6 cut(s) 57, 80, 113, 1557, 2622, 2951
Eam1105I GACNNNNNGTC 1 cut(s) 1744
EarI CTCTTC 6 cut(s) 57, 80, 113, 1557, 2622, 2951
EciI GGCGGA 2 cut(s) 70, 112
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 4 cut(s) 1399, 1453, 1712, 2400
Eco147I AGGCCT 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 1559
Eco47I GGWCC 4 cut(s) 285, 2119, 2146, 2740
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 4 cut(s) 504, 2646, 2915, 3486
Eco88I CYCGRG 2 cut(s) 1171, 1668
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 2 cut(s) 2740, 2839
EcoRI GAATTC 4 cut(s) 1054, 1207, 2728, 2750
EcoRII CCWGG 4 cut(s) 1504, 2121, 3608, 3649
EcoT14I CCWWGG 4 cut(s) 1399, 1453, 1712, 2400
EcoT22I ATGCAT 2 cut(s) 2102, 2143
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 4 cut(s) 1399, 1453, 1712, 2400
FaqI GGGAC 9 cut(s) 37, 298, 366, 427, 1199, 1487, 2940, 3278, 3562
FauI CCCGC 2 cut(s) 202, 1276
FauNDI CATATG 4 cut(s) 500, 1049, 2012, 3810
FbaI TGATCA 2 cut(s) 1855, 1863
FblI GTMKAC 1 cut(s) 351
FriOI GRGCYC 1 cut(s) 69
FspBI CTAG 9 cut(s) 378, 1292, 1559, 1730, 2093, 3510, 3552, 3591, 3827
GlaI GCGC 6 cut(s) 198, 545, 735, 2801, 3210, 3259
GsuI CTGGAG 6 cut(s) 26, 143, 1528, 3025, 3233, 3807
HaeIII GGCC 8 cut(s) 227, 297, 994, 1026, 2126, 2444, 2691, 2840
HapII CCGG 4 cut(s) 411, 1183, 2474, 3108
HgaI GACGC 6 cut(s) 337, 1308, 1379, 2174, 2582, 3602
HhaI GCGC 6 cut(s) 199, 546, 736, 2802, 3211, 3260
Hin1I GRCGYC 4 cut(s) 348, 1371, 2185, 3613
Hin6I GCGC 6 cut(s) 197, 544, 734, 2800, 3209, 3258
HinP1I GCGC 6 cut(s) 197, 544, 734, 2800, 3209, 3258
HincII GTYRAC 2 cut(s) 352, 2215
HindII GTYRAC 2 cut(s) 352, 2215
HindIII AAGCTT 1 cut(s) 3276
HpaII CCGG 4 cut(s) 411, 1183, 2474, 3108
Hpy166II GTNNAC 6 cut(s) 253, 352, 685, 2215, 2357, 3185
Hpy8I GTNNAC 6 cut(s) 253, 352, 685, 2215, 2357, 3185
Hpy99I CGWCG 4 cut(s) 344, 353, 356, 965
HpyCH4IV ACGT 1 cut(s) 1794
HpySE526I ACGT 1 cut(s) 1794
Hsp92I GRCGYC 4 cut(s) 348, 1371, 2185, 3613
HspAI GCGC 6 cut(s) 197, 544, 734, 2800, 3209, 3258
Ksp22I TGATCA 2 cut(s) 1855, 1863
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 7 cut(s) 177, 622, 1588, 1692, 2491, 3044, 3880
MaeI CTAG 9 cut(s) 378, 1292, 1559, 1730, 2093, 3510, 3552, 3591, 3827
MaeII ACGT 1 cut(s) 1794
MflI RGATCY 2 cut(s) 853, 1288
MhlI GDGCHC 1 cut(s) 69
MlsI TGGCCA 1 cut(s) 2444
MluNI TGGCCA 1 cut(s) 2444
MlyI GAGTC 4 cut(s) 430, 1009, 1067, 1091
MmeI TCCRAC 5 cut(s) 992, 1010, 1347, 1714, 3719
Mox20I TGGCCA 1 cut(s) 2444
Mph1103I ATGCAT 2 cut(s) 2102, 2143
MroXI GAANNNNTTC 1 cut(s) 2754
MscI TGGCCA 1 cut(s) 2444
MslI CAYNNNNRTG 3 cut(s) 1797, 2052, 3572
Msp20I TGGCCA 1 cut(s) 2444
MspA1I CMGCKG 5 cut(s) 716, 1061, 2063, 2249, 2935
MspCI CTTAAG 2 cut(s) 602, 611
MspI CCGG 4 cut(s) 411, 1183, 2474, 3108
MspR9I CCNGG 7 cut(s) 412, 1184, 1506, 2123, 3109, 3610, 3651
Mva1269I GAATGC 4 cut(s) 1537, 2102, 2499, 3337
MvaI CCWGG 4 cut(s) 1506, 2123, 3610, 3651
MvnI CGCG 2 cut(s) 197, 546
NciI CCSGG 3 cut(s) 412, 1184, 3109
NcoI CCATGG 1 cut(s) 1399
NdeI CATATG 4 cut(s) 500, 1049, 2012, 3810
NheI GCTAGC 2 cut(s) 3509, 3590
NlaIV GGNNCC 3 cut(s) 286, 2026, 2742
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 4 cut(s) 202, 565, 2522, 2570
NsiI ATGCAT 2 cut(s) 2102, 2143
NspI RCATGY 3 cut(s) 647, 1488, 1521
OliI CACNNNNGTG 1 cut(s) 1797
PaeR7I CTCGAG 1 cut(s) 1171
PagI TCATGA 1 cut(s) 3151
PaqCI CACCTGC 1 cut(s) 2221
PceI AGGCCT 1 cut(s) 297
PciSI GCTCTTC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 2 cut(s) 345, 348
PctI GAATGC 4 cut(s) 1537, 2102, 2499, 3337
PdmI GAANNNNTTC 1 cut(s) 2754
PflFI GACNNNGTC 1 cut(s) 893
PflMI CCANNNNNTGG 2 cut(s) 540, 2084
PfoI TCCNGGA 1 cut(s) 1182
PleI GAGTC 4 cut(s) 430, 1009, 1067, 1091
PpsI GAGTC 4 cut(s) 430, 1009, 1067, 1091
PpuMI RGGWCCY 1 cut(s) 2740
PshBI ATTAAT 1 cut(s) 801
PsiI TTATAA 1 cut(s) 2006
Psp124BI GAGCTC 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 2740
Psp6I CCWGG 4 cut(s) 1504, 2121, 3608, 3649
PspGI CCWGG 4 cut(s) 1504, 2121, 3608, 3649
PspN4I GGNNCC 3 cut(s) 286, 2026, 2742
PspPI GGNCC 6 cut(s) 285, 2119, 2146, 2689, 2740, 2839
PspPPI RGGWCCY 1 cut(s) 2740
PstI CTGCAG 6 cut(s) 1002, 1826, 2254, 2826, 2863, 3780
PstNI CAGNNNCTG 1 cut(s) 427
PsuI RGATCY 2 cut(s) 853, 1288
PsyI GACNNNGTC 1 cut(s) 893
PvuII CAGCTG 4 cut(s) 716, 1061, 2249, 2935
RsaI GTAC 4 cut(s) 2385, 3068, 3299, 3401
RsaNI GTAC 4 cut(s) 2384, 3067, 3298, 3400
RseI CAYNNNNRTG 3 cut(s) 1797, 2052, 3572
SacI GAGCTC 1 cut(s) 69
SalI GTCGAC 1 cut(s) 350
SapI GCTCTTC 1 cut(s) 57
Sau96I GGNCC 6 cut(s) 285, 2119, 2146, 2689, 2740, 2839
ScaI AGTACT 1 cut(s) 3401
SchI GAGTC 4 cut(s) 430, 1009, 1067, 1091
ScrFI CCNGG 7 cut(s) 412, 1184, 1506, 2123, 3109, 3610, 3651
SduI GDGCHC 1 cut(s) 69
SfcI CTRYAG 7 cut(s) 998, 1822, 2250, 2325, 2822, 2859, 3776
Sfr274I CTCGAG 1 cut(s) 1171
SgrDI CGTCGACG 1 cut(s) 350
SinI GGWCC 4 cut(s) 285, 2119, 2146, 2740
SlaI CTCGAG 1 cut(s) 1171
SmiMI CAYNNNNRTG 3 cut(s) 1797, 2052, 3572
SmlI CTYRAG 8 cut(s) 470, 602, 611, 833, 1171, 1940, 2459, 2843
SmoI CTYRAG 8 cut(s) 470, 602, 611, 833, 1171, 1940, 2459, 2843
SseBI AGGCCT 1 cut(s) 297
SspI AATATT 2 cut(s) 513, 523
SspMI CTAG 9 cut(s) 378, 1292, 1559, 1730, 2093, 3510, 3552, 3591, 3827
SstI GAGCTC 1 cut(s) 69
StuI AGGCCT 1 cut(s) 297
StyD4I CCNGG 7 cut(s) 410, 1182, 1504, 2121, 3107, 3608, 3649
StyI CCWWGG 4 cut(s) 1399, 1453, 1712, 2400
TaiI ACGT 1 cut(s) 1797
TatI WGTACW 3 cut(s) 2383, 3297, 3399
TauI GCSGC 7 cut(s) 105, 348, 498, 866, 1026, 2063, 3449
TseFI GTSAC 4 cut(s) 202, 565, 2522, 2570
Tsp45I GTSAC 4 cut(s) 202, 565, 2522, 2570
TspGWI ACGGA 3 cut(s) 978, 2558, 3626
Tth111I GACNNNGTC 1 cut(s) 893
Van91I CCANNNNNTGG 2 cut(s) 540, 2084
Vha464I CTTAAG 2 cut(s) 602, 611
VpaK11BI GGWCC 4 cut(s) 285, 2119, 2146, 2740
VspI ATTAAT 1 cut(s) 801
XapI RAATTY 9 cut(s) 827, 1054, 1166, 1207, 1846, 2255, 2345, 2728, 2750
XbaI TCTAGA 3 cut(s) 1291, 1558, 2092
XceI RCATGY 3 cut(s) 647, 1488, 1521
XcmI CCANNNNNNNNNTGG 1 cut(s) 3208
XhoI CTCGAG 1 cut(s) 1171
XmiI GTMKAC 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 2754
XspI CTAG 9 cut(s) 378, 1292, 1559, 1730, 2093, 3510, 3552, 3591, 3827
ZrmI AGTACT 1 cut(s) 3401
Zsp2I ATGCAT 2 cut(s) 2102, 2143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.