Rw6G009290

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0005246
Physical Location & Seq
Reverse (-)
15579701 .. 15586808
7108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G009290.1

Sequence Viewer

Length: 2868 bp
ATGAACCTCTCAAGCAGTCTTTTTCTCATGTTGTCCCCACCTTCCTTGGTTGGTTCCACGCCAATTTCTTTAATGGGTACTCTCTATCCACAGGAAAGTCCTGTTTTCTCTGTTGCACATTCCACTGCTACCAGTTTACTTGCTCCAGGGCCCATGCTGGTTCCACCAGTGAACAAATTCACCCAAGGGAATCAAGCGGGGAAGGCTGTATCTCCCGCAAGCTCTGCTGGTATTCAGTGCCAAATCTCCAAGCAACCTACTTCCCAGAAGAACAATGATGCGAACAGAGTACCATTAAAACGTGCTACACCTGGATGGCGTCCCCCATCTGCCCACTTGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAAATGATGACAGTCAGAGCGATTCTGAAGAAAAAGAGCTGAATACTAATGGAAAGCCACCCATTTCTTCACTTGCAAAACCCAACAAGTTGGGACGGCCTGCCAGGAATGTGAACAAAGTAATGCCCAACAAGTTTTCTATGAATCACACATTTATCACCTCAATGGCGAATATCCGTGGAGTTAATTCTAGAGATTCTGTGCCTTCATCAGTTGAGCAAGGATCTCTAGCTGGAAATTTCAATTCCATGAACAATAATATAGTGATCAGAGAGCGTGGATATGAACTTCAAGACTTGCGACAGCAGATTGTACTTGAGGAAACTGAACTGAAGCTTAAGTCTGCTCAGCGAACTAAGGAATCAGTTACATGCATGGATGATAATGCTAAGGGCCTATACAAAGATGGAACTGGTAAGTGCAGTACAGGATATTCTAATGGTATGCAGATAGAACCAAAAGAGCCAGATAAAAAGCTTACAAAAATCAGTGGCGCCTTTTCCACTCAGCTAACTGCACTAAGCCCACAAGAAGTAGTTGTTGCAGAAAAAACCCCAACAATGGAGGACAATACTCAATTGGACGCCAGGATGATTGATCATCTTCAAAAAGAAAATCAAGTGCATCCAACAGAGTCGTGCATTGTAAAATTGCAAAATCCTAATGATAAACATGTTGTTGGAATGTCGGGAAATATACATACTGGAGTGAAAGATGGTGCTGGCATTAATTCTAAACACATCCAGTCTGATGGAAGGGGTAAGCAGATGGGTTCCTTTGTCACACCAAACCAGGCTAAATCACTGAATAGTGTGGAGTTGAATCATACAAATACAAACAGAGGTCATTCAGAACCTGGATCCTTCTTAAACAATCCAACATCAGAAAAGAATTCTATGAGAAGTGGTGACCATCAGGAAACCATGTCCATTGACAAGAGACATGAGCCCTCATTCTACCGTACATGTCTGGCACTCCTAAACAACACAAACCTTTCGAATTGTTTTGGTAATGCAAGCGTTACAGGAGATGACAACACGAAGATGCAGTCATTGGTTAAAATGGAGGAAATGCTAGACAAGAATCTGGAGGAAACACAACAGCATAGGCAAAGGTGTGAAATTAAAGAACAAAATGCTCTTAAAGCTTATCGTAAAGCGCAGAGGGCTCTTCTTGAGGCGAATGCTAGGTATGATGTTCTTTATCGGAAAAGGGAACTATATTCTGCCGACTTCCGCGCATATGTTATTGACAATCCCAGTTTCTTATATTCCTCAAGGCAGAACGAACAAGCTGGACTTGGGTTGGATTACACTAATAACTTGTCTGAAAATGTGAATTTAATACCCATGTCAAGCCATCAGATGCCGCAGGAGCATAATGGTTGCAATCTAGCAGTTATTGATTCCAATATCCAATGCGTTAACGGTGTTCAGATCCCCAATTCCTACCAGCATTTGAGTGGAGAAAACATTGGCTCAGAACCATGCAGTGAACCTGACGCTAGTACATCTGAGACAATGCCTCTTCTGGGGAATAATGGCACAGATGGAGTTTGCTCTCCATCCAATGAACCAAATGGTTCAACAAATGAAGATGATGATATATATTCATTCAAAAATGAATCTGCTCAACCCAACAATGAATGCCATATTGCAGACAACCAAAAGGAGACTGATAATGAATCAAATAGGATAATGTCTGTTGACCCCAATGAGGAATCTTTACTTCTCGAAAAAGCTTCAAGGTCTACACTATTTGCTAAGCTAGGAACACAAATTCTAGGAACACAAATTGTGTCAAAGAACAGTGTCGTATGTAATGGCACAGGGATTGCAGTGGAACGAGAGGCTGAAAATGATGCGAGAAGTGAAGAACCACAAAAAGCATATTGGAGTTCTCCCTTCTCAGAGGTGGAGAAAAAACTGCAATTTGACATTGAAGGAGCTGATGGGCAAAAAAAAAGTTTCACCGAGGCTCCTCTTGAGATCCAGAGAGAGCATTCCATCAAACATTTCGCTTTGAACCCTCATTCCAGCGGATATTTTGAGGACAGATGTTTCGTTGGAGGTGACCTCTCATTGACTTCCACGATCTTTTCGCCTTCCTACATCTTGAGTAGTGCTTTTGGGTATATGAAGGTTATAGACCCAAACAATACAATGGAACATCAGGACAGAAGTCAACAAAGTGGTACTTGTGATACTAATATTGAAGAAGGTGATTGTATAAATTCTGGTAAAGCGCAGTTTAGCAGTACCATGATAGACACAATGAAAAAGACTCTGGTGAAATTATGTGATAGAGAAGATGGCTCTTATACCACTGGTCCTGCTGTTGATCCCTTCTGGCCACTTTGCATGTATGAGCTACGAGGAAAATGCAACAATGAAGAGTGTCCTTGGCGGCATGTGAAGGACTACTCTACCACCGATATGTCTCAACATCTGCACGATAATTCTGAAATTGCTGGTATGACTAATCCCTTCATGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

955

Amino Acids

105.26

Weight (kDa)

5.51

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3H1 PF10650 909 - 929 1e-07 Putative zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 863
AccI GTMKAC 1 cut(s) 2120
AccII CGCG 1 cut(s) 1608
AciI CCGC 6 cut(s) 197, 216, 1606, 1739, 2409, 2776
AclWI GGATC 6 cut(s) 601, 1224, 1237, 1801, 2353, 2705
AcoI YGGCCR 1 cut(s) 2720
AcsI RAATTY 6 cut(s) 176, 607, 1261, 1708, 2148, 2602
AcuI CTGAAG 2 cut(s) 417, 722
AcyI GRCGYC 3 cut(s) 319, 864, 954
AfaI GTAC 8 cut(s) 79, 291, 684, 796, 1333, 1879, 2566, 2629
AfiI CCNNNNNNNGG 4 cut(s) 339, 931, 1901, 2086
AflII CTTAAG 1 cut(s) 707
AflIII ACRYGT 2 cut(s) 1042, 1334
AjnI CCWGG 6 cut(s) 145, 310, 473, 956, 1161, 1225
AloI GAACNNNNNNTCC 2 cut(s) 2387, 2419
Alw26I GTCTC 4 cut(s) 1303, 1880, 2036, 2814
AlwI GGATC 6 cut(s) 601, 1224, 1237, 1801, 2353, 2705
AlwNI CAGNNNCTG 1 cut(s) 1226
AoxI GGCC 5 cut(s) 149, 341, 467, 763, 2720
ApaI GGGCCC 2 cut(s) 153, 345
ApoI RAATTY 6 cut(s) 176, 607, 1261, 1708, 2148, 2602
ArsI GACNNNNNNTTYG 4 cut(s) 1403, 1435, 2414, 2446
AseI ATTAAT 1 cut(s) 1098
Asp700I GAANNNNTTC 1 cut(s) 176
AspLEI GCGC 4 cut(s) 866, 1531, 1610, 2617
AspS9I GGNCC 6 cut(s) 149, 150, 341, 342, 763, 2699
AsuHPI GGTGA 7 cut(s) 172, 520, 1289, 2332, 2453, 2603, 2671
AsuII TTCGAA 1 cut(s) 1367
AvaII GGWCC 1 cut(s) 2699
BaeGI GKGCMC 2 cut(s) 153, 345
BalI TGGCCA 1 cut(s) 2722
BamHI GGATCC 1 cut(s) 1229
BanI GGYRCC 1 cut(s) 863
BanII GRGCYC 4 cut(s) 153, 345, 1320, 1540
BceAI ACGGC 1 cut(s) 482
BcgI CGANNNNNNTGC 2 cut(s) 2733, 2767
BciT130I CCWGG 6 cut(s) 147, 312, 475, 958, 1163, 1227
BclI TGATCA 2 cut(s) 636, 967
BcoDI GTCTC 4 cut(s) 1303, 1880, 2036, 2814
BfaI CTAG 8 cut(s) 561, 599, 1445, 1557, 1763, 1875, 2138, 2153
BfoI RGCGCY 1 cut(s) 867
BfrI CTTAAG 1 cut(s) 707
BisI GCNGC 2 cut(s) 1739, 2777
BlpI GCTNAGC 2 cut(s) 717, 2133
BlsI GCNGC 2 cut(s) 1740, 2778
Bme1390I CCNGG 6 cut(s) 147, 312, 475, 958, 1163, 1227
Bme18I GGWCC 1 cut(s) 2699
BmgT120I GGNCC 6 cut(s) 149, 150, 341, 342, 763, 2699
BmiI GGNNCC 9 cut(s) 55, 151, 162, 342, 343, 865, 1144, 1231, 2349
BmrFI CCNGG 6 cut(s) 147, 312, 475, 958, 1163, 1227
BmrI ACTGGG 1 cut(s) 1623
BmsI GCATC 5 cut(s) 268, 1003, 1404, 1725, 2221
BmuI ACTGGG 1 cut(s) 1623
BoxI GACNNNNGTC 1 cut(s) 2550
BplI GAGNNNNNCTC 2 cut(s) 2430, 2462
BpmI CTGGAG 3 cut(s) 129, 1095, 1478
Bpu10I CCTNAGC 1 cut(s) 759
Bpu1102I GCTNAGC 2 cut(s) 717, 2133
Bpu14I TTCGAA 1 cut(s) 1367
BpuEI CTTGAG 5 cut(s) 707, 1565, 1630, 2375, 2506
BsaHI GRCGYC 3 cut(s) 319, 864, 954
BsaJI CCNNGG 6 cut(s) 45, 146, 184, 547, 2343, 2771
BsaXI ACNNNNNCTCC 2 cut(s) 2332, 2362
Bsc4I CCNNNNNNNGG 4 cut(s) 339, 931, 1901, 2086
Bse1I ACTGG 7 cut(s) 132, 167, 787, 1078, 1114, 1629, 2701
BseBI CCWGG 6 cut(s) 147, 312, 475, 958, 1163, 1227
BseDI CCNNGG 6 cut(s) 45, 146, 184, 547, 2343, 2771
BseGI GGATG 6 cut(s) 320, 754, 966, 994, 1110, 1934
BseLI CCNNNNNNNGG 4 cut(s) 339, 931, 1901, 2086
BseMII CTCAG 5 cut(s) 731, 890, 1863, 1875, 2292
BseNI ACTGG 7 cut(s) 132, 167, 787, 1078, 1114, 1629, 2701
BseRI GAGGAG 1 cut(s) 2340
BseSI GKGCMC 2 cut(s) 153, 345
BsgI GTGCAG 3 cut(s) 811, 870, 2804
Bsh1236I CGCG 1 cut(s) 1608
BshFI GGCC 5 cut(s) 151, 343, 469, 765, 2722
BshNI GGYRCC 1 cut(s) 863
BslFI GGGAC 3 cut(s) 19, 306, 477
BslI CCNNNNNNNGG 4 cut(s) 339, 931, 1901, 2086
BsmAI GTCTC 4 cut(s) 1303, 1880, 2036, 2814
BsmFI GGGAC 3 cut(s) 19, 306, 477
BsmI GAATGC 3 cut(s) 1558, 2021, 2371
BsnI GGCC 5 cut(s) 151, 343, 469, 765, 2722
Bsp119I TTCGAA 1 cut(s) 1367
Bsp120I GGGCCC 2 cut(s) 149, 341
Bsp1286I GDGCHC 4 cut(s) 153, 345, 1320, 1540
Bsp143I GATC 8 cut(s) 593, 636, 967, 1229, 1806, 2358, 2463, 2710
Bsp1720I GCTNAGC 2 cut(s) 717, 2133
BspACI CCGC 6 cut(s) 197, 216, 1606, 1739, 2409, 2776
BspANI GGCC 5 cut(s) 151, 343, 469, 765, 2722
BspCNI CTCAG 5 cut(s) 730, 889, 1862, 1876, 2291
BspFNI CGCG 1 cut(s) 1608
BspHI TCATGA 1 cut(s) 2859
BspLI GGNNCC 9 cut(s) 55, 151, 162, 342, 343, 865, 1144, 1231, 2349
BspPI GGATC 6 cut(s) 601, 1224, 1237, 1801, 2353, 2705
BspQI GCTCTTC 1 cut(s) 1545
BspT104I TTCGAA 1 cut(s) 1367
BspT107I GGYRCC 1 cut(s) 863
BspTI CTTAAG 1 cut(s) 707
BsrI ACTGG 7 cut(s) 132, 167, 787, 1078, 1114, 1629, 2701
BssECI CCNNGG 6 cut(s) 45, 146, 184, 547, 2343, 2771
BssMI GATC 8 cut(s) 593, 636, 967, 1229, 1806, 2358, 2463, 2710
BssNI GRCGYC 3 cut(s) 319, 864, 954
BssT1I CCWWGG 3 cut(s) 45, 184, 2771
Bst2UI CCWGG 6 cut(s) 147, 312, 475, 958, 1163, 1227
Bst4CI ACNGT 4 cut(s) 383, 1331, 1799, 2180
Bst6I CTCTTC 3 cut(s) 1545, 1902, 2757
BstACI GRCGYC 3 cut(s) 319, 864, 954
BstAFI CTTAAG 1 cut(s) 707
BstAPI GCANNNNNTGC 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 1367
BstC8I GCNNGC 4 cut(s) 220, 471, 1093, 1387
BstDEI CTNAG 9 cut(s) 717, 726, 759, 876, 890, 1849, 1884, 2133, 2278
BstDSI CCRYGG 1 cut(s) 547
BstEII GGTNACC 2 cut(s) 1277, 2441
BstF5I GGATG 6 cut(s) 320, 754, 966, 994, 1110, 1934
BstFNI CGCG 1 cut(s) 1608
BstH2I RGCGCY 1 cut(s) 867
BstHHI GCGC 4 cut(s) 866, 1531, 1610, 2617
BstKTI GATC 8 cut(s) 596, 639, 970, 1232, 1809, 2361, 2466, 2713
BstMAI GTCTC 4 cut(s) 1303, 1880, 2036, 2814
BstMBI GATC 8 cut(s) 593, 636, 967, 1229, 1806, 2358, 2463, 2710
BstMWI GCNNNNNNNGC 5 cut(s) 203, 224, 1514, 1535, 1744
BstNI CCWGG 6 cut(s) 147, 312, 475, 958, 1163, 1227
BstNSI RCATGY 5 cut(s) 744, 1046, 1338, 2734, 2783
BstPAI GACNNNNGTC 1 cut(s) 2550
BstPI GGTNACC 2 cut(s) 1277, 2441
BstSCI CCNGG 6 cut(s) 145, 310, 473, 956, 1161, 1225
BstSLI GKGCMC 2 cut(s) 153, 345
BstUI CGCG 1 cut(s) 1608
BstX2I RGATCY 4 cut(s) 593, 1229, 1806, 2358
BstXI CCANNNNNNTGG 2 cut(s) 460, 1121
BstYI RGATCY 4 cut(s) 593, 1229, 1806, 2358
BsuRI GGCC 5 cut(s) 151, 343, 469, 765, 2722
BtgI CCRYGG 1 cut(s) 547
BtsCI GGATG 6 cut(s) 320, 754, 966, 994, 1110, 1934
BtsI GCAGTG 3 cut(s) 123, 1867, 2214
BtsIMutI CAGTG 9 cut(s) 123, 174, 242, 865, 1172, 1867, 2185, 2214, 2694
Cac8I GCNNGC 4 cut(s) 220, 471, 1093, 1387
CaiI CAGNNNCTG 1 cut(s) 1226
CciI TCATGA 1 cut(s) 2859
CfoI GCGC 4 cut(s) 866, 1531, 1610, 2617
Cfr13I GGNCC 6 cut(s) 149, 150, 341, 342, 763, 2699
CseI GACGC 3 cut(s) 308, 962, 1880
Csp6I GTAC 8 cut(s) 78, 290, 683, 795, 1332, 1878, 2565, 2628
CspCI CAANNNNNGTGG 2 cut(s) 27, 62
CviQI GTAC 8 cut(s) 78, 290, 683, 795, 1332, 1878, 2565, 2628
DdeI CTNAG 9 cut(s) 717, 726, 759, 876, 890, 1849, 1884, 2133, 2278
DinI GGCGCC 1 cut(s) 865
DpnI GATC 8 cut(s) 595, 638, 969, 1231, 1808, 2360, 2465, 2712
DpnII GATC 8 cut(s) 593, 636, 967, 1229, 1806, 2358, 2463, 2710
EaeI YGGCCR 1 cut(s) 2720
Eam1104I CTCTTC 3 cut(s) 1545, 1902, 2757
EarI CTCTTC 3 cut(s) 1545, 1902, 2757
Eco130I CCWWGG 3 cut(s) 45, 184, 2771
Eco24I GRGCYC 4 cut(s) 153, 345, 1320, 1540
Eco47I GGWCC 1 cut(s) 2699
Eco57I CTGAAG 2 cut(s) 417, 722
Eco91I GGTNACC 2 cut(s) 1277, 2441
EcoO109I RGGNCCY 3 cut(s) 149, 341, 763
EcoO65I GGTNACC 2 cut(s) 1277, 2441
EcoRI GAATTC 1 cut(s) 1261
EcoRII CCWGG 6 cut(s) 145, 310, 473, 956, 1161, 1225
EcoT14I CCWWGG 3 cut(s) 45, 184, 2771
EcoT22I ATGCAT 1 cut(s) 746
EcoT38I GRGCYC 4 cut(s) 153, 345, 1320, 1540
EgeI GGCGCC 1 cut(s) 865
EheI GGCGCC 1 cut(s) 865
ErhI CCWWGG 3 cut(s) 45, 184, 2771
FalI AAGNNNNNCTT 4 cut(s) 1653, 1685, 2551, 2583
FaqI GGGAC 3 cut(s) 19, 306, 477
FauI CCCGC 2 cut(s) 190, 223
FauNDI CATATG 1 cut(s) 1612
FbaI TGATCA 2 cut(s) 636, 967
FblI GTMKAC 1 cut(s) 2120
Fnu4HI GCNGC 2 cut(s) 1739, 2777
FokI GGATG 6 cut(s) 327, 761, 973, 981, 1097, 1921
FriOI GRGCYC 4 cut(s) 153, 345, 1320, 1540
Fsp4HI GCNGC 2 cut(s) 1739, 2777
FspBI CTAG 8 cut(s) 561, 599, 1445, 1557, 1763, 1875, 2138, 2153
GlaI GCGC 4 cut(s) 865, 1530, 1609, 2616
GluI GCNGC 2 cut(s) 1739, 2777
GsuI CTGGAG 3 cut(s) 129, 1095, 1478
HaeII RGCGCY 1 cut(s) 867
HaeIII GGCC 5 cut(s) 151, 343, 469, 765, 2722
HgaI GACGC 3 cut(s) 308, 962, 1880
HhaI GCGC 4 cut(s) 866, 1531, 1610, 2617
Hin1I GRCGYC 3 cut(s) 319, 864, 954
Hin6I GCGC 4 cut(s) 864, 1529, 1608, 2615
HinP1I GCGC 4 cut(s) 864, 1529, 1608, 2615
HincII GTYRAC 3 cut(s) 1795, 2077, 2555
HindII GTYRAC 3 cut(s) 1795, 2077, 2555
HindIII AAGCTT 5 cut(s) 364, 704, 845, 1515, 2109
HpaI GTTAAC 1 cut(s) 1795
HphI GGTGA 7 cut(s) 172, 520, 1289, 2332, 2453, 2603, 2671
Hpy166II GTNNAC 8 cut(s) 137, 172, 484, 1795, 1865, 2077, 2121, 2555
Hpy8I GTNNAC 8 cut(s) 137, 172, 484, 1795, 1865, 2077, 2121, 2555
HpyCH4III ACNGT 4 cut(s) 383, 1331, 1799, 2180
HpyCH4IV ACGT 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 224, 1514, 1535, 1744
HpyF3I CTNAG 9 cut(s) 717, 726, 759, 876, 890, 1849, 1884, 2133, 2278
HpySE526I ACGT 1 cut(s) 301
Hsp92I GRCGYC 3 cut(s) 319, 864, 954
HspAI GCGC 4 cut(s) 864, 1529, 1608, 2615
KasI GGCGCC 1 cut(s) 863
Ksp22I TGATCA 2 cut(s) 636, 967
KspAI GTTAAC 1 cut(s) 1795
Kzo9I GATC 8 cut(s) 593, 636, 967, 1229, 1806, 2358, 2463, 2710
LguI GCTCTTC 1 cut(s) 1545
LmnI GCTCC 4 cut(s) 148, 1744, 2315, 2353
LweI GCATC 5 cut(s) 268, 1003, 1404, 1725, 2221
MaeI CTAG 8 cut(s) 561, 599, 1445, 1557, 1763, 1875, 2138, 2153
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 5 cut(s) 736, 1150, 1277, 1390, 2441
MalI GATC 8 cut(s) 595, 638, 969, 1231, 1808, 2360, 2465, 2712
MboI GATC 8 cut(s) 593, 636, 967, 1229, 1806, 2358, 2463, 2710
MfeI CAATTG 1 cut(s) 947
MflI RGATCY 4 cut(s) 593, 1229, 1806, 2358
MhlI GDGCHC 4 cut(s) 153, 345, 1320, 1540
MlsI TGGCCA 1 cut(s) 2722
MluNI TGGCCA 1 cut(s) 2722
Mly113I GGCGCC 1 cut(s) 864
MlyI GAGTC 2 cut(s) 1013, 2647
MmeI TCCRAC 5 cut(s) 1022, 1030, 1271, 1656, 2416
Mox20I TGGCCA 1 cut(s) 2722
Mph1103I ATGCAT 1 cut(s) 746
MroXI GAANNNNTTC 1 cut(s) 176
MscI TGGCCA 1 cut(s) 2722
MslI CAYNNNNRTG 5 cut(s) 313, 533, 1412, 1830, 2804
Msp20I TGGCCA 1 cut(s) 2722
MspA1I CMGCKG 1 cut(s) 2409
MspCI CTTAAG 1 cut(s) 707
MspR9I CCNGG 6 cut(s) 147, 312, 475, 958, 1163, 1227
MunI CAATTG 1 cut(s) 947
Mva1269I GAATGC 3 cut(s) 1558, 2021, 2371
MvaI CCWGG 6 cut(s) 147, 312, 475, 958, 1163, 1227
MvnI CGCG 1 cut(s) 1608
MwoI GCNNNNNNNGC 5 cut(s) 203, 224, 1514, 1535, 1744
NarI GGCGCC 1 cut(s) 864
NdeI CATATG 1 cut(s) 1612
NdeII GATC 8 cut(s) 593, 636, 967, 1229, 1806, 2358, 2463, 2710
NlaIV GGNNCC 9 cut(s) 55, 151, 162, 342, 343, 865, 1144, 1231, 2349
NmuCI GTSAC 3 cut(s) 1150, 1277, 2441
NsiI ATGCAT 1 cut(s) 746
NspI RCATGY 5 cut(s) 744, 1046, 1338, 2734, 2783
NspV TTCGAA 1 cut(s) 1367
PagI TCATGA 1 cut(s) 2859
PciI ACATGT 2 cut(s) 1042, 1334
PciSI GCTCTTC 1 cut(s) 1545
PctI GAATGC 3 cut(s) 1558, 2021, 2371
PdmI GAANNNNTTC 1 cut(s) 176
PkrI GCNGC 2 cut(s) 1740, 2778
PleI GAGTC 2 cut(s) 1012, 2647
PluTI GGCGCC 1 cut(s) 867
PpsI GAGTC 2 cut(s) 1012, 2647
PscI ACATGT 2 cut(s) 1042, 1334
PshAI GACNNNNGTC 1 cut(s) 2550
PshBI ATTAAT 1 cut(s) 1098
Psp6I CCWGG 6 cut(s) 145, 310, 473, 956, 1161, 1225
PspEI GGTNACC 2 cut(s) 1277, 2441
PspGI CCWGG 6 cut(s) 145, 310, 473, 956, 1161, 1225
PspN4I GGNNCC 9 cut(s) 55, 151, 162, 342, 343, 865, 1144, 1231, 2349
PspOMI GGGCCC 2 cut(s) 149, 341
PspPI GGNCC 6 cut(s) 149, 150, 341, 342, 763, 2699
PstNI CAGNNNCTG 1 cut(s) 1226
PsuI RGATCY 4 cut(s) 593, 1229, 1806, 2358
RsaI GTAC 8 cut(s) 79, 291, 684, 796, 1333, 1879, 2566, 2629
RsaNI GTAC 8 cut(s) 78, 290, 683, 795, 1332, 1878, 2565, 2628
RseI CAYNNNNRTG 5 cut(s) 313, 533, 1412, 1830, 2804
SapI GCTCTTC 1 cut(s) 1545
SatI GCNGC 2 cut(s) 1739, 2777
Sau3AI GATC 8 cut(s) 593, 636, 967, 1229, 1806, 2358, 2463, 2710
Sau96I GGNCC 6 cut(s) 149, 150, 341, 342, 763, 2699
SchI GAGTC 2 cut(s) 1013, 2647
ScrFI CCNGG 6 cut(s) 147, 312, 475, 958, 1163, 1227
SduI GDGCHC 4 cut(s) 153, 345, 1320, 1540
SfaNI GCATC 5 cut(s) 268, 1003, 1404, 1725, 2221
SfoI GGCGCC 1 cut(s) 865
SfuI TTCGAA 1 cut(s) 1367
SinI GGWCC 1 cut(s) 2699
SmiMI CAYNNNNRTG 5 cut(s) 313, 533, 1412, 1830, 2804
SmlI CTYRAG 7 cut(s) 10, 686, 707, 1544, 1645, 2354, 2485
SmoI CTYRAG 7 cut(s) 10, 686, 707, 1544, 1645, 2354, 2485
SsiI CCGC 6 cut(s) 197, 216, 1606, 1739, 2409, 2776
SspDI GGCGCC 1 cut(s) 863
SspI AATATT 1 cut(s) 2581
SspMI CTAG 8 cut(s) 561, 599, 1445, 1557, 1763, 1875, 2138, 2153
StyD4I CCNGG 6 cut(s) 145, 310, 473, 956, 1161, 1225
StyI CCWWGG 3 cut(s) 45, 184, 2771
TaaI ACNGT 4 cut(s) 383, 1331, 1799, 2180
TaiI ACGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 1367, 2103
TatI WGTACW 3 cut(s) 682, 794, 1877
TauI GCSGC 2 cut(s) 1741, 2779
TscAI CASTG 9 cut(s) 130, 174, 242, 865, 1179, 1867, 2185, 2214, 2701
TseFI GTSAC 3 cut(s) 1150, 1277, 2441
Tsp45I GTSAC 3 cut(s) 1150, 1277, 2441
TspGWI ACGGA 1 cut(s) 536
TspRI CASTG 9 cut(s) 130, 174, 242, 865, 1179, 1867, 2185, 2214, 2701
Vha464I CTTAAG 1 cut(s) 707
VpaK11BI GGWCC 1 cut(s) 2699
VspI ATTAAT 1 cut(s) 1098
XapI RAATTY 6 cut(s) 176, 607, 1261, 1708, 2148, 2602
XbaI TCTAGA 1 cut(s) 560
XceI RCATGY 5 cut(s) 744, 1046, 1338, 2734, 2783
XcmI CCANNNNNNNNNTGG 1 cut(s) 1829
XmiI GTMKAC 1 cut(s) 2120
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 8 cut(s) 561, 599, 1445, 1557, 1763, 1875, 2138, 2153
Zsp2I ATGCAT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.