Rw1G029810

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005246
Physical Location & Seq
Reverse (-)
57500625 .. 57505528
4904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G029810.1

Sequence Viewer

Length: 3366 bp
ATGCTTAAGAGGCTTAAGGTTTGGGAGCGACATTCAGGGGCGTTACATGCTGTTTCAGAATCAAAGTCGTTCATGGGTTCAGTGGTGGACTGGATGCCAAGTGGGGCGAAAGTTGTGGCTGTTTATGATAGGAAAGCGCAAAATGAGTGTCCTTCAATAGTGTTTTACGAGAGGAATGGGTTAGAAAGAAGCCTGTTTAGCATTAATGAGCAAGCTAATGCAACTGTAGAATTTCTCAAGTGGAATTGCAGTTCAGATCTTCTTGCCGCCGTTGTCAGATGTGATAACTATGACTGTGTCAAGATTTGGTATTTCAGTAACAATCACTGGTACTTAAAATCTGAAATTAGATACCCAAGACACGACGGAGTGAGGTTTGTCTGGAATCCAACAAGGCCACTGCAGTTAATATGTTGGACTCTTGGCGGCCAGATTACATCTTACAACTTCATATGGAATTCAGCCGTGATGGAGGACTCAACTGCATTGGTAATTGATGACTCCAAGATACTTGTAACCCCCCTTTCTTTATACTTAATGCCACCTCCTATGTATTTATTCAGCCTTAAATTCTCGAGTGTTGTCCGGGACTTTGCCTTCTACTCCAAGAATTCTAAGAACTGCTTGGCTGCTTTTCTATCAGATGGCTGTTTATGTATTGTAGAGCTTCCCGCAACTGATACATGGGAAGATCTAGAAGGAAAAGAGTTACTTGTTGAAGCGTCCAGTTCTGATTCACCATTTGGTTCAGTTTTGCATCTAATATGGTTGGATCCCCATAAGATTCTTGCTGTTTCTCACCATGGGTTCAGTCATAGTAATTACTTGCCTCAGACTTCACTTGGTGAGGAAGACCTTGGTTTTTATTTGCAGGAAATTGAGCTTACATGCTCTGAGGATCATGTCCCAGGTTTATTGACATGCTCAGGTTGGAATGCTAAAGTCTCCAGTCGGAACTCTCTAGAAGAGACCATTATTGGAATTACTCCTAATCCTGCTTCAAAAGGTTCAGCATTTGTTCAATTTGATGGTGGAAAGGTTTATGAGTATGTTCCAAAGTTAGGCATCTCCCGAGGGGCTTCAAAGCTTGATTGGAGCTTCTCATCAACTTGCCCTTGGATGAGTGCGGTTCTAGTTGGAGACAGTGTGTCATCGAAACCTCTGCTTTTCGGACTTGATGACAGTTGTAGGCTGCACGTCAGTGGAAAGATAATATGCAACAACTGCAGCAGTTTTTCATTCTACTCAAATTTGGCTGATCAGGTGATCACACATTTAATTTTGGCAACTAAGCAGGATTTGCTTTTTGTTGTTGAAATATCAGATGTATTGCAAAAAGAACTTGAGATAAAACATGAGAACTTCATCCATGCTGGTAAGAAGAAAAGAGTAGAAAATAGAAACTTTATAAACATATGGGAAAGAGGTGCCAAAGTTGTTGGTGTCGTTCATGGAGATGAAGCCGCTGTCCTGTTGCAACCATCTCGTGGCAATCTAGAATGCATTTACCCAAGAAAGTTGGTCCTGGCCTCTATTTGCAATGCATTGGTCCAAAGGCGTTTTAGAGATGCACTTCTCATGGTGAGGCGTCAGAGGATAGATTTCAATGTCTTGGTTGACTATTGTGGTTGGCAGGTGTTTCTTCAATCAGCGGCAGAATTTGTCAAGCAGGTCAATAATTTGAACCACATGACTGAGTTTGTTTGTGCCATAAAGAATGAAGATACTACAGAGACGCTATATAAGGAATTTATTTCTTCACCCTCTCCTAAAGAAGCTAAAGATGTGCAATCGCATGACTCCAAGGGTTTTGATTCCAATAACAAGGTATCTTCTGTGCTGCTGGCCATTAGGAAGGCTCTTGAGGATCAATTACCGGAAACTCCTGCAAGGGAGCTTTGCATTCTGACCACTCTTGCTCGTAGTGACCCCCCTGCACTTGATGAGGCTTTAGAGAGAATAAAAGTTATCCGTGAGGCAGAATTGTCAGGTTCCAATGACCAAAGGAGAATGTCTTACCCCACTGCTGAAGAGGCTTTGAAGCATCTCCTATGGTTATCTGATTCGGAATCTGTTTATGAGGCAGCTTTGGGCCTTTATGATTTGAACCTTGCAGCTATGGTGGCATTGAATTCTCAGCAGGACCCTAAAGAATTCCTTCCTTTTCTTCAAGAATTGGAAAGTATGCCTGATACTTTAATGCGCTATAACATTGACCTTCGGCTGCAGAGGTTTGAGAAGGCCCTCAAGCACATTGTTTCTGCAGGAGACACTTGCTATGCAGATTCTATGAACCTGATGAAGAAAAATCCTCAACTCTTTCCACTGGGACTTCAGCTGATAGCTGATCCTAACAAGAAGAGGCAAGTTCTCGACGCTTGGGGAGATCATCTTAGCAATGAAAAATGCTTTGAGGATGCTGCTACCACTTATTTGTGCTGCTCCAGTTTTGAGAAGGCTTTGAAGTCGTACCGTTCTTGTGGTAATTGGGGTAAGGTGCTTACAGTTGCCGGGCTTCTAAAACTGGGTAAAGATGAGATAATGCAACTGGCTCATGAGCTATGTGAAGAATTGCAAGCTCTTGGTAAACCAAAGGAAGCTGCCAAAATTGCACTGGAGTATTGTGGTGAAATTAACAATGGGATGAGTTTGTTGATTAGCGCAAGGGACTGGGAGGAAGCTTTAAGAGTTGCTTTAATGCACAGTAGACAGGATTTGATCTCTGAGGTGAAGAATGCAGCTTTGGAATGTGCAGTCTTGCTGATTGGTGAATACGAGGAAGGTTTGGAGAAAGTAGGGAAGTACTTGGCTCGCTACTTAGCTTTAAGGCAAAGAAGGTTACTCCTTGCTGCAAAAGTCCAGTCAGAGGAACGGTCAATGAACGATCTTGATGATGATACTGCTTCAGAAGCTAGCAGTAATTTCAGTGGAATGAGTGCTTACACCACTGGGACTAGGAACAGCTCTGCCACTTCCATGAGATCAAGTGCAGCTAGCAGGGCAAGAGATGCCAGGCGTCAGAGAAAGAAAGGAAAAATCCGTGCTGGCAGTCCTGGTGAGGAGATCGCTCTTGTAGATCACTTGAAGGGGATGCCTCCAACAGGTGAAGCACTACAGGAGCTAAAATCCTTGTTGCATACGCTTATGATGCTTGGCGAGGTTGAAACTGCAAGAAAGCTGCAGAAGGCTGGAGAGAACTTTCAACAGTCGCATATGGCAGCAGTCAAACTAGCCGAAGATACAGTATCCACTGATGGCATAGATGAGCAGACACAGACTTTGGAGCATTATACACAAAGTACTAGAGATGTAGTGCAAAACTCCGAGGCTTTCTTTTGGCGTTGTAAAGTATTTCTTTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IKI3

Protein Analysis

1121

Amino Acids

125.73

Weight (kDa)

5.81

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_ELP1_1st PF04762 3 - 130 1.3e-35 ELP1 first N-terminal beta-propeller
Beta-prop_ELP1_2nd PF23797 164 - 480 6.9e-49 ELP1 N-terminal second beta-propeller
A-sol_ELP1 PF23925 505 - 726 6.1e-48 ELP1 alpha-solenoid
TPR_ELP1 PF23878 735 - 896 1.1e-25 ELP1 TPR domain
HB_ELP1 PF23936 908 - 1068 8.9e-15 ELP1 three-helix bundle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1409
AarI CACCTGC 1 cut(s) 1624
Acc36I ACCTGC 2 cut(s) 1624, 1660
AccB1I GGYRCC 1 cut(s) 1427
AccB7I CCANNNNNTGG 1 cut(s) 1487
AccI GTMKAC 1 cut(s) 2707
AciI CCGC 6 cut(s) 267, 426, 672, 1127, 1464, 1652
AclWI GGATC 5 cut(s) 767, 780, 906, 1875, 2342
AcoI YGGCCR 2 cut(s) 427, 1845
AcsI RAATTY 9 cut(s) 230, 457, 569, 610, 1249, 1658, 1748, 2131, 2153
AcuI CTGAAG 3 cut(s) 2049, 2318, 2889
AcyI GRCGYC 2 cut(s) 1588, 3016
AdeI CACNNNGTG 1 cut(s) 845
AfaI GTAC 4 cut(s) 332, 2471, 2804, 3301
AfiI CCNNNNNNNGG 4 cut(s) 1061, 1487, 2866, 3101
AflII CTTAAG 2 cut(s) 5, 14
AhdI GACNNNNNGTC 1 cut(s) 1147
AjiI CACGTC 1 cut(s) 1198
AjnI CCWGG 4 cut(s) 907, 1524, 3011, 3052
AjuI GAANNNNNNNTTGG 2 cut(s) 2726, 2758
AleI CACNNNNGTG 1 cut(s) 1200
AloI GAACNNNNNNTCC 2 cut(s) 235, 267
Alw26I GTCTC 5 cut(s) 949, 962, 1134, 1727, 2262
AlwI GGATC 5 cut(s) 767, 780, 906, 1875, 2342
Ama87I CYCGRG 2 cut(s) 574, 1071
AoxI GGCC 6 cut(s) 395, 427, 1527, 1845, 2092, 2241
ApoI RAATTY 9 cut(s) 230, 457, 569, 610, 1249, 1658, 1748, 2131, 2153
ArsI GACNNNNNNTTYG 6 cut(s) 133, 165, 2846, 2878, 3262, 3294
AseI ATTAAT 1 cut(s) 204
Asp700I GAANNNNTTC 1 cut(s) 2157
AspLEI GCGC 3 cut(s) 139, 2205, 2663
AspS9I GGNCC 5 cut(s) 1522, 1549, 2092, 2143, 2242
AsuC2I CCSGG 2 cut(s) 587, 2512
AsuNHI GCTAGC 2 cut(s) 2912, 2993
AvaI CYCGRG 2 cut(s) 574, 1071
AvaII GGWCC 3 cut(s) 1522, 1549, 2143
BalI TGGCCA 1 cut(s) 1847
BamHI GGATCC 1 cut(s) 772
BanI GGYRCC 1 cut(s) 1427
BauI CACGAG 1 cut(s) 1485
BbsI GAAGAC 1 cut(s) 858
BccI CCATC 5 cut(s) 463, 638, 1022, 1489, 3248
BceAI ACGGC 2 cut(s) 254, 449
BcgI CGANNNNNNTGC 4 cut(s) 1144, 1178, 1466, 1500
BciT130I CCWGG 4 cut(s) 909, 1526, 3013, 3054
BciVI GTATCC 1 cut(s) 3256
BclI TGATCA 2 cut(s) 1258, 1266
BcnI CCSGG 2 cut(s) 587, 2512
BcoDI GTCTC 5 cut(s) 949, 962, 1134, 1727, 2262
BfaI CTAG 9 cut(s) 695, 962, 1133, 1496, 2913, 2955, 2994, 3230, 3303
BfmI CTRYAG 8 cut(s) 225, 401, 1225, 1728, 2225, 2262, 3113, 3179
BfrI CTTAAG 2 cut(s) 5, 14
BfuAI ACCTGC 2 cut(s) 1624, 1660
BfuI GTATCC 1 cut(s) 3256
BglII AGATCT 2 cut(s) 256, 691
BmcAI AGTACT 2 cut(s) 2804, 3301
Bme1390I CCNGG 6 cut(s) 587, 909, 1526, 2512, 3013, 3054
Bme18I GGWCC 3 cut(s) 1522, 1549, 2143
BmeRI GACNNNNNGTC 1 cut(s) 1147
BmeT110I CYCGRG 2 cut(s) 574, 1071
BmgBI CACGTC 1 cut(s) 1198
BmgT120I GGNCC 5 cut(s) 1522, 1549, 2092, 2143, 2242
BmiI GGNNCC 4 cut(s) 774, 1429, 1993, 2145
BmrFI CCNGG 6 cut(s) 587, 909, 1526, 2512, 3013, 3054
BmrI ACTGGG 4 cut(s) 2336, 2534, 2680, 2958
BmsI GCATC 9 cut(s) 84, 766, 1074, 1558, 2053, 2407, 2998, 3081, 3138
BmtI GCTAGC 2 cut(s) 2916, 2997
BmuI ACTGGG 4 cut(s) 2336, 2534, 2680, 2958
BpiI GAAGAC 1 cut(s) 858
BpmI CTGGAG 4 cut(s) 931, 2428, 2636, 3210
Bpu10I CCTNAGC 1 cut(s) 925
BpuEI CTTGAG 4 cut(s) 221, 1364, 1883, 2231
BpuMI CCSGG 2 cut(s) 587, 2512
BsaHI GRCGYC 2 cut(s) 1588, 3016
BsaI GGTCTC 1 cut(s) 962
BsaJI CCNNGG 7 cut(s) 802, 856, 907, 1072, 1115, 1803, 3324
BsaWI WCCGGW 1 cut(s) 1876
BsaXI ACNNNNNCTCC 2 cut(s) 1131, 1161
Bsc4I CCNNNNNNNGG 4 cut(s) 1061, 1487, 2866, 3101
Bse3DI GCAATG 2 cut(s) 1546, 2404
BseBI CCWGG 4 cut(s) 909, 1526, 3013, 3054
BseDI CCNNGG 7 cut(s) 802, 856, 907, 1072, 1115, 1803, 3324
BseGI GGATG 6 cut(s) 99, 1125, 1365, 2422, 2649, 3096
BseLI CCNNNNNNNGG 4 cut(s) 1061, 1487, 2866, 3101
BseMI GCAATG 2 cut(s) 1546, 2404
BseMII CTCAG 6 cut(s) 845, 885, 939, 1686, 2150, 2715
BseRI GAGGAG 1 cut(s) 3074
BsgI GTGCAG 4 cut(s) 1178, 1920, 2772, 3009
BshFI GGCC 6 cut(s) 397, 429, 1529, 1847, 2094, 2243
BshNI GGYRCC 1 cut(s) 1427
BsiHKCI CYCGRG 2 cut(s) 574, 1071
BsiSI CCGG 3 cut(s) 586, 1877, 2511
BslFI GGGAC 5 cut(s) 602, 890, 2343, 2681, 2965
BslI CCNNNNNNNGG 4 cut(s) 1061, 1487, 2866, 3101
BsmAI GTCTC 5 cut(s) 949, 962, 1134, 1727, 2262
BsmBI CGTCTC 1 cut(s) 1727
BsmFI GGGAC 5 cut(s) 602, 890, 2343, 2681, 2965
BsmI GAATGC 4 cut(s) 940, 1505, 1902, 2740
BsnI GGCC 6 cut(s) 397, 429, 1529, 1847, 2094, 2243
Bso31I GGTCTC 1 cut(s) 962
BsoBI CYCGRG 2 cut(s) 574, 1071
Bsp19I CCATGG 1 cut(s) 802
BspACI CCGC 6 cut(s) 267, 426, 672, 1127, 1464, 1652
BspANI GGCC 6 cut(s) 397, 429, 1529, 1847, 2094, 2243
BspCNI CTCAG 6 cut(s) 844, 886, 938, 1687, 2149, 2716
BspHI TCATGA 1 cut(s) 2554
BspLI GGNNCC 4 cut(s) 774, 1429, 1993, 2145
BspMAI CTGCAG 5 cut(s) 405, 1229, 2229, 2266, 3183
BspMI ACCTGC 2 cut(s) 1624, 1660
BspOI GCTAGC 2 cut(s) 2916, 2997
BspPI GGATC 5 cut(s) 767, 780, 906, 1875, 2342
BspT107I GGYRCC 1 cut(s) 1427
BspTI CTTAAG 2 cut(s) 5, 14
BspTNI GGTCTC 1 cut(s) 962
BsrDI GCAATG 2 cut(s) 1546, 2404
BssECI CCNNGG 7 cut(s) 802, 856, 907, 1072, 1115, 1803, 3324
BssNI GRCGYC 2 cut(s) 1588, 3016
BssSI CACGAG 1 cut(s) 1485
BssT1I CCWWGG 4 cut(s) 802, 856, 1115, 1803
Bst2BI CACGAG 1 cut(s) 1485
Bst2UI CCWGG 4 cut(s) 909, 1526, 3013, 3054
Bst6I CTCTTC 3 cut(s) 960, 2025, 2354
BstACI GRCGYC 2 cut(s) 1588, 3016
BstAFI CTTAAG 2 cut(s) 5, 14
BstAPI GCANNNNNTGC 3 cut(s) 1224, 1300, 3008
BstC8I GCNNGC 7 cut(s) 213, 1845, 2577, 2812, 2914, 2995, 3046
BstDSI CCRYGG 1 cut(s) 802
BstENI CCTNNNNNAGG 1 cut(s) 3099
BstF5I GGATG 6 cut(s) 99, 1125, 1365, 2422, 2649, 3096
BstHHI GCGC 3 cut(s) 139, 2205, 2663
BstMAI GTCTC 5 cut(s) 949, 962, 1134, 1727, 2262
BstNI CCWGG 4 cut(s) 909, 1526, 3013, 3054
BstNSI RCATGY 3 cut(s) 50, 891, 924
BstSCI CCNGG 6 cut(s) 585, 907, 1524, 2510, 3011, 3052
BstSFI CTRYAG 8 cut(s) 225, 401, 1225, 1728, 2225, 2262, 3113, 3179
BstV2I GAAGAC 1 cut(s) 858
BstX2I RGATCY 3 cut(s) 256, 691, 772
BstYI RGATCY 3 cut(s) 256, 691, 772
BsuI GTATCC 1 cut(s) 3256
BsuRI GGCC 6 cut(s) 397, 429, 1529, 1847, 2094, 2243
BtgI CCRYGG 1 cut(s) 802
BtrI CACGTC 1 cut(s) 1198
BtsCI GGATG 6 cut(s) 99, 1125, 1365, 2422, 2649, 3096
BtsI GCAGTG 2 cut(s) 398, 2022
BveI ACCTGC 2 cut(s) 1624, 1660
Cac8I GCNNGC 7 cut(s) 213, 1845, 2577, 2812, 2914, 2995, 3046
CciI TCATGA 1 cut(s) 2554
CfoI GCGC 3 cut(s) 139, 2205, 2663
Cfr13I GGNCC 5 cut(s) 1522, 1549, 2092, 2143, 2242
CseI GACGC 5 cut(s) 711, 1577, 1744, 2384, 3005
Csp6I GTAC 4 cut(s) 331, 2470, 2803, 3300
CviQI GTAC 4 cut(s) 331, 2470, 2803, 3300
DraIII CACNNNGTG 1 cut(s) 845
DriI GACNNNNNGTC 1 cut(s) 1147
EaeI YGGCCR 2 cut(s) 427, 1845
Eam1104I CTCTTC 3 cut(s) 960, 2025, 2354
Eam1105I GACNNNNNGTC 1 cut(s) 1147
EarI CTCTTC 3 cut(s) 960, 2025, 2354
Eco130I CCWWGG 4 cut(s) 802, 856, 1115, 1803
Eco31I GGTCTC 1 cut(s) 962
Eco47I GGWCC 3 cut(s) 1522, 1549, 2143
Eco57I CTGAAG 3 cut(s) 2049, 2318, 2889
Eco88I CYCGRG 2 cut(s) 574, 1071
EcoNI CCTNNNNNAGG 1 cut(s) 3099
EcoO109I RGGNCCY 2 cut(s) 2143, 2242
EcoRI GAATTC 4 cut(s) 457, 610, 2131, 2153
EcoRII CCWGG 4 cut(s) 907, 1524, 3011, 3052
EcoT14I CCWWGG 4 cut(s) 802, 856, 1115, 1803
EcoT22I ATGCAT 2 cut(s) 1505, 1546
ErhI CCWWGG 4 cut(s) 802, 856, 1115, 1803
Esp3I CGTCTC 1 cut(s) 1727
FalI AAGNNNNNCTT 9 cut(s) 608, 640, 696, 728, 2142, 2174, 2677, 2709, 3339
FaqI GGGAC 5 cut(s) 602, 890, 2343, 2681, 2965
FauI CCCGC 1 cut(s) 679
FauNDI CATATG 3 cut(s) 452, 1415, 3213
FbaI TGATCA 2 cut(s) 1258, 1266
FblI GTMKAC 1 cut(s) 2707
FokI GGATG 6 cut(s) 106, 1132, 1352, 2429, 2656, 3103
FspBI CTAG 9 cut(s) 695, 962, 1133, 1496, 2913, 2955, 2994, 3230, 3303
GlaI GCGC 3 cut(s) 138, 2204, 2662
GsuI CTGGAG 4 cut(s) 931, 2428, 2636, 3210
HaeIII GGCC 6 cut(s) 397, 429, 1529, 1847, 2094, 2243
HapII CCGG 3 cut(s) 586, 1877, 2511
HgaI GACGC 5 cut(s) 711, 1577, 1744, 2384, 3005
HhaI GCGC 3 cut(s) 139, 2205, 2663
Hin1I GRCGYC 2 cut(s) 1588, 3016
Hin6I GCGC 3 cut(s) 137, 2203, 2661
HinP1I GCGC 3 cut(s) 137, 2203, 2661
HincII GTYRAC 1 cut(s) 1618
HindII GTYRAC 1 cut(s) 1618
HindIII AAGCTT 2 cut(s) 1085, 2679
HpaII CCGG 3 cut(s) 586, 1877, 2511
Hpy166II GTNNAC 4 cut(s) 88, 1618, 2588, 2708
Hpy8I GTNNAC 4 cut(s) 88, 1618, 2588, 2708
Hpy99I CGWCG 2 cut(s) 368, 2378
HpyCH4IV ACGT 1 cut(s) 1197
HpySE526I ACGT 1 cut(s) 1197
Hsp92I GRCGYC 2 cut(s) 1588, 3016
HspAI GCGC 3 cut(s) 137, 2203, 2661
Ksp22I TGATCA 2 cut(s) 1258, 1266
LmnI GCTCC 6 cut(s) 25, 1095, 1894, 2447, 3118, 3283
LweI GCATC 9 cut(s) 84, 766, 1074, 1558, 2053, 2407, 2998, 3081, 3138
MaeI CTAG 9 cut(s) 695, 962, 1133, 1496, 2913, 2955, 2994, 3230, 3303
MaeII ACGT 1 cut(s) 1197
MaeIII GTNAC 6 cut(s) 42, 317, 514, 708, 1925, 2838
MflI RGATCY 3 cut(s) 256, 691, 772
MlsI TGGCCA 1 cut(s) 1847
MluNI TGGCCA 1 cut(s) 1847
MlyI GAGTC 4 cut(s) 412, 470, 494, 1793
MmeI TCCRAC 7 cut(s) 395, 413, 750, 911, 932, 1117, 3122
Mox20I TGGCCA 1 cut(s) 1847
Mph1103I ATGCAT 2 cut(s) 1505, 1546
MroXI GAANNNNTTC 1 cut(s) 2157
MscI TGGCCA 1 cut(s) 1847
MslI CAYNNNNRTG 3 cut(s) 1200, 1455, 2975
Msp20I TGGCCA 1 cut(s) 1847
MspA1I CMGCKG 3 cut(s) 1466, 1652, 2338
MspCI CTTAAG 2 cut(s) 5, 14
MspI CCGG 3 cut(s) 586, 1877, 2511
MspR9I CCNGG 6 cut(s) 587, 909, 1526, 2512, 3013, 3054
Mva1269I GAATGC 4 cut(s) 940, 1505, 1902, 2740
MvaI CCWGG 4 cut(s) 909, 1526, 3013, 3054
NciI CCSGG 2 cut(s) 587, 2512
NcoI CCATGG 1 cut(s) 802
NdeI CATATG 3 cut(s) 452, 1415, 3213
NheI GCTAGC 2 cut(s) 2912, 2993
NlaIV GGNNCC 4 cut(s) 774, 1429, 1993, 2145
NmuCI GTSAC 1 cut(s) 1925
NsiI ATGCAT 2 cut(s) 1505, 1546
NspI RCATGY 3 cut(s) 50, 891, 924
OliI CACNNNNGTG 1 cut(s) 1200
PaeR7I CTCGAG 1 cut(s) 574
PagI TCATGA 1 cut(s) 2554
PaqCI CACCTGC 1 cut(s) 1624
PctI GAATGC 4 cut(s) 940, 1505, 1902, 2740
PdmI GAANNNNTTC 1 cut(s) 2157
PfeI GAWTC 8 cut(s) 59, 385, 734, 784, 1814, 2063, 2069, 2285
PflFI GACNNNGTC 1 cut(s) 296
PflMI CCANNNNNTGG 1 cut(s) 1487
PfoI TCCNGGA 1 cut(s) 585
PleI GAGTC 4 cut(s) 412, 470, 494, 1793
PpsI GAGTC 4 cut(s) 412, 470, 494, 1793
PpuMI RGGWCCY 1 cut(s) 2143
PshBI ATTAAT 1 cut(s) 204
PsiI TTATAA 1 cut(s) 1409
Psp5II RGGWCCY 1 cut(s) 2143
Psp6I CCWGG 4 cut(s) 907, 1524, 3011, 3052
PspGI CCWGG 4 cut(s) 907, 1524, 3011, 3052
PspN4I GGNNCC 4 cut(s) 774, 1429, 1993, 2145
PspPI GGNCC 5 cut(s) 1522, 1549, 2092, 2143, 2242
PspPPI RGGWCCY 1 cut(s) 2143
PstI CTGCAG 5 cut(s) 405, 1229, 2229, 2266, 3183
PsuI RGATCY 3 cut(s) 256, 691, 772
PsyI GACNNNGTC 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 2338
RsaI GTAC 4 cut(s) 332, 2471, 2804, 3301
RsaNI GTAC 4 cut(s) 331, 2470, 2803, 3300
RseI CAYNNNNRTG 3 cut(s) 1200, 1455, 2975
Sau96I GGNCC 5 cut(s) 1522, 1549, 2092, 2143, 2242
ScaI AGTACT 2 cut(s) 2804, 3301
SchI GAGTC 4 cut(s) 412, 470, 494, 1793
ScrFI CCNGG 6 cut(s) 587, 909, 1526, 2512, 3013, 3054
SfaNI GCATC 9 cut(s) 84, 766, 1074, 1558, 2053, 2407, 2998, 3081, 3138
SfcI CTRYAG 8 cut(s) 225, 401, 1225, 1728, 2225, 2262, 3113, 3179
Sfr274I CTCGAG 1 cut(s) 574
SinI GGWCC 3 cut(s) 1522, 1549, 2143
SlaI CTCGAG 1 cut(s) 574
SmiMI CAYNNNNRTG 3 cut(s) 1200, 1455, 2975
SmlI CTYRAG 7 cut(s) 5, 14, 236, 574, 1343, 1862, 2246
SmoI CTYRAG 7 cut(s) 5, 14, 236, 574, 1343, 1862, 2246
SsiI CCGC 6 cut(s) 267, 426, 672, 1127, 1464, 1652
SspMI CTAG 9 cut(s) 695, 962, 1133, 1496, 2913, 2955, 2994, 3230, 3303
StyD4I CCNGG 6 cut(s) 585, 907, 1524, 2510, 3011, 3052
StyI CCWWGG 4 cut(s) 802, 856, 1115, 1803
TaiI ACGT 1 cut(s) 1200
TaqI TCGA 3 cut(s) 575, 1154, 2373
TatI WGTACW 2 cut(s) 2802, 3299
TauI GCSGC 4 cut(s) 269, 429, 1466, 1655
TfiI GAWTC 8 cut(s) 59, 385, 734, 784, 1814, 2063, 2069, 2285
TseFI GTSAC 1 cut(s) 1925
Tsp45I GTSAC 1 cut(s) 1925
TspGWI ACGGA 3 cut(s) 381, 1961, 3029
Tth111I GACNNNGTC 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 1487
Vha464I CTTAAG 2 cut(s) 5, 14
VpaK11BI GGWCC 3 cut(s) 1522, 1549, 2143
VspI ATTAAT 1 cut(s) 204
XagI CCTNNNNNAGG 1 cut(s) 3099
XapI RAATTY 9 cut(s) 230, 457, 569, 610, 1249, 1658, 1748, 2131, 2153
XbaI TCTAGA 3 cut(s) 694, 961, 1495
XceI RCATGY 3 cut(s) 50, 891, 924
XcmI CCANNNNNNNNNTGG 1 cut(s) 2611
XhoI CTCGAG 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 2707
XmnI GAANNNNTTC 1 cut(s) 2157
XspI CTAG 9 cut(s) 695, 962, 1133, 1496, 2913, 2955, 2994, 3230, 3303
ZrmI AGTACT 2 cut(s) 2804, 3301
Zsp2I ATGCAT 2 cut(s) 1505, 1546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.