Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0011578

Physical Location & Seq

Genomic Coordinates Reverse (-)

23547504 .. 23553963

Gene Structure 6460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023429

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1662 bp

ATGGCCGACCAGAGGAAAGGTAGCCTTGAAGATACACCAACATGGGCTGTATCAGTATTTGCTTTATTTATCTTCGTGCTATCCTTTATAATCGATGATGGTCTTCATCGTCTAACGAAGTTTCTTAAAGGAAGGAGAAGAAAATCCCTGAATAGGGCTTTGAAGAAGTTCAAAACAGAAATGATGCAACTGGGTTTCGTATCACTGCTTCTTACTCTCTCGGAAGTACCAATATCGAATATCTGTGTCTCTCAAGTTTTGGCAAACTCTTTTCTTCCCTGTGAATATCCCCTGGATTCAACTACTGTCTCATCAGCCGCACAACTTCCAGCTTCAAATACCAACTTCTCTAAGGAAGTCACCACTCAAACTTACTGCGAGGCAAAGATGAGAAAATGGAATGAATGGGAGGATGAAACTCAGACACTAAATTATCAGATTCTTAACGATCCAAGGAGGTTCCAGCACACCCATCAAACTCCTTTTGGGAAACGACATCTAAAGATCTGGAGTAAACACCCTCTCCTGCTATGGCCTGTTTGTTTTGCTCGGCAGTTTGGTGGCTCAATATCAAAAGTTGATTACATGACTCTGCGAAATGGGTTCATTGTGCTAGTTCGTTACATAAATAGATCAACTTCCTATATGTTCTACAACCATTATTGGCTACCATTCATTCCCTTACTGATTGTTCTACTCGTGGGAACAAAGCTGCAAGTCGTGATAACTAAAATGTGCGCGGAGAGTTGTAAGAAGAATCCTGTGATTCGCGGAAGCTTTAAGGTGGAGCTCAACAATGATTTATTCTGGTTTGGTCAACCCCATTGGCTTCTTCATCTCCTACAGTTTGTCCTAATCCAGAACTCGTTTCAGCTGGCATTCTTGACCTGGAGTTGGATTGAGTATGGCCAAAGTTCATGCTTTAATCGAAGAACAAAAGATGTTATCATAAAGAGTACTATGGGAATTGTTGTGCAGTTGATTTGTGGTTATGTAACCCTCCCTCTTTATGCACTGGTTAACCAGATGGGGTCTGGCATGAGGAAAGCAGTATTTACTGAGCTCGTAGTTGATGGCCTAAAAAACTGGCACAAGAATGCAAGACACAGACTATCGAAGAATGGATCCACTACTTCAAGGAAATCATCAAATTCTGCACATTTTTATTCAACAGATGACTCCTCAATTCTAGACAATGAATGTAGCAACAAAACTCCTAATCCTACCATCGTGAGAAGCTCTTCTTCTACCTCTGAGATAATTGAAGAGCAGGTTCCACCCGGTTTAACTCTGAAGAATGGATCCAGTACTTCAAGGAAATCATCAAATTCTGCACAATTTTATTCAACTGATGACTCCTCAATTCCAGACAATGAATGTAGCTACAAAACTCCTCATCCCACCATCGTGAGAAGCTCATCTTCTACCTCCGAAATAATTGAAGAGCACGCTCCACCCGGTTTAACTCCAAACCTGGATACTACAAGTTTACCAACTCAAGAAATCACCAGAGACGAAGAGAAACCCAACATCATCAACAAAATAATCTATGACGGTGAGATCTCATTTGGGAGAAGTTGGAAATTAAAGCTGGAGAGCATTAGCAAGAGAAGTGGAGAAATCACTTCAATAATTGAAGAAGAAGTTAACTTCGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

554

Amino Acids

62.99

Weight (kDa)

9.03

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	8 - 101	2.8e-27	Mlo family
Mlo	PF03094	120 - 206	2.7e-30	Mlo family
Mlo	PF03094	217 - 390	3.7e-64	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23220
malus_domestica	MD13G1140400.v1.1
prunus_persica	Prupe.3G124700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0481051
rosa_laevigata	RLG00000023425 RLG00000023429
rosa_multiflora	Rmu_sc0001551.1_g000031 Rmu_sc0001551.1_g000036
rosa_rugosa	Rorug03G0189400 Rorug03G0189900
rosa_samantha	Rh3AG240100 Rh3BG275300 Rh3BG275900 Rh3CG271000 Rh3CG271200 Rh3DG266900 Rh3DG267100 Rh3DG267200
rosa_wichuraiana	Rw3G021440 Rw3G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	1261
AccII	CGCG	2 cut(s)	740, 771
AciI	CCGC	3 cut(s)	318, 740, 771
AclWI	GGATC	5 cut(s)	443, 1119, 1132, 1296, 1309
AcoI	YGGCCR	2 cut(s)	3, 907
AcsI	RAATTY	2 cut(s)	1150, 1327
AcuI	CTGAAG	1 cut(s)	1313
AfaI	GTAC	3 cut(s)	228, 958, 1309
AfiI	CCNNNNNNNGG	4 cut(s)	12, 153, 154, 894
AjnI	CCWGG	3 cut(s)	291, 887, 1473
AleI	CACNNNNGTG	1 cut(s)	1406
Alw21I	GWGCWC	3 cut(s)	792, 1065, 1449
Alw26I	GTCTC	3 cut(s)	253, 313, 1506
AlwI	GGATC	5 cut(s)	443, 1119, 1132, 1296, 1309
AoxI	GGCC	4 cut(s)	3, 533, 907, 1075
ApeKI	GCWGC	1 cut(s)	712
ApoI	RAATTY	2 cut(s)	1150, 1327
Asp700I	GAANNNNTTC	2 cut(s)	167, 1240
AspLEI	GCGC	1 cut(s)	740
AsuC2I	CCSGG	2 cut(s)	1281, 1458
AsuHPI	GGTGA	3 cut(s)	352, 1498, 1568
BalI	TGGCCA	1 cut(s)	909
BamHI	GGATCC	2 cut(s)	1124, 1301
BanII	GRGCYC	2 cut(s)	792, 1065
BarI	GAAGNNNNNNTAC	2 cut(s)	192, 224
BauI	CACGAG	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	3 cut(s)	792, 1065, 1449
BbvI	GCAGC	1 cut(s)	699
BccI	CCATC	6 cut(s)	92, 480, 1021, 1067, 1235, 1412
BciT130I	CCWGG	3 cut(s)	293, 889, 1475
BciVI	GTATCC	1 cut(s)	1471
BcnI	CCSGG	2 cut(s)	1281, 1458
BcoDI	GTCTC	3 cut(s)	253, 313, 1506
BfaI	CTAG	2 cut(s)	614, 1190
BfmI	CTRYAG	1 cut(s)	842
BfuAI	ACCTGC	1 cut(s)	1261
BfuI	GTATCC	1 cut(s)	1471
BglII	AGATCT	2 cut(s)	504, 1560
BisI	GCNGC	2 cut(s)	318, 713
BlsI	GCNGC	2 cut(s)	319, 714
BmcAI	AGTACT	2 cut(s)	958, 1309
Bme1390I	CCNGG	5 cut(s)	293, 889, 1281, 1458, 1475
BmiI	GGNNCC	4 cut(s)	461, 1126, 1275, 1303
BmrFI	CCNGG	5 cut(s)	293, 889, 1281, 1458, 1475
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	3 cut(s)	529, 910, 1613
BpuEI	CTTGAG	2 cut(s)	237, 1482
BpuMI	CCSGG	2 cut(s)	1281, 1458
Bsa29I	ATCGAT	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	291, 452
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 153, 154, 894
Bse1I	ACTGG	4 cut(s)	195, 1020, 1091, 1305
BseBI	CCWGG	3 cut(s)	293, 889, 1475
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	291, 452
BseGI	GGATG	2 cut(s)	418, 1396
BseLI	CCNNNNNNNGG	4 cut(s)	12, 153, 154, 894
BseMII	CTCAG	3 cut(s)	434, 1050, 1245
BseNI	ACTGG	4 cut(s)	195, 1020, 1091, 1305
BseRI	GAGGAG	3 cut(s)	1171, 1348, 1383
BseXI	GCAGC	1 cut(s)	699
BsgI	GTGCAG	3 cut(s)	995, 1140, 1317
Bsh1236I	CGCG	2 cut(s)	740, 771
BshFI	GGCC	4 cut(s)	5, 535, 909, 1077
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	3 cut(s)	792, 1065, 1449
BsiSI	CCGG	2 cut(s)	1281, 1458
BslI	CCNNNNNNNGG	4 cut(s)	12, 153, 154, 894
BsmAI	GTCTC	3 cut(s)	253, 313, 1506
BsmBI	CGTCTC	1 cut(s)	1506
BsmI	GAATGC	2 cut(s)	878, 1102
BsnI	GGCC	4 cut(s)	5, 535, 909, 1077
Bsp1286I	GDGCHC	3 cut(s)	792, 1065, 1449
Bsp143I	GATC	7 cut(s)	448, 504, 632, 1124, 1301, 1560, 1654
BspACI	CCGC	3 cut(s)	318, 740, 771
BspANI	GGCC	4 cut(s)	5, 535, 909, 1077
BspCNI	CTCAG	3 cut(s)	433, 1051, 1246
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	2 cut(s)	740, 771
BspLI	GGNNCC	4 cut(s)	461, 1126, 1275, 1303
BspMI	ACCTGC	1 cut(s)	1261
BspPI	GGATC	5 cut(s)	443, 1119, 1132, 1296, 1309
BspQI	GCTCTTC	3 cut(s)	1246, 1260, 1437
BsrI	ACTGG	4 cut(s)	195, 1020, 1091, 1305
BssECI	CCNNGG	2 cut(s)	291, 452
BssMI	GATC	7 cut(s)	448, 504, 632, 1124, 1301, 1560, 1654
BssSI	CACGAG	1 cut(s)	698
BssT1I	CCWWGG	1 cut(s)	452
Bst2BI	CACGAG	1 cut(s)	698
Bst2UI	CCWGG	3 cut(s)	293, 889, 1475
Bst4CI	ACNGT	3 cut(s)	307, 846, 1556
Bst6I	CTCTTC	4 cut(s)	1246, 1260, 1437, 1512
BstC8I	GCNNGC	2 cut(s)	876, 1449
BstDEI	CTNAG	4 cut(s)	351, 420, 1059, 1254
BstF5I	GGATG	2 cut(s)	418, 1396
BstFNI	CGCG	2 cut(s)	740, 771
BstHHI	GCGC	1 cut(s)	740
BstKTI	GATC	7 cut(s)	451, 507, 635, 1127, 1304, 1563, 1657
BstMAI	GTCTC	3 cut(s)	253, 313, 1506
BstMBI	GATC	7 cut(s)	448, 504, 632, 1124, 1301, 1560, 1654
BstNI	CCWGG	3 cut(s)	293, 889, 1475
BstSCI	CCNGG	5 cut(s)	291, 887, 1279, 1456, 1473
BstSFI	CTRYAG	1 cut(s)	842
BstUI	CGCG	2 cut(s)	740, 771
BstV1I	GCAGC	1 cut(s)	699
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	4 cut(s)	504, 1124, 1301, 1560
BstYI	RGATCY	4 cut(s)	504, 1124, 1301, 1560
Bsu15I	ATCGAT	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	1471
BsuRI	GGCC	4 cut(s)	5, 535, 909, 1077
BsuTUI	ATCGAT	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	418, 1396
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	2 cut(s)	203, 1013
BveI	ACCTGC	1 cut(s)	1261
Cac8I	GCNNGC	2 cut(s)	876, 1449
CfoI	GCGC	1 cut(s)	740
ClaI	ATCGAT	1 cut(s)	93
Csp6I	GTAC	3 cut(s)	227, 957, 1308
CspCI	CAANNNNNGTGG	2 cut(s)	1594, 1629
CviAII	CATG	4 cut(s)	42, 586, 918, 1039
CviQI	GTAC	3 cut(s)	227, 957, 1308
DdeI	CTNAG	4 cut(s)	351, 420, 1059, 1254
DpnI	GATC	7 cut(s)	450, 506, 634, 1126, 1303, 1562, 1656
DpnII	GATC	7 cut(s)	448, 504, 632, 1124, 1301, 1560, 1654
EaeI	YGGCCR	2 cut(s)	3, 907
Eam1104I	CTCTTC	4 cut(s)	1246, 1260, 1437, 1512
EarI	CTCTTC	4 cut(s)	1246, 1260, 1437, 1512
Ecl136II	GAGCTC	2 cut(s)	790, 1063
Eco130I	CCWWGG	1 cut(s)	452
Eco24I	GRGCYC	2 cut(s)	792, 1065
Eco53kI	GAGCTC	2 cut(s)	790, 1063
Eco57I	CTGAAG	1 cut(s)	1313
EcoICRI	GAGCTC	2 cut(s)	790, 1063
EcoRII	CCWGG	3 cut(s)	291, 887, 1473
EcoT14I	CCWWGG	1 cut(s)	452
EcoT38I	GRGCYC	2 cut(s)	792, 1065
ErhI	CCWWGG	1 cut(s)	452
Esp3I	CGTCTC	1 cut(s)	1506
FaeI	CATG	4 cut(s)	45, 589, 921, 1042
FalI	AAGNNNNNCTT	6 cut(s)	9, 41, 1228, 1260, 1405, 1437
FatI	CATG	4 cut(s)	41, 585, 917, 1038
Fnu4HI	GCNGC	2 cut(s)	318, 713
FokI	GGATG	2 cut(s)	425, 1383
FriOI	GRGCYC	2 cut(s)	792, 1065
Fsp4HI	GCNGC	2 cut(s)	318, 713
FspBI	CTAG	2 cut(s)	614, 1190
GlaI	GCGC	1 cut(s)	739
GluI	GCNGC	2 cut(s)	318, 713
GsuI	CTGGAG	3 cut(s)	529, 910, 1613
HaeIII	GGCC	4 cut(s)	5, 535, 909, 1077
HapII	CCGG	2 cut(s)	1281, 1458
HhaI	GCGC	1 cut(s)	740
Hin1II	CATG	4 cut(s)	45, 589, 921, 1042
Hin6I	GCGC	1 cut(s)	738
HinP1I	GCGC	1 cut(s)	738
HincII	GTYRAC	3 cut(s)	818, 1021, 1648
HindII	GTYRAC	3 cut(s)	818, 1021, 1648
HindIII	AAGCTT	1 cut(s)	775
HinfI	GANTC	7 cut(s)	296, 439, 589, 757, 766, 1178, 1355
HpaI	GTTAAC	2 cut(s)	1021, 1648
HpaII	CCGG	2 cut(s)	1281, 1458
HphI	GGTGA	3 cut(s)	352, 1498, 1568
Hpy166II	GTNNAC	5 cut(s)	515, 818, 1021, 1490, 1648
Hpy188I	TCNGA	6 cut(s)	223, 423, 438, 1255, 1293, 1432
Hpy188III	TCNNGA	9 cut(s)	508, 721, 859, 883, 1190, 1231, 1367, 1408, 1499
Hpy8I	GTNNAC	5 cut(s)	515, 818, 1021, 1490, 1648
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	3 cut(s)	307, 846, 1556
HpyCH4V	TGCA	7 cut(s)	187, 715, 976, 1013, 1100, 1157, 1334
HpyF3I	CTNAG	4 cut(s)	351, 420, 1059, 1254
Hsp92II	CATG	4 cut(s)	45, 589, 921, 1042
HspAI	GCGC	1 cut(s)	738
KspAI	GTTAAC	2 cut(s)	1021, 1648
Kzo9I	GATC	7 cut(s)	448, 504, 632, 1124, 1301, 1560, 1654
LguI	GCTCTTC	3 cut(s)	1246, 1260, 1437
LmnI	GCTCC	2 cut(s)	787, 1456
Lsp1109I	GCAGC	1 cut(s)	699
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	2 cut(s)	614, 1190
MaeIII	GTNAC	3 cut(s)	358, 620, 994
MalI	GATC	7 cut(s)	450, 506, 634, 1126, 1303, 1562, 1656
MboI	GATC	7 cut(s)	448, 504, 632, 1124, 1301, 1560, 1654
MflI	RGATCY	4 cut(s)	504, 1124, 1301, 1560
MhlI	GDGCHC	3 cut(s)	792, 1065, 1449
MlsI	TGGCCA	1 cut(s)	909
MluNI	TGGCCA	1 cut(s)	909
MlyI	GAGTC	3 cut(s)	583, 1172, 1349
MmeI	TCCRAC	2 cut(s)	875, 1559
Mox20I	TGGCCA	1 cut(s)	909
MroXI	GAANNNNTTC	2 cut(s)	167, 1240
MscI	TGGCCA	1 cut(s)	909
MseI	TTAA	9 cut(s)	126, 444, 780, 924, 1020, 1286, 1463, 1586, 1647
MslI	CAYNNNNRTG	3 cut(s)	40, 1095, 1406
Msp20I	TGGCCA	1 cut(s)	909
MspA1I	CMGCKG	1 cut(s)	874
MspI	CCGG	2 cut(s)	1281, 1458
MspR9I	CCNGG	5 cut(s)	293, 889, 1281, 1458, 1475
Mva1269I	GAATGC	2 cut(s)	878, 1102
MvaI	CCWGG	3 cut(s)	293, 889, 1475
MvnI	CGCG	2 cut(s)	740, 771
NciI	CCSGG	2 cut(s)	1281, 1458
NdeII	GATC	7 cut(s)	448, 504, 632, 1124, 1301, 1560, 1654
NlaIII	CATG	4 cut(s)	45, 589, 921, 1042
NlaIV	GGNNCC	4 cut(s)	461, 1126, 1275, 1303
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	1 cut(s)	358
OliI	CACNNNNGTG	1 cut(s)	1406
PciSI	GCTCTTC	3 cut(s)	1246, 1260, 1437
PctI	GAATGC	2 cut(s)	878, 1102
PdmI	GAANNNNTTC	2 cut(s)	167, 1240
PfeI	GAWTC	4 cut(s)	296, 439, 757, 766
PkrI	GCNGC	2 cut(s)	319, 714
PleI	GAGTC	3 cut(s)	583, 1172, 1349
PpsI	GAGTC	3 cut(s)	583, 1172, 1349
PsiI	TTATAA	1 cut(s)	89
Psp124BI	GAGCTC	2 cut(s)	792, 1065
Psp6I	CCWGG	3 cut(s)	291, 887, 1473
PspGI	CCWGG	3 cut(s)	291, 887, 1473
PspN4I	GGNNCC	4 cut(s)	461, 1126, 1275, 1303
PsuI	RGATCY	4 cut(s)	504, 1124, 1301, 1560
PvuII	CAGCTG	1 cut(s)	874
RsaI	GTAC	3 cut(s)	228, 958, 1309
RsaNI	GTAC	3 cut(s)	227, 957, 1308
RseI	CAYNNNNRTG	3 cut(s)	40, 1095, 1406
SacI	GAGCTC	2 cut(s)	792, 1065
SapI	GCTCTTC	3 cut(s)	1246, 1260, 1437
SaqAI	TTAA	9 cut(s)	126, 444, 780, 924, 1020, 1286, 1463, 1586, 1647
SatI	GCNGC	2 cut(s)	318, 713
Sau3AI	GATC	7 cut(s)	448, 504, 632, 1124, 1301, 1560, 1654
ScaI	AGTACT	2 cut(s)	958, 1309
SchI	GAGTC	3 cut(s)	583, 1172, 1349
ScrFI	CCNGG	5 cut(s)	293, 889, 1281, 1458, 1475
SduI	GDGCHC	3 cut(s)	792, 1065, 1449
SfaNI	GCATC	1 cut(s)	174
SfcI	CTRYAG	1 cut(s)	842
SmiMI	CAYNNNNRTG	3 cut(s)	40, 1095, 1406
SmlI	CTYRAG	2 cut(s)	252, 1497
SmoI	CTYRAG	2 cut(s)	252, 1497
SsiI	CCGC	3 cut(s)	318, 740, 771
SspMI	CTAG	2 cut(s)	614, 1190
SstI	GAGCTC	2 cut(s)	792, 1065
StyD4I	CCNGG	5 cut(s)	291, 887, 1279, 1456, 1473
StyI	CCWWGG	1 cut(s)	452
TaaI	ACNGT	3 cut(s)	307, 846, 1556
TaqI	TCGA	5 cut(s)	93, 236, 928, 1115, 1653
TatI	WGTACW	2 cut(s)	956, 1307
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	4 cut(s)	296, 439, 757, 766
Tru1I	TTAA	9 cut(s)	126, 444, 780, 924, 1020, 1286, 1463, 1586, 1647
Tru9I	TTAA	9 cut(s)	126, 444, 780, 924, 1020, 1286, 1463, 1586, 1647
TscAI	CASTG	2 cut(s)	210, 1020
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	712
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	9 cut(s)	95, 417, 429, 595, 664, 824, 906, 1212, 1389
TspRI	CASTG	2 cut(s)	210, 1020
XapI	RAATTY	2 cut(s)	1150, 1327
XbaI	TCTAGA	1 cut(s)	1189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1031
XmnI	GAANNNNTTC	2 cut(s)	167, 1240
XspI	CTAG	2 cut(s)	614, 1190
ZrmI	AGTACT	2 cut(s)	958, 1309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.