Rorug03G0189900

MLO-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011578
Physical Location & Seq
Forward (+)
16595641 .. 16596196
556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0189900.1

Sequence Viewer

Length: 471 bp
ATGTTGGTGGCTGAAATCAACGGCAGCTTCGGAAGATTCTCAAAGGTCTTTGCTTTTTCACTGTTGCTGGTGACATCAGGGAGTGAAGGAAAAGGGGGTTTCGAAAGATTGGGCCTTTCATTGGGTTTGAAGTTCTGGGTGGTGTTTCGATTTTGGGGTTTGGAATTCTGGGTGTTTCGGTTCTGGGGCTTTGAGGGTTTAGGCCTCTATCGTTCCGGCAACCGTTGTTCCAGTCCCCGAGGATTTTCGAGGAGTTGCCCACCACCACCATCATCTCCGTCTCTCGCCCCGACACTGACGATATCAACCCCATGCTTCTCTCGTACACAAACGAGTTCAAATACAACCAAGCACAATCACCTATCTCTCTCTTACACCAGCACCGGCAAGAAATCACGATCAGCTTTAGACGTGGGTGCCCAGAGCACTTTTTTTTTTTTTTTTTCCTGGTATCCTGAGATTGCAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

156

Amino Acids

17.36

Weight (kDa)

10.11

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 416
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 2 cut(s) 130, 339
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 1 cut(s) 446
AluBI AGCT 2 cut(s) 27, 404
AluI AGCT 2 cut(s) 27, 404
Alw21I GWGCWC 1 cut(s) 428
Alw26I GTCTC 1 cut(s) 285
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 2 cut(s) 112, 202
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 82, 350
AsuII TTCGAA 1 cut(s) 102
AvaI CYCGRG 1 cut(s) 237
BaeGI GKGCMC 1 cut(s) 421
BanI GGYRCC 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 428
BbvI GCAGC 1 cut(s) 36
BccI CCATC 1 cut(s) 277
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 448
BciVI GTATCC 1 cut(s) 462
BcoDI GTCTC 1 cut(s) 285
BfuI GTATCC 1 cut(s) 462
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 448
BmeT110I CYCGRG 1 cut(s) 237
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 1 cut(s) 448
Bpu14I TTCGAA 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 1 cut(s) 448
BseDI CCNNGG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 265
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 1 cut(s) 36
BshFI GGCC 2 cut(s) 114, 204
BshNI GGYRCC 1 cut(s) 416
BsiHKAI GWGCWC 1 cut(s) 428
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 2 cut(s) 216, 384
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 285
BsmBI CGTCTC 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 2 cut(s) 114, 204
BsoBI CYCGRG 1 cut(s) 237
Bsp119I TTCGAA 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 421, 428
Bsp143I GATC 1 cut(s) 398
BspANI GGCC 2 cut(s) 114, 204
BspCNI CTCAG 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 418
BspT104I TTCGAA 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 383
BsrI ACTGG 1 cut(s) 231
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 448
Bst4CI ACNGT 2 cut(s) 63, 224
BstBI TTCGAA 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 456
BstKTI GATC 1 cut(s) 401
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 1 cut(s) 398
BstNI CCWGG 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 446
BstSLI GKGCMC 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 36
BsuI GTATCC 1 cut(s) 462
BsuRI GGCC 2 cut(s) 114, 204
BtrI CACGTC 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 59, 293
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 324
CviAII CATG 1 cut(s) 312
CviJI RGCY 6 cut(s) 11, 27, 114, 189, 204, 404
CviKI_1 RGCY 6 cut(s) 11, 27, 114, 189, 204, 404
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 1 cut(s) 456
DpnI GATC 1 cut(s) 400
DpnII GATC 1 cut(s) 398
Eco147I AGGCCT 1 cut(s) 204
Eco32I GATATC 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 446
EcoRV GATATC 1 cut(s) 303
Esp3I CGTCTC 1 cut(s) 285
FaeI CATG 1 cut(s) 315
FaiI YATR 1 cut(s) 313
FaqI GGGAC 1 cut(s) 219
FatI CATG 1 cut(s) 311
Fnu4HI GCNGC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 25
GluI GCNGC 1 cut(s) 25
HaeIII GGCC 2 cut(s) 114, 204
HapII CCGG 2 cut(s) 216, 384
Hin1II CATG 1 cut(s) 315
HinfI GANTC 1 cut(s) 36
HpaII CCGG 2 cut(s) 216, 384
HphI GGTGA 2 cut(s) 82, 350
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 2 cut(s) 396, 455
Hpy8I GTNNAC 1 cut(s) 326
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 63, 224
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 1 cut(s) 464
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 1 cut(s) 315
Kzo9I GATC 1 cut(s) 398
Lsp1109I GCAGC 1 cut(s) 36
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 400
MboI GATC 1 cut(s) 398
MboII GAAGA 1 cut(s) 45
MhlI GDGCHC 2 cut(s) 421, 428
MluCI AATT 1 cut(s) 164
MnlI CCTC 4 cut(s) 187, 215, 233, 243
MspI CCGG 2 cut(s) 216, 384
MspR9I CCNGG 1 cut(s) 448
MvaI CCWGG 1 cut(s) 448
NdeII GATC 1 cut(s) 398
NlaIII CATG 1 cut(s) 315
NlaIV GGNNCC 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 70
NspV TTCGAA 1 cut(s) 102
PceI AGGCCT 1 cut(s) 204
PfeI GAWTC 1 cut(s) 36
PkrI GCNGC 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 446
PspGI CCWGG 1 cut(s) 446
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 1 cut(s) 112
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 1 cut(s) 398
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 448
SduI GDGCHC 2 cut(s) 421, 428
SetI ASST 5 cut(s) 29, 48, 363, 406, 414
SfuI TTCGAA 1 cut(s) 102
Sse9I AATT 1 cut(s) 164
SseBI AGGCCT 1 cut(s) 204
StuI AGGCCT 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 446
TaaI ACNGT 2 cut(s) 63, 224
TaiI ACGT 1 cut(s) 414
TaqI TCGA 3 cut(s) 102, 148, 248
TasI AATT 1 cut(s) 164
TfiI GAWTC 1 cut(s) 36
TscAI CASTG 2 cut(s) 66, 300
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 108
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 2 cut(s) 66, 300
XapI RAATTY 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.