Rorug03G0189400

MLO-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011578
Physical Location & Seq
Forward (+)
16517127 .. 16517441
315 bp
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UTR
Exon/CDS
Intron
Rorug03G0189400.1

Sequence Viewer

Length: 315 bp
ATGCTTGCCGGTGGTGGGAAGCCATTGCATGGCATAATTTCTCCAGAGCATGCAGAGGTAGAGGCATGTAAGCAGGCAATGGAATTTGTGGTGGAGCAGTCCTTCTTGCCAGCTATTATTGAAACTGATTCTATTTTGGTGCAGCAGCAGTTGGTCAGTAAGAATGGGCCTAATACATCAGTTCTGGGACGTATGTATGATGATTTGGGTGTCATTCTGGTAGCTAATCCAAACATGCAGGTTGTTCATACCAAAAGGACTGCAAATAAGGTGGGCACACCTTATGGCAGCCTCTTGTACCTCAGCTCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

104

Amino Acids

11.16

Weight (kDa)

5.82

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 4 - 91 4.1e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 229
AccB7I CCANNNNNTGG 1 cut(s) 29
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 2 cut(s) 15, 29
AgsI TTSAA 1 cut(s) 122
AluBI AGCT 3 cut(s) 113, 224, 306
AluI AGCT 3 cut(s) 113, 224, 306
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 3 cut(s) 142, 145, 288
ApoI RAATTY 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 278
BbvCI CCTCAGC 1 cut(s) 302
BbvI GCAGC 3 cut(s) 154, 157, 300
BfuAI ACCTGC 1 cut(s) 229
BisI GCNGC 3 cut(s) 143, 146, 289
BlsI GCNGC 3 cut(s) 144, 147, 290
BmgT120I GGNCC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 302
BsaXI ACNNNNNCTCC 1 cut(s) 290
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 29
Bse118I RCCGGY 1 cut(s) 8
Bse3DI GCAATG 2 cut(s) 23, 84
BseLI CCNNNNNNNGG 2 cut(s) 15, 29
BseMI GCAATG 2 cut(s) 23, 84
BseSI GKGCMC 1 cut(s) 278
BseXI GCAGC 3 cut(s) 154, 157, 300
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 1 cut(s) 169
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 15, 29
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 278
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 315
BspMI ACCTGC 1 cut(s) 229
BsrDI GCAATG 2 cut(s) 23, 84
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BstC8I GCNNGC 4 cut(s) 6, 51, 75, 111
BstDEI CTNAG 1 cut(s) 302
BstNSI RCATGY 3 cut(s) 53, 69, 238
BstSLI GKGCMC 1 cut(s) 278
BstV1I GCAGC 3 cut(s) 154, 157, 300
BsuRI GGCC 1 cut(s) 169
BveI ACCTGC 1 cut(s) 229
Cac8I GCNNGC 4 cut(s) 6, 51, 75, 111
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 298
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 5 cut(s) 29, 50, 66, 235, 312
CviJI RGCY 6 cut(s) 22, 113, 169, 224, 291, 306
CviKI_1 RGCY 6 cut(s) 22, 113, 169, 224, 291, 306
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 302
FaeI CATG 5 cut(s) 32, 53, 69, 238, 315
FaqI GGGAC 1 cut(s) 201
FatI CATG 5 cut(s) 28, 49, 65, 234, 311
Fnu4HI GCNGC 3 cut(s) 143, 146, 289
Fsp4HI GCNGC 3 cut(s) 143, 146, 289
GluI GCNGC 3 cut(s) 143, 146, 289
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 169
HapII CCGG 1 cut(s) 9
Hin1II CATG 5 cut(s) 32, 53, 69, 238, 315
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 5 cut(s) 28, 53, 142, 238, 263
HpyF3I CTNAG 1 cut(s) 302
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 5 cut(s) 32, 53, 69, 238, 315
LmnI GCTCC 2 cut(s) 94, 311
LpnPI CCDG 7 cut(s) 22, 57, 59, 123, 170, 203, 224
Lsp1109I GCAGC 3 cut(s) 154, 157, 300
MaeII ACGT 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 2 cut(s) 36, 83
MnlI CCTC 4 cut(s) 49, 55, 302, 311
MspI CCGG 1 cut(s) 9
NlaIII CATG 5 cut(s) 32, 53, 69, 238, 315
NspI RCATGY 3 cut(s) 53, 69, 238
PaeI GCATGC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 29
PkrI GCNGC 3 cut(s) 144, 147, 290
PspPI GGNCC 1 cut(s) 167
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SatI GCNGC 3 cut(s) 143, 146, 289
Sau96I GGNCC 1 cut(s) 167
SduI GDGCHC 1 cut(s) 278
SetI ASST 9 cut(s) 60, 115, 193, 226, 243, 273, 283, 303, 308
SphI GCATGC 1 cut(s) 53
Sse9I AATT 2 cut(s) 36, 83
TaiI ACGT 1 cut(s) 193
TasI AATT 2 cut(s) 36, 83
TfiI GAWTC 1 cut(s) 128
TseI GCWGC 3 cut(s) 142, 145, 288
TspDTI ATGAA 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 29
XapI RAATTY 1 cut(s) 83
XceI RCATGY 3 cut(s) 53, 69, 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.