Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001551.1

Orthogroup ID

OG0011578

Physical Location & Seq

Genomic Coordinates Reverse (-)

134203 .. 135232

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001551.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgaattcagttgatcgaattggtttgcagaactcgtttcagctggcattcttgacctggacatggtttgaatttggccagaattcatgctttaatcgaagaacaaaagatatcgtcattaagagtagtatgggactgggtgtgcagttgatatgtggttatgtgaccctccctctttacgcactggttacccagatggggtctggcatgaggaaagcagtatttactgagctcgtagttgatggcctcaaaaactggcacaagaatgcaagacgcagactatcgaagaatggatcctctacttcaaggaaatcatcaaattctgcacacatttattcaaccgatgactcctcatttacagacaatgaatgtagctacaaaactcctaatcccaccatagtgagaagctcttcttctacctccgaaataattgaagagcgcgttccagccggtttaagtccgaagaatggatccactacttcaaggaaatcctccgattctgcacatttttattcaaatgataactcctcatttccagacaatgaatgtagcaacaaaaatcctaatcccaccatagtgagaagctcttcttctacctccgaaataattgaagagcaagttccacccggtttaattccgaacccggatactacaagtttaccaactccagaaatcaccagagaggaacagaatcccaacatcatcaacaaaataatctatgacggagagatttcttttgggagcagttggaaattaaagctggagagcatgagcaagagaagtggggaaatcacttcaataattgaagacgaacttaacttcgatcggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

276

Amino Acids

30.67

Weight (kDa)

6.35

Isoelectric Point (pI)

61.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23220
malus_domestica	MD13G1140400.v1.1
prunus_persica	Prupe.3G124700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0481051
rosa_laevigata	RLG00000023425 RLG00000023429
rosa_multiflora	Rmu_sc0001551.1_g000031 Rmu_sc0001551.1_g000036
rosa_rugosa	Rorug03G0189400 Rorug03G0189900
rosa_samantha	Rh3AG240100 Rh3BG275300 Rh3BG275900 Rh3CG271000 Rh3CG271200 Rh3DG266900 Rh3DG267100 Rh3DG267200
rosa_wichuraiana	Rw3G021440 Rw3G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	441
AclWI	GGATC	4 cut(s)	288, 301, 465, 478
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	4 cut(s)	4, 71, 82, 319
AfiI	CCNNNNNNNGG	3 cut(s)	63, 198, 467
AgsI	TTSAA	9 cut(s)	71, 306, 339, 434, 483, 516, 611, 798, 806
AjnI	CCWGG	1 cut(s)	56
AleI	CACNNNNGTG	2 cut(s)	398, 575
AluBI	AGCT	6 cut(s)	43, 232, 375, 408, 585, 760
AluI	AGCT	6 cut(s)	43, 232, 375, 408, 585, 760
Alw21I	GWGCWC	1 cut(s)	234
AlwI	GGATC	4 cut(s)	288, 301, 465, 478
AoxI	GGCC	2 cut(s)	76, 244
ApoI	RAATTY	4 cut(s)	4, 71, 82, 319
Asp700I	GAANNNNTTC	2 cut(s)	409, 586
AspLEI	GCGC	1 cut(s)	441
AsuC2I	CCSGG	2 cut(s)	627, 644
AsuHPI	GGTGA	1 cut(s)	667
BalI	TGGCCA	1 cut(s)	78
BamHI	GGATCC	2 cut(s)	293, 470
BanII	GRGCYC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	234
BccI	CCATC	2 cut(s)	190, 236
BciT130I	CCWGG	1 cut(s)	58
BciVI	GTATCC	1 cut(s)	640
BcnI	CCSGG	2 cut(s)	627, 644
BfuI	GTATCC	1 cut(s)	640
Bme1390I	CCNGG	3 cut(s)	58, 627, 644
BmiI	GGNNCC	2 cut(s)	295, 472
BmrFI	CCNGG	3 cut(s)	58, 627, 644
BmrI	ACTGGG	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	813
BpmI	CTGGAG	2 cut(s)	651, 782
BpuMI	CCSGG	2 cut(s)	627, 644
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 198, 467
Bse118I	RCCGGY	1 cut(s)	449
Bse1I	ACTGG	3 cut(s)	141, 189, 260
BseBI	CCWGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	3 cut(s)	63, 198, 467
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	3 cut(s)	141, 189, 260
BseRI	GAGGAG	2 cut(s)	340, 517
BsgI	GTGCAG	3 cut(s)	164, 309, 486
Bsh1236I	CGCG	1 cut(s)	441
Bsh1285I	CGRYCG	1 cut(s)	826
BshFI	GGCC	2 cut(s)	78, 246
BsiEI	CGRYCG	1 cut(s)	826
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	3 cut(s)	450, 627, 644
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	3 cut(s)	63, 198, 467
BsmFI	GGGAC	1 cut(s)	147
BsmI	GAATGC	2 cut(s)	47, 271
BsnI	GGCC	2 cut(s)	78, 246
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	4 cut(s)	13, 293, 470, 823
BspANI	GGCC	2 cut(s)	78, 246
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	295, 472
BspPI	GGATC	4 cut(s)	288, 301, 465, 478
BspQI	GCTCTTC	4 cut(s)	415, 429, 592, 606
BsrFI	RCCGGY	1 cut(s)	449
BsrI	ACTGG	3 cut(s)	141, 189, 260
BssAI	RCCGGY	1 cut(s)	449
BssMI	GATC	4 cut(s)	13, 293, 470, 823
Bst2UI	CCWGG	1 cut(s)	58
Bst6I	CTCTTC	4 cut(s)	415, 429, 592, 606
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	228
BstEII	GGTNACC	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	441
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	4 cut(s)	16, 296, 473, 826
BstMBI	GATC	4 cut(s)	13, 293, 470, 823
BstMCI	CGRYCG	1 cut(s)	826
BstNI	CCWGG	1 cut(s)	58
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	3 cut(s)	56, 625, 642
BstUI	CGCG	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	813
BstX2I	RGATCY	2 cut(s)	293, 470
BstYI	RGATCY	2 cut(s)	293, 470
BsuI	GTATCC	1 cut(s)	640
BsuRI	GGCC	2 cut(s)	78, 246
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	441
Cfr10I	RCCGGY	1 cut(s)	449
CseI	GACGC	1 cut(s)	282
CspCI	CAANNNNNGTGG	2 cut(s)	763, 798
CviAII	CATG	4 cut(s)	63, 87, 208, 769
CviJI	RGCY	9 cut(s)	43, 78, 232, 246, 375, 408, 449, 585, 760
CviKI_1	RGCY	9 cut(s)	43, 78, 232, 246, 375, 408, 449, 585, 760
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	4 cut(s)	15, 295, 472, 825
DpnII	GATC	4 cut(s)	13, 293, 470, 823
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	4 cut(s)	415, 429, 592, 606
EarI	CTCTTC	4 cut(s)	415, 429, 592, 606
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco32I	GATATC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	232
Eco91I	GGTNACC	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	187
EcoRI	GAATTC	2 cut(s)	4, 82
EcoRII	CCWGG	1 cut(s)	56
EcoRV	GATATC	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	4 cut(s)	66, 90, 211, 772
FalI	AAGNNNNNCTT	6 cut(s)	397, 429, 574, 606, 798, 830
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	4 cut(s)	62, 86, 207, 768
FriOI	GRGCYC	1 cut(s)	234
GlaI	GCGC	1 cut(s)	440
GsuI	CTGGAG	2 cut(s)	651, 782
HaeIII	GGCC	2 cut(s)	78, 246
HapII	CCGG	3 cut(s)	450, 627, 644
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	1 cut(s)	441
Hin1II	CATG	4 cut(s)	66, 90, 211, 772
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HinfI	GANTC	3 cut(s)	347, 497, 691
HpaII	CCGG	3 cut(s)	450, 627, 644
HphI	GGTGA	1 cut(s)	667
Hpy166II	GTNNAC	1 cut(s)	659
Hpy188I	TCNGA	5 cut(s)	424, 462, 496, 601, 639
Hpy188III	TCNNGA	3 cut(s)	52, 536, 668
Hpy8I	GTNNAC	1 cut(s)	659
HpyCH4V	TGCA	5 cut(s)	28, 145, 269, 326, 503
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	66, 90, 211, 772
HspAI	GCGC	1 cut(s)	439
Kzo9I	GATC	4 cut(s)	13, 293, 470, 823
LguI	GCTCTTC	4 cut(s)	415, 429, 592, 606
LmnI	GCTCC	1 cut(s)	741
MaeIII	GTNAC	2 cut(s)	163, 187
MalI	GATC	4 cut(s)	15, 295, 472, 825
MboI	GATC	4 cut(s)	13, 293, 470, 823
MflI	RGATCY	2 cut(s)	293, 470
MhlI	GDGCHC	1 cut(s)	234
MlsI	TGGCCA	1 cut(s)	78
MluNI	TGGCCA	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	728
Mox20I	TGGCCA	1 cut(s)	78
MroXI	GAANNNNTTC	2 cut(s)	409, 586
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	6 cut(s)	93, 120, 455, 632, 755, 816
MslI	CAYNNNNRTG	3 cut(s)	264, 398, 575
Msp20I	TGGCCA	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	3 cut(s)	450, 627, 644
MspR9I	CCNGG	3 cut(s)	58, 627, 644
Mva1269I	GAATGC	2 cut(s)	47, 271
MvaI	CCWGG	1 cut(s)	58
MvnI	CGCG	1 cut(s)	441
NciI	CCSGG	2 cut(s)	627, 644
NdeII	GATC	4 cut(s)	13, 293, 470, 823
NlaIII	CATG	4 cut(s)	66, 90, 211, 772
NlaIV	GGNNCC	2 cut(s)	295, 472
NmuCI	GTSAC	1 cut(s)	163
OliI	CACNNNNGTG	2 cut(s)	398, 575
PciSI	GCTCTTC	4 cut(s)	415, 429, 592, 606
PctI	GAATGC	2 cut(s)	47, 271
PdmI	GAANNNNTTC	2 cut(s)	409, 586
PfeI	GAWTC	2 cut(s)	497, 691
Ple19I	CGATCG	1 cut(s)	826
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	56
PspEI	GGTNACC	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	295, 472
PsuI	RGATCY	2 cut(s)	293, 470
PvuI	CGATCG	1 cut(s)	826
PvuII	CAGCTG	1 cut(s)	43
RseI	CAYNNNNRTG	3 cut(s)	264, 398, 575
SacI	GAGCTC	1 cut(s)	234
SapI	GCTCTTC	4 cut(s)	415, 429, 592, 606
SaqAI	TTAA	6 cut(s)	93, 120, 455, 632, 755, 816
Sau3AI	GATC	4 cut(s)	13, 293, 470, 823
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	3 cut(s)	58, 627, 644
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	9 cut(s)	45, 59, 234, 377, 410, 422, 587, 599, 762
SmiMI	CAYNNNNRTG	3 cut(s)	264, 398, 575
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	56, 625, 642
TaqI	TCGA	4 cut(s)	16, 97, 284, 822
TfiI	GAWTC	2 cut(s)	497, 691
Tru1I	TTAA	6 cut(s)	93, 120, 455, 632, 755, 816
Tru9I	TTAA	6 cut(s)	93, 120, 455, 632, 755, 816
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	4 cut(s)	17, 75, 381, 558
TspGWI	ACGGA	1 cut(s)	738
TspRI	CASTG	1 cut(s)	189
XapI	RAATTY	4 cut(s)	4, 71, 82, 319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XmnI	GAANNNNTTC	2 cut(s)	409, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.