Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0011578

Physical Location & Seq

Genomic Coordinates Forward (+)

26691009 .. 26691632

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG267200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGGAAAGCAGTATTTACTGAGCTCGTAGTTGATGGCCTCAAAAACTGGCACAAGAATGCAAGACGCAGACTATCGAAGAATGGATCCTCTACTTCAAGGAAATCATCAAATTCTGCACACATTTATTCAACCGATGACTCCTCATTTACAGACAATGAATGTAGCTACAAAACTCCTAATCCCACCATAGTGAGAAGCTCTTCTTCTACCTCCGAAATAATTGAAGAGCGCGTTCCAGCCGGTTTAAGTCCGAAGAATGGATCCACTACTTCAAGGAAATCCTCCGATTCTGCACATTTTTATTCAAATGATAACTCCTCATTTCCAGACAATGAATGTAGCAACAAAAATCCTAATCCCACCATAGTGAGAAGCTCTTCTTCTACCTCCGAAATAATTGAAGAGCAAGTTCCACCCGGTTTAATTCCGAACCCGGATACTACAAGTTTACCAACTCCAGAAATCACCAGAGAGGAACAGAATCCCAACATCATCAACAAAATAATCTATGACGGAGAGATTTCTTTTGGGAGCAGTTGGAAATTAAAGCTGGAGAGCATGAGCAAGAGAAGTGGGGAAATCACTTCAATAATTGAAGACGAACTTAACTTCGATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

207

Amino Acids

22.94

Weight (kDa)

5.72

Isoelectric Point (pI)

75.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0011578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23220
malus_domestica	MD13G1140400.v1.1
prunus_persica	Prupe.3G124700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0481051
rosa_laevigata	RLG00000023425 RLG00000023429
rosa_multiflora	Rmu_sc0001551.1_g000031 Rmu_sc0001551.1_g000036
rosa_rugosa	Rorug03G0189400 Rorug03G0189900
rosa_samantha	Rh3AG240100 Rh3BG275300 Rh3BG275900 Rh3CG271000 Rh3CG271200 Rh3DG266900 Rh3DG267100 Rh3DG267200
rosa_wichuraiana	Rw3G021440 Rw3G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	234
AclWI	GGATC	4 cut(s)	81, 94, 258, 271
AcsI	RAATTY	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	8 cut(s)	99, 132, 227, 276, 309, 404, 591, 599
AleI	CACNNNNGTG	2 cut(s)	191, 368
AluBI	AGCT	5 cut(s)	25, 168, 201, 378, 553
AluI	AGCT	5 cut(s)	25, 168, 201, 378, 553
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	4 cut(s)	81, 94, 258, 271
AoxI	GGCC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	112
Asp700I	GAANNNNTTC	2 cut(s)	202, 379
AspLEI	GCGC	1 cut(s)	234
AsuC2I	CCSGG	2 cut(s)	420, 437
AsuHPI	GGTGA	1 cut(s)	460
BamHI	GGATCC	2 cut(s)	86, 263
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	27
BccI	CCATC	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	433
BcnI	CCSGG	2 cut(s)	420, 437
BfuI	GTATCC	1 cut(s)	433
Bme1390I	CCNGG	2 cut(s)	420, 437
BmiI	GGNNCC	2 cut(s)	88, 265
BmrFI	CCNGG	2 cut(s)	420, 437
BpiI	GAAGAC	1 cut(s)	606
BpmI	CTGGAG	2 cut(s)	444, 575
BpuMI	CCSGG	2 cut(s)	420, 437
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	53
BseRI	GAGGAG	2 cut(s)	133, 310
BsgI	GTGCAG	2 cut(s)	102, 279
Bsh1236I	CGCG	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	619
BshFI	GGCC	1 cut(s)	39
BsiEI	CGRYCG	1 cut(s)	619
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	3 cut(s)	243, 420, 437
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	3 cut(s)	86, 263, 616
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	13
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	88, 265
BspPI	GGATC	4 cut(s)	81, 94, 258, 271
BspQI	GCTCTTC	4 cut(s)	208, 222, 385, 399
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	242
BssMI	GATC	3 cut(s)	86, 263, 616
Bst6I	CTCTTC	4 cut(s)	208, 222, 385, 399
BstDEI	CTNAG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	3 cut(s)	89, 266, 619
BstMBI	GATC	3 cut(s)	86, 263, 616
BstMCI	CGRYCG	1 cut(s)	619
BstSCI	CCNGG	2 cut(s)	418, 435
BstUI	CGCG	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	2 cut(s)	86, 263
BstYI	RGATCY	2 cut(s)	86, 263
BsuI	GTATCC	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	39
CfoI	GCGC	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	242
CseI	GACGC	1 cut(s)	75
CspCI	CAANNNNNGTGG	2 cut(s)	556, 591
CviAII	CATG	1 cut(s)	562
CviJI	RGCY	7 cut(s)	25, 39, 168, 201, 242, 378, 553
CviKI_1	RGCY	7 cut(s)	25, 39, 168, 201, 242, 378, 553
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	3 cut(s)	88, 265, 618
DpnII	GATC	3 cut(s)	86, 263, 616
Eam1104I	CTCTTC	4 cut(s)	208, 222, 385, 399
EarI	CTCTTC	4 cut(s)	208, 222, 385, 399
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	1 cut(s)	565
FaiI	YATR	4 cut(s)	191, 368, 513, 563
FalI	AAGNNNNNCTT	6 cut(s)	190, 222, 367, 399, 591, 623
FatI	CATG	1 cut(s)	561
FriOI	GRGCYC	1 cut(s)	27
GlaI	GCGC	1 cut(s)	233
GsuI	CTGGAG	2 cut(s)	444, 575
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	3 cut(s)	243, 420, 437
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	565
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	3 cut(s)	140, 290, 484
HpaII	CCGG	3 cut(s)	243, 420, 437
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	5 cut(s)	217, 255, 289, 394, 432
Hpy188III	TCNNGA	2 cut(s)	329, 461
Hpy8I	GTNNAC	1 cut(s)	452
HpyCH4V	TGCA	3 cut(s)	62, 119, 296
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	565
HspAI	GCGC	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	86, 263, 616
LguI	GCTCTTC	4 cut(s)	208, 222, 385, 399
LmnI	GCTCC	1 cut(s)	534
LpnPI	CCDG	9 cut(s)	34, 252, 256, 342, 433, 450, 474, 484, 539
MalI	GATC	3 cut(s)	88, 265, 618
MboI	GATC	3 cut(s)	86, 263, 616
MboII	GAAGA	9 cut(s)	91, 195, 198, 239, 268, 372, 375, 416, 611
MflI	RGATCY	2 cut(s)	86, 263
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	6 cut(s)	112, 222, 399, 426, 545, 594
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	521
MnlI	CCTC	8 cut(s)	50, 100, 154, 223, 295, 331, 400, 469
MroXI	GAANNNNTTC	2 cut(s)	202, 379
MseI	TTAA	4 cut(s)	248, 425, 548, 609
MslI	CAYNNNNRTG	3 cut(s)	57, 191, 368
MspI	CCGG	3 cut(s)	243, 420, 437
MspR9I	CCNGG	2 cut(s)	420, 437
Mva1269I	GAATGC	1 cut(s)	64
MvnI	CGCG	1 cut(s)	234
NciI	CCSGG	2 cut(s)	420, 437
NdeII	GATC	3 cut(s)	86, 263, 616
NlaIII	CATG	1 cut(s)	565
NlaIV	GGNNCC	2 cut(s)	88, 265
OliI	CACNNNNGTG	2 cut(s)	191, 368
PciSI	GCTCTTC	4 cut(s)	208, 222, 385, 399
PctI	GAATGC	1 cut(s)	64
PdmI	GAANNNNTTC	2 cut(s)	202, 379
PfeI	GAWTC	2 cut(s)	290, 484
Ple19I	CGATCG	1 cut(s)	619
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
Psp124BI	GAGCTC	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	88, 265
PsuI	RGATCY	2 cut(s)	86, 263
PvuI	CGATCG	1 cut(s)	619
RseI	CAYNNNNRTG	3 cut(s)	57, 191, 368
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	4 cut(s)	208, 222, 385, 399
SaqAI	TTAA	4 cut(s)	248, 425, 548, 609
Sau3AI	GATC	3 cut(s)	86, 263, 616
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	420, 437
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	7 cut(s)	27, 170, 203, 215, 380, 392, 555
SmiMI	CAYNNNNRTG	3 cut(s)	57, 191, 368
Sse9I	AATT	6 cut(s)	112, 222, 399, 426, 545, 594
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	418, 435
TaqI	TCGA	2 cut(s)	77, 615
TasI	AATT	6 cut(s)	112, 222, 399, 426, 545, 594
TfiI	GAWTC	2 cut(s)	290, 484
Tru1I	TTAA	4 cut(s)	248, 425, 548, 609
Tru9I	TTAA	4 cut(s)	248, 425, 548, 609
TspDTI	ATGAA	2 cut(s)	174, 351
TspGWI	ACGGA	1 cut(s)	531
XapI	RAATTY	1 cut(s)	112
XmnI	GAANNNNTTC	2 cut(s)	202, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.