Rh3DG267100

MLO-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011578
Physical Location & Seq
Forward (+)
26686601 .. 26690482
3882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG267100.1

Sequence Viewer

Length: 621 bp
ATGAAGAAATGGAATGTATGGGAGGATGAGACTCGGACACTAAACTATCAGATTCTTAATGATCCAAGGAGGTTTCAACTCACTGATCAAACTCCTTTTGGGAAACGACATCTAAAGTTCTGGAGTAAACACCCTCTTCTGCTATGGCCTGCATGTTTCGCTCGGCAGTTCAGTGGCTCAATCTCAAAAGTCGATTACATGACTCTGCGAAATGGGTTCATTGTGGCCAACTGCACAGAAGGTAGCAACTTCAACTTCCTGAACTTCCTTGCCAGAGCTTTCGACGACGATTTTGAGCAAGTGGTTGGAATCAAGTTTTGGATCTGGATCTCTTCAACTATTTTCATGTTTTTCAATGCCCACGTGTTCTATAACTATTACTGGCTACCATTGATTCCCCTACTGATTGTTCTAGTCGTGGGAACAAAGCTGCAAGTCGTGATAACTAACATGTGCGTCGAGAGTTATGAGAAGGATCCTGTGATTCGAGGAAGCTTTGTTGTGAAGCTCAAAGATGGCTTATTTTGGTTCAGTCAACCCAATTGGCTTCTTCATCTTCTCCAATTTGTCCTAATCCAGGAGCTGGTTTACCAGGGATTTACCAATCTGCCGATACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

206

Amino Acids

24.45

Weight (kDa)

8.75

Isoelectric Point (pI)

29.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 1 - 194 6.2e-73 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 583
AclWI GGATC 5 cut(s) 56, 329, 335, 470, 483
AcoI YGGCCR 1 cut(s) 225
AcvI CACGTG 1 cut(s) 364
AfiI CCNNNNNNNGG 2 cut(s) 577, 583
AflIII ACRYGT 2 cut(s) 363, 450
AgsI TTSAA 4 cut(s) 77, 253, 336, 355
AjnI CCWGG 2 cut(s) 576, 591
AjuI GAANNNNNNNTTGG 2 cut(s) 301, 333
AluBI AGCT 5 cut(s) 278, 430, 495, 508, 583
AluI AGCT 5 cut(s) 278, 430, 495, 508, 583
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 5 cut(s) 56, 329, 335, 470, 483
AlwNI CAGNNNCTG 1 cut(s) 583
AoxI GGCC 2 cut(s) 146, 225
ApeKI GCWGC 1 cut(s) 430
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
BalI TGGCCA 1 cut(s) 227
BamHI GGATCC 1 cut(s) 475
BbrPI CACGTG 1 cut(s) 364
BbvI GCAGC 1 cut(s) 417
BccI CCATC 1 cut(s) 509
BciT130I CCWGG 2 cut(s) 578, 593
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 1 cut(s) 413
BisI GCNGC 1 cut(s) 431
BlsI GCNGC 1 cut(s) 432
Bme1390I CCNGG 2 cut(s) 578, 593
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 2 cut(s) 578, 593
BpmI CTGGAG 1 cut(s) 142
BsaAI YACGTR 1 cut(s) 364
BsaBI GATNNNNATC 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 65, 592
Bsc4I CCNNNNNNNGG 2 cut(s) 577, 583
Bse1I ACTGG 1 cut(s) 386
Bse8I GATNNNNATC 1 cut(s) 326
BseBI CCWGG 2 cut(s) 578, 593
BseDI CCNNGG 2 cut(s) 65, 592
BseGI GGATG 1 cut(s) 31
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 2 cut(s) 577, 583
BseNI ACTGG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 417
BsgI GTGCAG 1 cut(s) 217
BshFI GGCC 2 cut(s) 148, 227
BslI CCNNNNNNNGG 2 cut(s) 577, 583
BsmAI GTCTC 1 cut(s) 23
BsnI GGCC 2 cut(s) 148, 227
Bsp143I GATC 5 cut(s) 61, 85, 321, 327, 475
BspANI GGCC 2 cut(s) 148, 227
BspLI GGNNCC 1 cut(s) 477
BspPI GGATC 5 cut(s) 56, 329, 335, 470, 483
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 2 cut(s) 65, 592
BssMI GATC 5 cut(s) 61, 85, 321, 327, 475
BssT1I CCWWGG 1 cut(s) 65
Bst2UI CCWGG 2 cut(s) 578, 593
Bst6I CTCTTC 2 cut(s) 141, 337
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 1 cut(s) 150
BstENI CCTNNNNNAGG 1 cut(s) 575
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 5 cut(s) 64, 88, 324, 330, 478
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 5 cut(s) 61, 85, 321, 327, 475
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 2 cut(s) 578, 593
BstNSI RCATGY 2 cut(s) 156, 454
BstSCI CCNGG 2 cut(s) 576, 591
BstV1I GCAGC 1 cut(s) 417
BstX2I RGATCY 3 cut(s) 321, 327, 475
BstYI RGATCY 3 cut(s) 321, 327, 475
BsuRI GGCC 2 cut(s) 148, 227
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 2 cut(s) 81, 178
Cac8I GCNNGC 1 cut(s) 150
CaiI CAGNNNCTG 1 cut(s) 583
CseI GACGC 1 cut(s) 445
CviAII CATG 4 cut(s) 153, 199, 346, 451
DpnI GATC 5 cut(s) 63, 87, 323, 329, 477
DpnII GATC 5 cut(s) 61, 85, 321, 327, 475
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 141, 337
EarI CTCTTC 2 cut(s) 141, 337
Eco130I CCWWGG 1 cut(s) 65
Eco72I CACGTG 1 cut(s) 364
EcoNI CCTNNNNNAGG 1 cut(s) 575
EcoRII CCWGG 2 cut(s) 576, 591
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 4 cut(s) 156, 202, 349, 454
FaiI YATR 8 cut(s) 19, 145, 154, 200, 347, 372, 452, 468
FatI CATG 4 cut(s) 152, 198, 345, 450
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 431
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 431
FspBI CTAG 1 cut(s) 413
GluI GCNGC 1 cut(s) 431
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 2 cut(s) 148, 227
HgaI GACGC 1 cut(s) 445
Hin1II CATG 4 cut(s) 156, 202, 349, 454
HincII GTYRAC 1 cut(s) 536
HindII GTYRAC 1 cut(s) 536
HindIII AAGCTT 1 cut(s) 493
HinfI GANTC 6 cut(s) 31, 52, 202, 309, 394, 484
Hpy166II GTNNAC 3 cut(s) 128, 536, 589
Hpy188I TCNGA 2 cut(s) 36, 51
Hpy188III TCNNGA 5 cut(s) 121, 259, 325, 439, 460
Hpy8I GTNNAC 3 cut(s) 128, 536, 589
Hpy99I CGWCG 3 cut(s) 287, 290, 461
HpyAV CCTTC 2 cut(s) 233, 466
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 3 cut(s) 152, 234, 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 4 cut(s) 156, 202, 349, 454
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 5 cut(s) 61, 85, 321, 327, 475
LmnI GCTCC 1 cut(s) 580
Lsp1109I GCAGC 1 cut(s) 417
MaeI CTAG 1 cut(s) 413
MaeII ACGT 1 cut(s) 363
MalI GATC 5 cut(s) 63, 87, 323, 329, 477
MboI GATC 5 cut(s) 61, 85, 321, 327, 475
MboII GAAGA 5 cut(s) 16, 128, 324, 542, 548
MfeI CAATTG 1 cut(s) 541
MflI RGATCY 3 cut(s) 321, 327, 475
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 2 cut(s) 541, 563
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 2 cut(s) 25, 196
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 4 cut(s) 16, 63, 144, 482
Mox20I TGGCCA 1 cut(s) 227
MscI TGGCCA 1 cut(s) 227
MseI TTAA 2 cut(s) 57, 619
Msp20I TGGCCA 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 578, 593
MunI CAATTG 1 cut(s) 541
MvaI CCWGG 2 cut(s) 578, 593
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 5 cut(s) 61, 85, 321, 327, 475
NlaIII CATG 4 cut(s) 156, 202, 349, 454
NlaIV GGNNCC 1 cut(s) 477
NmeAIII GCCGAG 1 cut(s) 142
NspI RCATGY 2 cut(s) 156, 454
PciI ACATGT 1 cut(s) 450
PfeI GAWTC 4 cut(s) 52, 309, 394, 484
PflMI CCANNNNNTGG 1 cut(s) 583
PfoI TCCNGGA 1 cut(s) 576
PkrI GCNGC 1 cut(s) 432
PleI GAGTC 2 cut(s) 25, 196
PmaCI CACGTG 1 cut(s) 364
PmlI CACGTG 1 cut(s) 364
PpsI GAGTC 2 cut(s) 25, 196
Ppu21I YACGTR 1 cut(s) 364
PscI ACATGT 1 cut(s) 450
Psp6I CCWGG 2 cut(s) 576, 591
PspCI CACGTG 1 cut(s) 364
PspGI CCWGG 2 cut(s) 576, 591
PspN4I GGNNCC 1 cut(s) 477
PstNI CAGNNNCTG 1 cut(s) 583
PsuI RGATCY 3 cut(s) 321, 327, 475
SaqAI TTAA 2 cut(s) 57, 619
SatI GCNGC 1 cut(s) 431
Sau3AI GATC 5 cut(s) 61, 85, 321, 327, 475
SchI GAGTC 2 cut(s) 25, 196
ScrFI CCNGG 2 cut(s) 578, 593
SetI ASST 9 cut(s) 74, 244, 280, 366, 432, 497, 510, 585, 619
Sse9I AATT 2 cut(s) 541, 563
SspMI CTAG 1 cut(s) 413
StyD4I CCNGG 2 cut(s) 576, 591
StyI CCWWGG 1 cut(s) 65
TaiI ACGT 1 cut(s) 366
TaqI TCGA 4 cut(s) 192, 282, 459, 487
TasI AATT 2 cut(s) 541, 563
TfiI GAWTC 4 cut(s) 52, 309, 394, 484
Tru1I TTAA 2 cut(s) 57, 619
Tru9I TTAA 2 cut(s) 57, 619
TscAI CASTG 2 cut(s) 88, 178
TseI GCWGC 1 cut(s) 430
TspDTI ATGAA 4 cut(s) 17, 208, 334, 542
TspRI CASTG 2 cut(s) 88, 178
Van91I CCANNNNNTGG 1 cut(s) 583
XagI CCTNNNNNAGG 1 cut(s) 575
XceI RCATGY 2 cut(s) 156, 454
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.