RLG00000023540

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014867
Physical Location & Seq
Forward (+)
25065248 .. 25066449
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023540

Sequence Viewer

Length: 336 bp
ATGGACGGAGATCCATCCCACCTGACTGAATATAATCAAATGTGGTACAATCGCCAGCCGTCGCTGTCCCCAAATGTCAGCTACGAAAACGACGACGTTTCGATCAATGACATGTCTGTGGCTTTTCCAGCGGGGTCGAATTTGATGTCGAAGATGAGTGGGAACCAGACGGCGGGGCTGAAGGAGATGGAGAGCAGCTACGAGAGGGTTTTGGATGAGAATTGTAGGGTTTTCAGTGAGTATTTCAGGGAGGTTTTGGAGAATAAAGATGGAGGAAGAGTGATTGATCCACCGGCCATGGTATTGGAATTGAGTGAAGGAAGTGATGAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box WD40

Protein Analysis

112

Amino Acids

12.54

Weight (kDa)

4.16

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 131, 173
AclWI GGATC 2 cut(s) 5, 281
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 172
AflIII ACRYGT 1 cut(s) 111
AluBI AGCT 2 cut(s) 81, 198
AluI AGCT 2 cut(s) 81, 198
AlwI GGATC 2 cut(s) 5, 281
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 195
ApoI RAATTY 1 cut(s) 139
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
BbvI GCAGC 1 cut(s) 207
BccI CCATC 3 cut(s) 22, 181, 263
BceAI ACGGC 2 cut(s) 43, 186
BfaI CTAG 1 cut(s) 334
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse118I RCCGGY 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 2 cut(s) 14, 220
BseLI CCNNNNNNNGG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 207
BshFI GGCC 1 cut(s) 296
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 1 cut(s) 296
Bsp143I GATC 3 cut(s) 10, 102, 286
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 2 cut(s) 131, 173
BspANI GGCC 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 164
BspPI GGATC 2 cut(s) 5, 281
BsrFI RCCGGY 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 3 cut(s) 10, 102, 286
BssT1I CCWWGG 1 cut(s) 297
Bst6I CTCTTC 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 56
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 2 cut(s) 14, 220
BstKTI GATC 3 cut(s) 13, 105, 289
BstMBI GATC 3 cut(s) 10, 102, 286
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 2 cut(s) 14, 220
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 292
Csp6I GTAC 1 cut(s) 46
CviAII CATG 2 cut(s) 112, 298
CviJI RGCY 6 cut(s) 58, 81, 122, 178, 198, 296
CviKI_1 RGCY 6 cut(s) 58, 81, 122, 178, 198, 296
CviQI GTAC 1 cut(s) 46
DpnI GATC 3 cut(s) 12, 104, 288
DpnII GATC 3 cut(s) 10, 102, 286
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 115, 301
FaiI YATR 3 cut(s) 33, 113, 299
FaqI GGGAC 1 cut(s) 52
FatI CATG 2 cut(s) 111, 297
FauI CCCGC 2 cut(s) 124, 166
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 1 cut(s) 334
GluI GCNGC 1 cut(s) 196
HaeIII GGCC 1 cut(s) 296
HapII CCGG 1 cut(s) 293
Hin1II CATG 2 cut(s) 115, 301
HpaII CCGG 1 cut(s) 293
Hpy99I CGWCG 3 cut(s) 64, 95, 98
HpyAV CCTTC 2 cut(s) 175, 311
HpyCH4IV ACGT 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 2 cut(s) 115, 301
Kzo9I GATC 3 cut(s) 10, 102, 286
LpnPI CCDG 6 cut(s) 35, 68, 141, 179, 232, 306
Lsp1109I GCAGC 1 cut(s) 207
MaeI CTAG 1 cut(s) 334
MaeII ACGT 1 cut(s) 96
MalI GATC 3 cut(s) 12, 104, 288
MboI GATC 3 cut(s) 10, 102, 286
MboII GAAGA 2 cut(s) 163, 288
MflI RGATCY 1 cut(s) 10
MluCI AATT 3 cut(s) 139, 220, 308
MnlI CCTC 3 cut(s) 198, 244, 266
MslI CAYNNNNRTG 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 128
NcoI CCATGG 1 cut(s) 297
NdeII GATC 3 cut(s) 10, 102, 286
NlaIII CATG 2 cut(s) 115, 301
NlaIV GGNNCC 1 cut(s) 164
NspI RCATGY 1 cut(s) 115
PciI ACATGT 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PkrI GCNGC 1 cut(s) 197
PscI ACATGT 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 164
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 116
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 3 cut(s) 10, 102, 286
SetI ASST 5 cut(s) 24, 83, 99, 200, 255
SmiMI CAYNNNNRTG 1 cut(s) 116
Sse9I AATT 3 cut(s) 139, 220, 308
SsiI CCGC 2 cut(s) 131, 173
SspMI CTAG 1 cut(s) 334
StyI CCWWGG 1 cut(s) 297
TaiI ACGT 1 cut(s) 99
TaqI TCGA 3 cut(s) 101, 137, 149
TasI AATT 3 cut(s) 139, 220, 308
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 1 cut(s) 241
XapI RAATTY 1 cut(s) 139
XceI RCATGY 1 cut(s) 115
XspI CTAG 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.