Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0014867

Physical Location & Seq

Genomic Coordinates Reverse (-)

44119592 .. 44119852

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG267400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGTCGGTGGCTTTTCCGGCGGGGTCGAATTCGCTGTCGACGATAAGTGGGAACCAGACGGCGGGGCTGAAGGAGATGGAGAGCAGCTACGAGAGGGTTTTGGATGAAAATTGTAGGGTTTTCAGTGAGTATTTCAGGGAGGTTTTAGAGAATAAAGATGGAGGAAGAGTGATTGATCCACCGGCCGTGGTGTTGGAATTGAGTGAAGGAAGTGATGAGTTCTGGTATGATGATCGGAGCACTGGAGAAGATGAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box WD40

Protein Analysis

86

Amino Acids

9.52

Weight (kDa)

4.08

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014867)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007876 RLG00000008120 RLG00000023540
rosa_multiflora	Rmu_sc0000580.1_g000127 Rmu_sc0000898.1_g000092 Rmu_sc0001192.1_g000031 Rmu_sc0001955.1_g000036 Rmu_sc0003214.1_g000010 Rmu_sc0011910.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043220 Rroxscaffold_2G00138050 Rroxscaffold_3G00261050 Rroxscaffold_3G00262520 Rroxscaffold_5G00347700 Rroxscaffold_5G00362210
rosa_samantha	Rh3DG312600 Rh4BG267400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	38
AciI	CCGC	2 cut(s)	20, 62
AclWI	GGATC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	61
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
Alw21I	GWGCWC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	28
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	2 cut(s)	70, 152
BceAI	ACGGC	2 cut(s)	75, 170
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	247
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	242
BsiSI	CCGG	2 cut(s)	17, 182
BslI	CCNNNNNNNGG	1 cut(s)	61
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	175, 232
BspACI	CCGC	2 cut(s)	20, 62
BspANI	GGCC	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	175, 232
Bst6I	CTCTTC	1 cut(s)	160
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	2 cut(s)	178, 235
BstMBI	GATC	2 cut(s)	175, 232
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	96
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	130, 240
Cfr10I	RCCGGY	1 cut(s)	181
CviJI	RGCY	4 cut(s)	11, 67, 87, 185
CviKI_1	RGCY	4 cut(s)	11, 67, 87, 185
DpnI	GATC	2 cut(s)	177, 234
DpnII	GATC	2 cut(s)	175, 232
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
EclXI	CGGCCG	1 cut(s)	183
Eco52I	CGGCCG	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	89
EcoRI	GAATTC	1 cut(s)	28
FaiI	YATR	1 cut(s)	228
FauI	CCCGC	2 cut(s)	13, 55
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	2 cut(s)	17, 182
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HpaII	CCGG	2 cut(s)	17, 182
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	237
Hpy8I	GTNNAC	1 cut(s)	39
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	64, 200, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
Kzo9I	GATC	2 cut(s)	175, 232
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	6 cut(s)	30, 68, 121, 195, 208, 228
Lsp1109I	GCAGC	1 cut(s)	96
MalI	GATC	2 cut(s)	177, 234
MboI	GATC	2 cut(s)	175, 232
MboII	GAAGA	2 cut(s)	177, 260
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	3 cut(s)	28, 109, 197
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	3 cut(s)	87, 133, 155
MspI	CCGG	2 cut(s)	17, 182
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeII	GATC	2 cut(s)	175, 232
NlaIV	GGNNCC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	53
SalI	GTCGAC	1 cut(s)	37
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	2 cut(s)	175, 232
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	2 cut(s)	89, 144
Sse9I	AATT	3 cut(s)	28, 109, 197
SsiI	CCGC	2 cut(s)	20, 62
TaqI	TCGA	2 cut(s)	26, 38
TasI	AATT	3 cut(s)	28, 109, 197
TscAI	CASTG	2 cut(s)	130, 247
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	1 cut(s)	120
TspRI	CASTG	2 cut(s)	130, 247
XapI	RAATTY	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.