Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000898.1

Orthogroup ID

OG0014867

Physical Location & Seq

Genomic Coordinates Forward (+)

423498 .. 424082

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000898.1_g000092.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgactattatactttctctcccccccccctctctctctctctctctaccccaagcggaggcaatccaatccctctctgccatcctcctctccctcatctacggcctctgccgccgctcgatcgacgcagccgtctgcatccccaagatcttccgatctgagtcggcgcttgcccagacggaattggctccagtgctgttcgaggagctcttcctcatccacctcctcctggttctccaatggtacaatcaccggcgatcggagattctgccatcgctgtccccaaatgtcagctatgaaaacgacgacgtttcaatcaacgacatgtcggtggcttttgcggcggggtcgaattcgctgtcgaagatgagtgggaaccagatggcggggttgaaggagatggacagcagctacgagagggttttggatgagaattgtagggttttcagtgagtatttcagggaggttttggagaataaagatggaggaaaagtgattgatccaccggccgtggtgttggaattgagtgaaggaagtgatgagttccggtatgatgatcggagcaccgaagaagatgaagcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box WD40

Protein Analysis

194

Amino Acids

21.58

Weight (kDa)

4.39

Isoelectric Point (pI)

65.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014867)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007876 RLG00000008120 RLG00000023540
rosa_multiflora	Rmu_sc0000580.1_g000127 Rmu_sc0000898.1_g000092 Rmu_sc0001192.1_g000031 Rmu_sc0001955.1_g000036 Rmu_sc0003214.1_g000010 Rmu_sc0011910.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043220 Rroxscaffold_2G00138050 Rroxscaffold_3G00261050 Rroxscaffold_3G00262520 Rroxscaffold_5G00347700 Rroxscaffold_5G00362210
rosa_samantha	Rh3DG312600 Rh4BG267400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AccBSI	CCGCTC	1 cut(s)	117
AciI	CCGC	6 cut(s)	56, 112, 115, 341, 344, 386
AclWI	GGATC	1 cut(s)	494
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	1 cut(s)	352
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	4 cut(s)	58, 229, 259, 385
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	315, 394
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	3 cut(s)	208, 294, 411
AluI	AGCT	3 cut(s)	208, 294, 411
Alw21I	GWGCWC	2 cut(s)	210, 566
AlwI	GGATC	1 cut(s)	494
AoxI	GGCC	2 cut(s)	103, 507
ApeKI	GCWGC	2 cut(s)	128, 408
ApoI	RAATTY	1 cut(s)	352
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AspLEI	GCGC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	210
Bbv12I	GWGCWC	2 cut(s)	210, 566
BbvI	GCAGC	2 cut(s)	140, 420
BccI	CCATC	5 cut(s)	89, 280, 376, 394, 476
BceAI	ACGGC	3 cut(s)	116, 118, 494
BciT130I	CCWGG	1 cut(s)	230
BfoI	RGCGCY	1 cut(s)	170
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	5 cut(s)	112, 115, 129, 342, 409
BlsI	GCNGC	5 cut(s)	113, 116, 130, 343, 410
Bme1390I	CCNGG	1 cut(s)	230
BmiI	GGNNCC	2 cut(s)	189, 377
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	510
BsaWI	WCCGGW	1 cut(s)	546
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 477, 507
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 229, 259, 385
Bse118I	RCCGGY	2 cut(s)	252, 505
Bse1I	ACTGG	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	4 cut(s)	81, 138, 216, 433
BseLI	CCNNNNNNNGG	4 cut(s)	58, 229, 259, 385
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	3 cut(s)	77, 215, 218
BseX3I	CGGCCG	1 cut(s)	507
BseXI	GCAGC	2 cut(s)	140, 420
Bsh1285I	CGRYCG	3 cut(s)	123, 260, 510
BshFI	GGCC	2 cut(s)	105, 509
BsiEI	CGRYCG	3 cut(s)	123, 260, 510
BsiHKAI	GWGCWC	2 cut(s)	210, 566
BsiSI	CCGG	3 cut(s)	253, 506, 547
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	4 cut(s)	58, 229, 259, 385
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	105, 509
Bsp1286I	GDGCHC	2 cut(s)	210, 566
Bsp143I	GATC	6 cut(s)	120, 147, 155, 257, 499, 556
BspACI	CCGC	6 cut(s)	56, 112, 115, 341, 344, 386
BspANI	GGCC	2 cut(s)	105, 509
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	189, 377
BspPI	GGATC	1 cut(s)	494
BspQI	GCTCTTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	117
BsrFI	RCCGGY	2 cut(s)	252, 505
BsrI	ACTGG	1 cut(s)	191
BssAI	RCCGGY	2 cut(s)	252, 505
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	6 cut(s)	120, 147, 155, 257, 499, 556
Bst2UI	CCWGG	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	510
BstF5I	GGATG	4 cut(s)	81, 138, 216, 433
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	6 cut(s)	123, 150, 158, 260, 502, 559
BstMBI	GATC	6 cut(s)	120, 147, 155, 257, 499, 556
BstMCI	CGRYCG	3 cut(s)	123, 260, 510
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 341
BstNI	CCWGG	1 cut(s)	230
BstNSI	RCATGY	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	140, 420
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BstZI	CGGCCG	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	105, 509
BtgI	CCRYGG	1 cut(s)	510
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	4 cut(s)	81, 138, 216, 433
BtsIMutI	CAGTG	2 cut(s)	198, 454
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	1 cut(s)	169
Cfr10I	RCCGGY	2 cut(s)	252, 505
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	325
CviJI	RGCY	8 cut(s)	105, 131, 188, 208, 294, 335, 411, 509
CviKI_1	RGCY	8 cut(s)	105, 131, 188, 208, 294, 335, 411, 509
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	6 cut(s)	122, 149, 157, 259, 501, 558
DpnII	GATC	6 cut(s)	120, 147, 155, 257, 499, 556
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	507
EagI	CGGCCG	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Ecl136II	GAGCTC	1 cut(s)	208
EclXI	CGGCCG	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	210
Eco52I	CGGCCG	1 cut(s)	507
Eco53kI	GAGCTC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	1 cut(s)	328
FaiI	YATR	4 cut(s)	11, 297, 326, 552
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	1 cut(s)	324
FauI	CCCGC	2 cut(s)	337, 379
Fnu4HI	GCNGC	5 cut(s)	112, 115, 129, 342, 409
FokI	GGATG	4 cut(s)	68, 125, 203, 440
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	5 cut(s)	112, 115, 129, 342, 409
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	5 cut(s)	112, 115, 129, 342, 409
GsuI	CTGGAG	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	105, 509
HapII	CCGG	3 cut(s)	253, 506, 547
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	328
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	2 cut(s)	161, 265
HpaII	CCGG	3 cut(s)	253, 506, 547
HphI	GGTGA	1 cut(s)	242
Hpy188I	TCNGA	4 cut(s)	155, 160, 262, 561
Hpy99I	CGWCG	3 cut(s)	128, 308, 311
HpyAV	CCTTC	2 cut(s)	388, 524
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 341
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	328
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	6 cut(s)	120, 147, 155, 257, 499, 556
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	3 cut(s)	193, 205, 561
LpnPI	CCDG	9 cut(s)	188, 204, 215, 242, 266, 392, 445, 519, 560
Lsp1109I	GCAGC	2 cut(s)	140, 420
LweI	GCATC	1 cut(s)	147
MaeII	ACGT	1 cut(s)	309
MalI	GATC	6 cut(s)	122, 149, 157, 259, 501, 558
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	6 cut(s)	120, 147, 155, 257, 499, 556
MboII	GAAGA	5 cut(s)	142, 202, 376, 581, 584
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	2 cut(s)	210, 566
MluCI	AATT	4 cut(s)	182, 352, 433, 521
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	498
MslI	CAYNNNNRTG	1 cut(s)	329
MspI	CCGG	3 cut(s)	253, 506, 547
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	111, 341
NdeII	GATC	6 cut(s)	120, 147, 155, 257, 499, 556
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	2 cut(s)	189, 377
NspI	RCATGY	1 cut(s)	328
PciI	ACATGT	1 cut(s)	324
PciSI	GCTCTTC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	5 cut(s)	113, 116, 130, 343, 410
Ple19I	CGATCG	2 cut(s)	123, 260
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PscI	ACATGT	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	189, 377
PsuI	RGATCY	1 cut(s)	147
PvuI	CGATCG	2 cut(s)	123, 260
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	329
SacI	GAGCTC	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	215
SatI	GCNGC	5 cut(s)	112, 115, 129, 342, 409
Sau3AI	GATC	6 cut(s)	120, 147, 155, 257, 499, 556
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	2 cut(s)	210, 566
SetI	ASST	6 cut(s)	210, 225, 296, 312, 413, 468
SfaNI	GCATC	1 cut(s)	147
SgrAI	CRCCGGYG	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	4 cut(s)	182, 352, 433, 521
SsiI	CCGC	6 cut(s)	56, 112, 115, 341, 344, 386
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	228
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	5 cut(s)	119, 123, 201, 350, 362
TasI	AATT	4 cut(s)	182, 352, 433, 521
TauI	GCSGC	3 cut(s)	114, 117, 344
TfiI	GAWTC	1 cut(s)	265
TscAI	CASTG	2 cut(s)	198, 454
TseI	GCWGC	2 cut(s)	128, 408
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	198, 454
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.