Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014867

Physical Location & Seq

Genomic Coordinates Forward (+)

43083825 .. 43097220

Gene Structure 13396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGTCCACTTATAAGTGGGTATGGTCAGCTTTGGCTAATTATACATGGAGCTGCGATGAGGCAAGCGTCATAGGCCCCATACCCATTTGTCGAACTAATGAAGTGTCTACAACACCTAGTTCATCTCTGGTGAGAGACTGCAACCAGATTCCGTCAGAAAAACTCATAAACTTGGGATCAAACCTAGGCCAATCCAAACAAATATTGGTCTCGAAAGGCCACCCTCCTTCTAACAATGCAATAAAGAAGAAACAGAGGAGAAAACATGAAAGATCTGATGCCATGAAAGGCAAAATGGTGAAAGATTCTAATGATTCTCAGGCCAAGGATGAAGATGATGAATATTCTAGCCTGATGCATGATTCTTTCATCGAATCAATGATTTACCAGACTGGAAGATCGATGGATTTAACACTAAAACTTAGTTTACCGTCTACCCAGGATGATCACAACAACGATCATCCTCTAGCTCCTCAGCTCATCAATGCACCTGGTTTTTCCAATATTACTCAGAGATCTTTGGAAGTTGAATGTGGAGATCAAGACGAAGATGGAGATATTGACGATACCAGAGAGGCCCATTCATCGATTCATCGATTTATCAGAGATCGACGCGGCCGTTTGCATCCCCGAGATCTTTCTATCCGAGCCGGCGCTCGTCCAAACGGAATTGGATCCGTGCTGTTTGAGGAGCTCTTCCTCATCCACCTCCTCCTAGTTCTCCGGTGGTACAATCACCGCGATCGCAGATTCTCGCCGTCGCCGTCCCCAAATGTCGCCTACCAAAATGACTATGTTTCGATCAACGACATGTCGGTGGCTTTTCCGGCGGGGTCGAATTCGCCGTCGAAGATGAGTGGGAACCAAACAGAGGGGCTGAAGGAGATGGAGAGCAGCTACGCAAGGGTTTTGGATGAGAATTGTAGGGTTTTCGGTGAGTATTTCGTGGAGGTTTTGGAGAATAAAGATGGAGGAAGAGTGATTGATCCACCGGCCGTAGTGTTGGAATTGAGTGAAGGAAGTGATGAGTTCCGGTATGATAATCGGAGCACCGGAGAAGATGAAGGGCGGTGGGTGTTGGGATTTGAAGGCTACGATATTAGGGTTTTAGGTGGTGGTATCACCACCAAACTATTGGTGGTGAGCAAATTTGAATCCGAGTTGGTTACAATAAGCTGGACAACCGAACAAGTCATCGTTTACCCGTATCTATTCGATTGCCTATTCAAATATTGTTGTAAGTTTGTGGAGGGCAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCATATATATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box WD40

Protein Analysis

456

Amino Acids

51.11

Weight (kDa)

5.33

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014867)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007876 RLG00000008120 RLG00000023540
rosa_multiflora	Rmu_sc0000580.1_g000127 Rmu_sc0000898.1_g000092 Rmu_sc0001192.1_g000031 Rmu_sc0001955.1_g000036 Rmu_sc0003214.1_g000010 Rmu_sc0011910.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043220 Rroxscaffold_2G00138050 Rroxscaffold_3G00261050 Rroxscaffold_3G00262520 Rroxscaffold_5G00347700 Rroxscaffold_5G00362210
rosa_samantha	Rh3DG312600 Rh4BG267400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AccI	GTMKAC	2 cut(s)	107, 434
AccII	CGCG	2 cut(s)	615, 741
AciI	CCGC	4 cut(s)	615, 739, 830, 1069
AclWI	GGATC	4 cut(s)	184, 669, 682, 980
AcoI	YGGCCR	2 cut(s)	616, 993
AcsI	RAATTY	2 cut(s)	838, 1148
AcuI	CTGAAG	1 cut(s)	899
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	1 cut(s)	871
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	4 cut(s)	530, 1088, 1154, 1228
AjnI	CCWGG	2 cut(s)	438, 490
AluBI	AGCT	8 cut(s)	29, 51, 470, 478, 694, 897, 1176, 1258
AluI	AGCT	8 cut(s)	29, 51, 470, 478, 694, 897, 1176, 1258
Alw21I	GWGCWC	2 cut(s)	696, 1052
Alw26I	GTCTC	2 cut(s)	129, 214
AlwI	GGATC	4 cut(s)	184, 669, 682, 980
Ama87I	CYCGRG	1 cut(s)	630
AoxI	GGCC	7 cut(s)	73, 187, 217, 321, 576, 616, 993
ApeKI	GCWGC	2 cut(s)	51, 894
ApoI	RAATTY	2 cut(s)	838, 1148
ArsI	GACNNNNNNTTYG	2 cut(s)	830, 862
AsiSI	GCGATCGC	1 cut(s)	745
AspA2I	CCTAGG	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	656
AspS9I	GGNCC	2 cut(s)	74, 577
AsuHPI	GGTGA	6 cut(s)	142, 310, 728, 947, 1114, 1153
AvaI	CYCGRG	1 cut(s)	630
AvrII	CCTAGG	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	696
Bbv12I	GWGCWC	2 cut(s)	696, 1052
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	38, 906
BccI	CCATC	4 cut(s)	397, 545, 880, 962
BceAI	ACGGC	5 cut(s)	603, 742, 748, 829, 980
BciT130I	CCWGG	2 cut(s)	440, 492
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	2 cut(s)	129, 214
BfaI	CTAG	5 cut(s)	117, 185, 348, 467, 716
BfoI	RGCGCY	1 cut(s)	657
BglII	AGATCT	3 cut(s)	272, 515, 634
BisI	GCNGC	3 cut(s)	52, 616, 895
BlnI	CCTAGG	1 cut(s)	184
BlsI	GCNGC	3 cut(s)	53, 617, 896
Bme1390I	CCNGG	2 cut(s)	440, 492
BmeT110I	CYCGRG	1 cut(s)	630
BmgT120I	GGNCC	2 cut(s)	74, 577
BmiI	GGNNCC	3 cut(s)	76, 676, 863
BmrFI	CCNGG	2 cut(s)	440, 492
BmsI	GCATC	3 cut(s)	268, 345, 634
Bpu10I	CCTNAGC	1 cut(s)	474
Bsa29I	ATCGAT	3 cut(s)	401, 587, 595
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	3 cut(s)	184, 324, 438
BsaWI	WCCGGW	3 cut(s)	723, 1032, 1052
BsaXI	ACNNNNNCTCC	2 cut(s)	963, 993
Bsc4I	CCNNNNNNNGG	1 cut(s)	871
Bse118I	RCCGGY	2 cut(s)	650, 991
Bse1I	ACTGG	1 cut(s)	397
BseBI	CCWGG	2 cut(s)	440, 492
BseCI	ATCGAT	3 cut(s)	401, 587, 595
BseDI	CCNNGG	3 cut(s)	184, 324, 438
BseGI	GGATG	6 cut(s)	334, 448, 460, 625, 702, 919
BseLI	CCNNNNNNNGG	1 cut(s)	871
BseMII	CTCAG	3 cut(s)	332, 488, 524
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	4 cut(s)	271, 462, 701, 704
BseX3I	CGGCCG	2 cut(s)	616, 993
BseXI	GCAGC	2 cut(s)	38, 906
Bsh1236I	CGCG	2 cut(s)	615, 741
Bsh1285I	CGRYCG	3 cut(s)	619, 745, 996
BshFI	GGCC	7 cut(s)	75, 189, 219, 323, 578, 618, 995
BshVI	ATCGAT	3 cut(s)	401, 587, 595
BsiEI	CGRYCG	3 cut(s)	619, 745, 996
BsiHKAI	GWGCWC	2 cut(s)	696, 1052
BsiHKCI	CYCGRG	1 cut(s)	630
BsiSI	CCGG	6 cut(s)	651, 724, 827, 992, 1033, 1053
BslFI	GGGAC	1 cut(s)	751
BslI	CCNNNNNNNGG	1 cut(s)	871
BsmAI	GTCTC	2 cut(s)	129, 214
BsmFI	GGGAC	1 cut(s)	751
BsnI	GGCC	7 cut(s)	75, 189, 219, 323, 578, 618, 995
Bso31I	GGTCTC	1 cut(s)	214
BsoBI	CYCGRG	1 cut(s)	630
Bsp1286I	GDGCHC	2 cut(s)	696, 1052
BspACI	CCGC	4 cut(s)	615, 739, 830, 1069
BspANI	GGCC	7 cut(s)	75, 189, 219, 323, 578, 618, 995
BspCNI	CTCAG	3 cut(s)	331, 487, 523
BspDI	ATCGAT	3 cut(s)	401, 587, 595
BspFNI	CGCG	2 cut(s)	615, 741
BspLI	GGNNCC	3 cut(s)	76, 676, 863
BspPI	GGATC	4 cut(s)	184, 669, 682, 980
BspQI	GCTCTTC	1 cut(s)	701
BspTNI	GGTCTC	1 cut(s)	214
BsrFI	RCCGGY	2 cut(s)	650, 991
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	2 cut(s)	650, 991
BssECI	CCNNGG	3 cut(s)	184, 324, 438
BssT1I	CCWWGG	2 cut(s)	184, 324
Bst2UI	CCWGG	2 cut(s)	440, 492
Bst4CI	ACNGT	1 cut(s)	432
Bst6I	CTCTTC	2 cut(s)	701, 970
BstC8I	GCNNGC	3 cut(s)	64, 652, 1256
BstDEI	CTNAG	4 cut(s)	318, 422, 474, 510
BstF5I	GGATG	6 cut(s)	334, 448, 460, 625, 702, 919
BstFNI	CGCG	2 cut(s)	615, 741
BstH2I	RGCGCY	1 cut(s)	657
BstHHI	GCGC	1 cut(s)	656
BstMAI	GTCTC	2 cut(s)	129, 214
BstMCI	CGRYCG	3 cut(s)	619, 745, 996
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 827
BstNI	CCWGG	2 cut(s)	440, 492
BstNSI	RCATGY	1 cut(s)	814
BstSCI	CCNGG	2 cut(s)	438, 490
BstUI	CGCG	2 cut(s)	615, 741
BstV1I	GCAGC	2 cut(s)	38, 906
BstX2I	RGATCY	4 cut(s)	272, 515, 634, 674
BstXI	CCANNNNNNTGG	1 cut(s)	1135
BstYI	RGATCY	4 cut(s)	272, 515, 634, 674
BstZI	CGGCCG	2 cut(s)	616, 993
Bsu15I	ATCGAT	3 cut(s)	401, 587, 595
BsuRI	GGCC	7 cut(s)	75, 189, 219, 323, 578, 618, 995
BsuTUI	ATCGAT	3 cut(s)	401, 587, 595
BtgZI	GCGATG	1 cut(s)	69
BtsCI	GGATG	6 cut(s)	334, 448, 460, 625, 702, 919
Cac8I	GCNNGC	3 cut(s)	64, 652, 1256
CfoI	GCGC	1 cut(s)	656
Cfr10I	RCCGGY	2 cut(s)	650, 991
Cfr13I	GGNCC	2 cut(s)	74, 577
ClaI	ATCGAT	3 cut(s)	401, 587, 595
CseI	GACGC	2 cut(s)	55, 621
CsiI	ACCWGGT	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	730
CviAII	CATG	5 cut(s)	45, 266, 283, 359, 811
CviQI	GTAC	1 cut(s)	730
DdeI	CTNAG	4 cut(s)	318, 422, 474, 510
EaeI	YGGCCR	2 cut(s)	616, 993
EagI	CGGCCG	2 cut(s)	616, 993
Eam1104I	CTCTTC	2 cut(s)	701, 970
EarI	CTCTTC	2 cut(s)	701, 970
Ecl136II	GAGCTC	1 cut(s)	694
EclXI	CGGCCG	2 cut(s)	616, 993
Eco130I	CCWWGG	2 cut(s)	184, 324
Eco24I	GRGCYC	1 cut(s)	696
Eco31I	GGTCTC	1 cut(s)	214
Eco52I	CGGCCG	2 cut(s)	616, 993
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	899
Eco88I	CYCGRG	1 cut(s)	630
EcoICRI	GAGCTC	1 cut(s)	694
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	838
EcoRII	CCWGG	2 cut(s)	438, 490
EcoT14I	CCWWGG	2 cut(s)	184, 324
EcoT22I	ATGCAT	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	696
ErhI	CCWWGG	2 cut(s)	184, 324
FaeI	CATG	5 cut(s)	48, 269, 286, 362, 814
FaqI	GGGAC	1 cut(s)	751
FatI	CATG	5 cut(s)	44, 265, 282, 358, 810
FauI	CCCGC	1 cut(s)	823
FbaI	TGATCA	1 cut(s)	445
FblI	GTMKAC	2 cut(s)	107, 434
Fnu4HI	GCNGC	3 cut(s)	52, 616, 895
FokI	GGATG	6 cut(s)	341, 447, 455, 612, 689, 926
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	3 cut(s)	52, 616, 895
FspBI	CTAG	5 cut(s)	117, 185, 348, 467, 716
GlaI	GCGC	1 cut(s)	655
GluI	GCNGC	3 cut(s)	52, 616, 895
HaeII	RGCGCY	1 cut(s)	657
HaeIII	GGCC	7 cut(s)	75, 189, 219, 323, 578, 618, 995
HapII	CCGG	6 cut(s)	651, 724, 827, 992, 1033, 1053
HgaI	GACGC	2 cut(s)	55, 621
HhaI	GCGC	1 cut(s)	656
Hin1II	CATG	5 cut(s)	48, 269, 286, 362, 814
Hin6I	GCGC	1 cut(s)	654
HinP1I	GCGC	1 cut(s)	654
HinfI	GANTC	8 cut(s)	148, 305, 314, 362, 374, 589, 750, 1154
HpaII	CCGG	6 cut(s)	651, 724, 827, 992, 1033, 1053
HphI	GGTGA	6 cut(s)	142, 310, 728, 947, 1114, 1153
Hpy166II	GTNNAC	5 cut(s)	6, 108, 428, 435, 1201
Hpy188I	TCNGA	7 cut(s)	157, 277, 513, 605, 647, 1047, 1159
Hpy188III	TCNNGA	2 cut(s)	211, 542
Hpy8I	GTNNAC	5 cut(s)	6, 108, 428, 435, 1201
Hpy99I	CGWCG	3 cut(s)	615, 763, 850
HpyAV	CCTTC	5 cut(s)	237, 874, 1010, 1058, 1082
HpyCH4III	ACNGT	1 cut(s)	432
HpyCH4V	TGCA	5 cut(s)	141, 239, 358, 488, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 827
HpyF3I	CTNAG	4 cut(s)	318, 422, 474, 510
Hsp92II	CATG	5 cut(s)	48, 269, 286, 362, 814
HspAI	GCGC	1 cut(s)	654
KroI	GCCGGC	1 cut(s)	650
KroNI	GCCGGC	1 cut(s)	652
Ksp22I	TGATCA	1 cut(s)	445
LguI	GCTCTTC	1 cut(s)	701
LmnI	GCTCC	4 cut(s)	48, 475, 691, 1047
Lsp1109I	GCAGC	2 cut(s)	38, 906
LweI	GCATC	3 cut(s)	268, 345, 634
MabI	ACCWGGT	1 cut(s)	490
MaeI	CTAG	5 cut(s)	117, 185, 348, 467, 716
MaeIII	GTNAC	1 cut(s)	1165
MboII	GAAGA	8 cut(s)	259, 344, 408, 560, 688, 862, 987, 1070
MflI	RGATCY	4 cut(s)	272, 515, 634, 674
MhlI	GDGCHC	2 cut(s)	696, 1052
MluCI	AATT	6 cut(s)	37, 669, 838, 919, 1007, 1148
MmeI	TCCRAC	1 cut(s)	984
Mph1103I	ATGCAT	1 cut(s)	360
MroNI	GCCGGC	1 cut(s)	650
MseI	TTAA	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	815
MspI	CCGG	6 cut(s)	651, 724, 827, 992, 1033, 1053
MspR9I	CCNGG	2 cut(s)	440, 492
MvaI	CCWGG	2 cut(s)	440, 492
MvnI	CGCG	2 cut(s)	615, 741
MwoI	GCNNNNNNNGC	2 cut(s)	72, 827
NaeI	GCCGGC	1 cut(s)	652
NgoMIV	GCCGGC	1 cut(s)	650
NlaIII	CATG	5 cut(s)	48, 269, 286, 362, 814
NlaIV	GGNNCC	3 cut(s)	76, 676, 863
NsiI	ATGCAT	1 cut(s)	360
NspI	RCATGY	1 cut(s)	814
PciI	ACATGT	1 cut(s)	810
PciSI	GCTCTTC	1 cut(s)	701
PcsI	WCGNNNNNNNCGW	3 cut(s)	616, 761, 842
PdiI	GCCGGC	1 cut(s)	652
PfeI	GAWTC	8 cut(s)	148, 305, 314, 362, 374, 589, 750, 1154
PkrI	GCNGC	3 cut(s)	53, 617, 896
Ple19I	CGATCG	1 cut(s)	745
PscI	ACATGT	1 cut(s)	810
PsiI	TTATAA	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	696
Psp6I	CCWGG	2 cut(s)	438, 490
PspGI	CCWGG	2 cut(s)	438, 490
PspN4I	GGNNCC	3 cut(s)	76, 676, 863
PspPI	GGNCC	2 cut(s)	74, 577
PsuI	RGATCY	4 cut(s)	272, 515, 634, 674
PvuI	CGATCG	1 cut(s)	745
RgaI	GCGATCGC	1 cut(s)	745
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
RseI	CAYNNNNRTG	1 cut(s)	815
SacI	GAGCTC	1 cut(s)	696
SapI	GCTCTTC	1 cut(s)	701
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	3 cut(s)	52, 616, 895
Sau96I	GGNCC	2 cut(s)	74, 577
ScrFI	CCNGG	2 cut(s)	440, 492
SduI	GDGCHC	2 cut(s)	696, 1052
SexAI	ACCWGGT	1 cut(s)	490
SfaAI	GCGATCGC	1 cut(s)	745
SfaNI	GCATC	3 cut(s)	268, 345, 634
SgfI	GCGATCGC	1 cut(s)	745
SmiMI	CAYNNNNRTG	1 cut(s)	815
Sse9I	AATT	6 cut(s)	37, 669, 838, 919, 1007, 1148
SsiI	CCGC	4 cut(s)	615, 739, 830, 1069
SspI	AATATT	4 cut(s)	204, 344, 505, 1232
SspMI	CTAG	5 cut(s)	117, 185, 348, 467, 716
SstI	GAGCTC	1 cut(s)	696
StyD4I	CCNGG	2 cut(s)	438, 490
StyI	CCWWGG	2 cut(s)	184, 324
TaaI	ACNGT	1 cut(s)	432
TasI	AATT	6 cut(s)	37, 669, 838, 919, 1007, 1148
TauI	GCSGC	1 cut(s)	618
TfiI	GAWTC	8 cut(s)	148, 305, 314, 362, 374, 589, 750, 1154
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TseI	GCWGC	2 cut(s)	51, 894
TspGWI	ACGGA	3 cut(s)	141, 667, 681
XapI	RAATTY	2 cut(s)	838, 1148
XceI	RCATGY	1 cut(s)	814
XcmI	CCANNNNNNNNNTGG	3 cut(s)	202, 1132, 1135
XmaJI	CCTAGG	1 cut(s)	184
XmiI	GTMKAC	2 cut(s)	107, 434
XspI	CTAG	5 cut(s)	117, 185, 348, 467, 716
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.