Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003214.1

Orthogroup ID

OG0014867

Physical Location & Seq

Genomic Coordinates Forward (+)

28694 .. 34367

Gene Structure 5674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003214.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atggtaccagtgggtatcagcaatttggccggaaaaccccgaatttatgcaagcattgttactgtagtagtttgcttccccggcgaaattccccagttttcggctgcgaaattccccagttttcggctatcttcggccagtaaaccccaggcccaagccacaccaggcccaaagcaggcccaccatcagactacgccccagagggcccaaaccttgatcccagcccaatacgacttgggcacaatcagctcatccaccaccatcgcgtctcccaaaccggcgcgccgcctcctctttcgaaccttgcctgcaatcgacccgccatctcaggaaaagatccggcagatcatcccttccatgaccacaaccctaaaccgcgagatttcagatataagaaactaccatctccggcagaaacccagcaccacgcctctcaccgacgccaactcccacacgatcggatcagatccacccactgacccacgctccagatctaatgcaaacgccggccacgcacccgccggctctcgcccagatggaattggctccggtgctgttcgaggagctcttcttcatccacctcctcttggttctccagtggtacaatcgccggctctctctctctctctaccccaagcggaggcaatccaatccctcttcgccatcctcctctccctcatctatggcctctatcgctgctcgatcgaagctgccatctgcatccccaagatcttccgatctgagccggcgctcttccagacggaattggctccgattctgccatcactgtccccaaatgtcagctacgaaaacgacgacgtttcgatcaacgacatgtcggtggcttttccggtggggtcgaattcgctgtcgaagatgagtgggaaccagacggcggggcagaaggagatggagagcagctacgagagggttttggatgagaattgtagggttttcagtgagtatttcagggaggttttggagaataaagatggaggaagagtgattgatccaccgaccgtggtgttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box WD40

Protein Analysis

343

Amino Acids

36.86

Weight (kDa)

8.64

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014867)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007876 RLG00000008120 RLG00000023540
rosa_multiflora	Rmu_sc0000580.1_g000127 Rmu_sc0000898.1_g000092 Rmu_sc0001192.1_g000031 Rmu_sc0001955.1_g000036 Rmu_sc0003214.1_g000010 Rmu_sc0011910.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043220 Rroxscaffold_2G00138050 Rroxscaffold_3G00261050 Rroxscaffold_3G00262520 Rroxscaffold_5G00347700 Rroxscaffold_5G00362210
rosa_samantha	Rh3DG312600 Rh4BG267400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	3 cut(s)	266, 283, 378
AciI	CCGC	6 cut(s)	286, 320, 376, 519, 638, 896
AclWI	GGATC	5 cut(s)	211, 331, 461, 469, 1004
AcoI	YGGCCR	3 cut(s)	27, 135, 508
AcsI	RAATTY	4 cut(s)	42, 87, 110, 862
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	2 cut(s)	6, 603
AfiI	CCNNNNNNNGG	6 cut(s)	100, 123, 175, 587, 640, 895
AflIII	ACRYGT	1 cut(s)	834
AjnI	CCWGG	2 cut(s)	147, 163
AluBI	AGCT	5 cut(s)	249, 566, 710, 804, 921
AluI	AGCT	5 cut(s)	249, 566, 710, 804, 921
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	5 cut(s)	211, 331, 461, 469, 1004
AoxI	GGCC	8 cut(s)	27, 135, 150, 166, 177, 204, 508, 685
ApaI	GGGCCC	1 cut(s)	208
ApeKI	GCWGC	4 cut(s)	104, 696, 710, 918
ApoI	RAATTY	4 cut(s)	42, 87, 110, 862
ArsI	GACNNNNNNTTYG	2 cut(s)	854, 886
AscI	GGCGCGCC	1 cut(s)	281
Asp718I	GGTACC	1 cut(s)	4
AspLEI	GCGC	3 cut(s)	283, 285, 751
AspS9I	GGNCC	5 cut(s)	151, 167, 178, 204, 205
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	427
AsuII	TTCGAA	1 cut(s)	298
BaeGI	GKGCMC	2 cut(s)	208, 242
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	208, 568
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	4 cut(s)	91, 683, 697, 930
BceAI	ACGGC	1 cut(s)	909
BciT130I	CCWGG	2 cut(s)	149, 165
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	63
BfoI	RGCGCY	1 cut(s)	752
BglII	AGATCT	2 cut(s)	491, 729
BisI	GCNGC	5 cut(s)	105, 286, 697, 711, 919
BlsI	GCNGC	5 cut(s)	106, 287, 698, 712, 920
Bme1390I	CCNGG	3 cut(s)	81, 149, 165
BmgT120I	GGNCC	5 cut(s)	151, 167, 178, 204, 205
BmiI	GGNNCC	5 cut(s)	6, 206, 547, 771, 887
BmrFI	CCNGG	3 cut(s)	81, 149, 165
BmrI	ACTGGG	2 cut(s)	88, 111
BmsI	GCATC	1 cut(s)	729
BmuI	ACTGGG	2 cut(s)	88, 111
BpmI	CTGGAG	2 cut(s)	472, 579
Bpu14I	TTCGAA	1 cut(s)	298
BpuMI	CCSGG	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	3 cut(s)	79, 147, 1020
BsaWI	WCCGGW	2 cut(s)	548, 850
BsaXI	ACNNNNNCTCC	6 cut(s)	431, 461, 470, 500, 987, 1017
Bsc4I	CCNNNNNNNGG	6 cut(s)	100, 123, 175, 587, 640, 895
Bse118I	RCCGGY	5 cut(s)	277, 506, 521, 610, 745
Bse1I	ACTGG	5 cut(s)	8, 94, 117, 138, 596
BseBI	CCWGG	2 cut(s)	149, 165
BseDI	CCNNGG	3 cut(s)	79, 147, 1020
BseGI	GGATG	6 cut(s)	251, 348, 574, 663, 720, 943
BseLI	CCNNNNNNNGG	6 cut(s)	100, 123, 175, 587, 640, 895
BseMII	CTCAG	2 cut(s)	341, 732
BseNI	ACTGG	5 cut(s)	8, 94, 117, 138, 596
BsePI	GCGCGC	1 cut(s)	281
BseRI	GAGGAG	4 cut(s)	281, 573, 576, 659
BseSI	GKGCMC	2 cut(s)	208, 242
BseXI	GCAGC	4 cut(s)	91, 683, 697, 930
BseYI	CCCAGC	2 cut(s)	220, 419
Bsh1236I	CGCG	3 cut(s)	266, 283, 378
Bsh1285I	CGRYCG	3 cut(s)	459, 705, 1020
BshFI	GGCC	8 cut(s)	29, 137, 152, 168, 179, 206, 510, 687
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	3 cut(s)	459, 705, 1020
BsiHKAI	GWGCWC	1 cut(s)	568
BslFI	GGGAC	1 cut(s)	775
BslI	CCNNNNNNNGG	6 cut(s)	100, 123, 175, 587, 640, 895
BsmAI	GTCTC	1 cut(s)	273
BsmBI	CGTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	775
BsnI	GGCC	8 cut(s)	29, 137, 152, 168, 179, 206, 510, 687
Bsp119I	TTCGAA	1 cut(s)	298
Bsp120I	GGGCCC	1 cut(s)	204
Bsp1286I	GDGCHC	3 cut(s)	208, 242, 568
BspACI	CCGC	6 cut(s)	286, 320, 376, 519, 638, 896
BspANI	GGCC	8 cut(s)	29, 137, 152, 168, 179, 206, 510, 687
BspCNI	CTCAG	2 cut(s)	340, 733
BspFNI	CGCG	3 cut(s)	266, 283, 378
BspLI	GGNNCC	5 cut(s)	6, 206, 547, 771, 887
BspPI	GGATC	5 cut(s)	211, 331, 461, 469, 1004
BspQI	GCTCTTC	2 cut(s)	573, 758
BspT104I	TTCGAA	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	5 cut(s)	277, 506, 521, 610, 745
BsrI	ACTGG	5 cut(s)	8, 94, 117, 138, 596
BssAI	RCCGGY	5 cut(s)	277, 506, 521, 610, 745
BssECI	CCNNGG	3 cut(s)	79, 147, 1020
BssHII	GCGCGC	1 cut(s)	281
BssNI	GRCGYC	1 cut(s)	441
Bst2UI	CCWGG	2 cut(s)	149, 165
Bst4CI	ACNGT	3 cut(s)	64, 789, 1021
Bst6I	CTCTTC	4 cut(s)	573, 662, 758, 994
BstACI	GRCGYC	1 cut(s)	441
BstBI	TTCGAA	1 cut(s)	298
BstC8I	GCNNGC	8 cut(s)	52, 177, 283, 309, 508, 523, 612, 747
BstDEI	CTNAG	2 cut(s)	327, 741
BstDSI	CCRYGG	1 cut(s)	1020
BstF5I	GGATG	6 cut(s)	251, 348, 574, 663, 720, 943
BstFNI	CGCG	3 cut(s)	266, 283, 378
BstH2I	RGCGCY	1 cut(s)	752
BstHHI	GCGC	3 cut(s)	283, 285, 751
BstMAI	GTCTC	1 cut(s)	273
BstMCI	CGRYCG	3 cut(s)	459, 705, 1020
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 246, 512, 693
BstNI	CCWGG	2 cut(s)	149, 165
BstNSI	RCATGY	1 cut(s)	838
BstSCI	CCNGG	3 cut(s)	79, 147, 163
BstSFI	CTRYAG	1 cut(s)	63
BstSLI	GKGCMC	2 cut(s)	208, 242
BstUI	CGCG	3 cut(s)	266, 283, 378
BstV1I	GCAGC	4 cut(s)	91, 683, 697, 930
BstX2I	RGATCY	4 cut(s)	336, 466, 491, 729
BstYI	RGATCY	4 cut(s)	336, 466, 491, 729
BsuRI	GGCC	8 cut(s)	29, 137, 152, 168, 179, 206, 510, 687
BtgI	CCRYGG	1 cut(s)	1020
BtgZI	GCGATG	1 cut(s)	247
BtsCI	GGATG	6 cut(s)	251, 348, 574, 663, 720, 943
BtsIMutI	CAGTG	5 cut(s)	15, 474, 603, 785, 964
Cac8I	GCNNGC	8 cut(s)	52, 177, 283, 309, 508, 523, 612, 747
CfoI	GCGC	3 cut(s)	283, 285, 751
Cfr10I	RCCGGY	5 cut(s)	277, 506, 521, 610, 745
Cfr13I	GGNCC	5 cut(s)	151, 167, 178, 204, 205
CseI	GACGC	2 cut(s)	255, 449
Csp6I	GTAC	2 cut(s)	5, 602
CviAII	CATG	2 cut(s)	358, 835
CviQI	GTAC	2 cut(s)	5, 602
DdeI	CTNAG	2 cut(s)	327, 741
EaeI	YGGCCR	3 cut(s)	27, 135, 508
Eam1104I	CTCTTC	4 cut(s)	573, 662, 758, 994
EarI	CTCTTC	4 cut(s)	573, 662, 758, 994
Ecl136II	GAGCTC	1 cut(s)	566
Eco24I	GRGCYC	2 cut(s)	208, 568
Eco53kI	GAGCTC	1 cut(s)	566
EcoICRI	GAGCTC	1 cut(s)	566
EcoO109I	RGGNCCY	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	862
EcoRII	CCWGG	2 cut(s)	147, 163
EcoT38I	GRGCYC	2 cut(s)	208, 568
Esp3I	CGTCTC	1 cut(s)	273
FaeI	CATG	2 cut(s)	361, 838
FaiI	YATR	5 cut(s)	48, 359, 392, 684, 836
FaqI	GGGAC	1 cut(s)	775
FatI	CATG	2 cut(s)	357, 834
FauI	CCCGC	3 cut(s)	327, 526, 889
Fnu4HI	GCNGC	5 cut(s)	105, 286, 697, 711, 919
FokI	GGATG	6 cut(s)	238, 335, 561, 650, 707, 950
FriOI	GRGCYC	2 cut(s)	208, 568
Fsp4HI	GCNGC	5 cut(s)	105, 286, 697, 711, 919
GlaI	GCGC	3 cut(s)	282, 284, 750
GluI	GCNGC	5 cut(s)	105, 286, 697, 711, 919
GsaI	CCCAGC	2 cut(s)	224, 423
GsuI	CTGGAG	2 cut(s)	472, 579
HaeII	RGCGCY	1 cut(s)	752
HaeIII	GGCC	8 cut(s)	29, 137, 152, 168, 179, 206, 510, 687
HgaI	GACGC	2 cut(s)	255, 449
HhaI	GCGC	3 cut(s)	283, 285, 751
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	2 cut(s)	361, 838
Hin6I	GCGC	3 cut(s)	281, 283, 749
HinP1I	GCGC	3 cut(s)	281, 283, 749
HinfI	GANTC	1 cut(s)	775
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	7 cut(s)	189, 388, 461, 466, 737, 742, 774
Hpy188III	TCNNGA	3 cut(s)	329, 489, 757
Hpy8I	GTNNAC	1 cut(s)	143
Hpy99I	CGWCG	3 cut(s)	443, 818, 821
HpyAV	CCTTC	2 cut(s)	363, 898
HpyCH4III	ACNGT	3 cut(s)	64, 789, 1021
HpyCH4IV	ACGT	1 cut(s)	819
HpyCH4V	TGCA	4 cut(s)	50, 311, 500, 720
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 246, 512, 693
HpyF3I	CTNAG	2 cut(s)	327, 741
HpySE526I	ACGT	1 cut(s)	819
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	2 cut(s)	361, 838
HspAI	GCGC	3 cut(s)	281, 283, 749
KpnI	GGTACC	1 cut(s)	8
KroI	GCCGGC	4 cut(s)	506, 521, 610, 745
KroNI	GCCGGC	4 cut(s)	508, 523, 612, 747
LguI	GCTCTTC	2 cut(s)	573, 758
LmnI	GCTCC	4 cut(s)	491, 551, 563, 775
Lsp1109I	GCAGC	4 cut(s)	91, 683, 697, 930
LweI	GCATC	1 cut(s)	729
MaeII	ACGT	1 cut(s)	819
MaeIII	GTNAC	1 cut(s)	58
MboII	GAAGA	8 cut(s)	123, 560, 563, 649, 724, 745, 886, 1011
MflI	RGATCY	4 cut(s)	336, 466, 491, 729
MhlI	GDGCHC	3 cut(s)	208, 242, 568
MluCI	AATT	8 cut(s)	22, 42, 87, 110, 540, 764, 862, 943
MroNI	GCCGGC	4 cut(s)	506, 521, 610, 745
MslI	CAYNNNNRTG	1 cut(s)	839
MspR9I	CCNGG	3 cut(s)	81, 149, 165
MvaI	CCWGG	2 cut(s)	149, 165
MvnI	CGCG	3 cut(s)	266, 283, 378
MwoI	GCNNNNNNNGC	4 cut(s)	81, 246, 512, 693
NaeI	GCCGGC	4 cut(s)	508, 523, 612, 747
NciI	CCSGG	1 cut(s)	81
NgoMIV	GCCGGC	4 cut(s)	506, 521, 610, 745
NlaIII	CATG	2 cut(s)	361, 838
NlaIV	GGNNCC	5 cut(s)	6, 206, 547, 771, 887
NspI	RCATGY	1 cut(s)	838
NspV	TTCGAA	1 cut(s)	298
PalAI	GGCGCGCC	1 cut(s)	281
PauI	GCGCGC	1 cut(s)	281
PciI	ACATGT	1 cut(s)	834
PciSI	GCTCTTC	2 cut(s)	573, 758
PcsI	WCGNNNNNNNCGW	1 cut(s)	813
PdiI	GCCGGC	4 cut(s)	508, 523, 612, 747
PfeI	GAWTC	1 cut(s)	775
PkrI	GCNGC	5 cut(s)	106, 287, 698, 712, 920
Ple19I	CGATCG	2 cut(s)	459, 705
PscI	ACATGT	1 cut(s)	834
Psp124BI	GAGCTC	1 cut(s)	568
Psp6I	CCWGG	2 cut(s)	147, 163
PspFI	CCCAGC	2 cut(s)	220, 419
PspGI	CCWGG	2 cut(s)	147, 163
PspN4I	GGNNCC	5 cut(s)	6, 206, 547, 771, 887
PspOMI	GGGCCC	1 cut(s)	204
PspPI	GGNCC	5 cut(s)	151, 167, 178, 204, 205
PsuI	RGATCY	4 cut(s)	336, 466, 491, 729
PteI	GCGCGC	1 cut(s)	281
PvuI	CGATCG	2 cut(s)	459, 705
RsaI	GTAC	2 cut(s)	6, 603
RsaNI	GTAC	2 cut(s)	5, 602
RseI	CAYNNNNRTG	1 cut(s)	839
SacI	GAGCTC	1 cut(s)	568
SapI	GCTCTTC	2 cut(s)	573, 758
SatI	GCNGC	5 cut(s)	105, 286, 697, 711, 919
Sau96I	GGNCC	5 cut(s)	151, 167, 178, 204, 205
ScrFI	CCNGG	3 cut(s)	81, 149, 165
SduI	GDGCHC	3 cut(s)	208, 242, 568
SfaNI	GCATC	1 cut(s)	729
SfcI	CTRYAG	1 cut(s)	63
SfuI	TTCGAA	1 cut(s)	298
SgsI	GGCGCGCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	839
Sse9I	AATT	8 cut(s)	22, 42, 87, 110, 540, 764, 862, 943
SsiI	CCGC	6 cut(s)	286, 320, 376, 519, 638, 896
SstI	GAGCTC	1 cut(s)	568
StyD4I	CCNGG	3 cut(s)	79, 147, 163
TaaI	ACNGT	3 cut(s)	64, 789, 1021
TaiI	ACGT	1 cut(s)	822
TaqI	TCGA	8 cut(s)	298, 315, 559, 701, 705, 824, 860, 872
TasI	AATT	8 cut(s)	22, 42, 87, 110, 540, 764, 862, 943
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	775
TscAI	CASTG	5 cut(s)	15, 481, 603, 792, 964
TseI	GCWGC	4 cut(s)	104, 696, 710, 918
TspDTI	ATGAA	1 cut(s)	563
TspGWI	ACGGA	1 cut(s)	776
TspRI	CASTG	5 cut(s)	15, 481, 603, 792, 964
XapI	RAATTY	4 cut(s)	42, 87, 110, 862
XceI	RCATGY	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.