Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011910.1

Orthogroup ID

OG0014867

Physical Location & Seq

Genomic Coordinates Forward (+)

27074 .. 28449

Gene Structure 1376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011910.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atggccacattggcagagtcagtctccaactcctgccacaagtgtcagatgtattccaacatatcccgagcacccccatcgtcgtatccatacttcttgctcgttggcctttctgctgatggggattattggacctcaatggcaatccaatccctcttcgctatccttctctccctcatctacgacctctaccgccgctcgatcgacgccgcaatccgcatccccgagatcttccgatctgagccggcactcgcccagacagaattagctcaagtgttgttcaaggagctcttcctcatccaccacctcctggttctccagttctatgaaaacgacgatgtttcgatcaaggacatgtcggtggcttttccggcagggtcgaattcgctgtcgaagatgagtgggaaccagacaacggggctgaaggacatagagagcagctacgagagggttttggatgagaattgtagggttttcagtgagtatttcagggaggttttggagaataaagatgaaggaagagtgattgatccaccggccgtggtgttggaattgagtgaaggaagtgatgagttccggtatgatgatcggagcaccggagaagatgaagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box WD40

Protein Analysis

204

Amino Acids

23.01

Weight (kDa)

4.47

Isoelectric Point (pI)

57.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014867)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007876 RLG00000008120 RLG00000023540
rosa_multiflora	Rmu_sc0000580.1_g000127 Rmu_sc0000898.1_g000092 Rmu_sc0001192.1_g000031 Rmu_sc0001955.1_g000036 Rmu_sc0003214.1_g000010 Rmu_sc0011910.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043220 Rroxscaffold_2G00138050 Rroxscaffold_3G00261050 Rroxscaffold_3G00262520 Rroxscaffold_5G00347700 Rroxscaffold_5G00362210
rosa_samantha	Rh3DG312600 Rh4BG267400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccBSI	CCGCTC	1 cut(s)	198
AciI	CCGC	4 cut(s)	193, 196, 210, 217
AclWI	GGATC	1 cut(s)	524
AcoI	YGGCCR	2 cut(s)	3, 537
AcsI	RAATTY	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	443
AcyI	GRCGYC	1 cut(s)	207
AfiI	CCNNNNNNNGG	2 cut(s)	310, 415
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	3 cut(s)	269, 289, 441
AluI	AGCT	3 cut(s)	269, 289, 441
Alw21I	GWGCWC	3 cut(s)	73, 291, 596
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	1 cut(s)	524
Ama87I	CYCGRG	2 cut(s)	66, 224
AoxI	GGCC	3 cut(s)	3, 106, 537
ApeKI	GCWGC	1 cut(s)	438
ApoI	RAATTY	1 cut(s)	382
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AspS9I	GGNCC	1 cut(s)	132
AvaI	CYCGRG	2 cut(s)	66, 224
AvaII	GGWCC	1 cut(s)	132
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	291
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
Bbv12I	GWGCWC	3 cut(s)	73, 291, 596
BbvI	GCAGC	1 cut(s)	450
BccI	CCATC	2 cut(s)	85, 113
BceAI	ACGGC	1 cut(s)	524
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BciT130I	CCWGG	1 cut(s)	311
BciVI	GTATCC	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	28
BfuI	GTATCC	1 cut(s)	96
BglI	GCCNNNNNGGC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	3 cut(s)	196, 210, 439
BlsI	GCNGC	3 cut(s)	197, 211, 440
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	132
BmeT110I	CYCGRG	2 cut(s)	66, 224
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	1 cut(s)	311
BmsI	GCATC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BpmI	CTGGAG	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	540
BsaWI	WCCGGW	2 cut(s)	576, 596
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 415
Bse118I	RCCGGY	2 cut(s)	244, 535
Bse1I	ACTGG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	3 cut(s)	219, 297, 463
BseLI	CCNNNNNNNGG	2 cut(s)	310, 415
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	319
BseX3I	CGGCCG	1 cut(s)	537
BseXI	GCAGC	1 cut(s)	450
Bsh1285I	CGRYCG	2 cut(s)	204, 540
BshFI	GGCC	3 cut(s)	5, 108, 539
BsiEI	CGRYCG	2 cut(s)	204, 540
BsiHKAI	GWGCWC	3 cut(s)	73, 291, 596
BsiHKCI	CYCGRG	2 cut(s)	66, 224
BsiSI	CCGG	5 cut(s)	245, 371, 536, 577, 597
BslI	CCNNNNNNNGG	2 cut(s)	310, 415
BsmAI	GTCTC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	5, 108, 539
BsoBI	CYCGRG	2 cut(s)	66, 224
Bsp1286I	GDGCHC	3 cut(s)	73, 291, 596
Bsp143I	GATC	6 cut(s)	201, 228, 236, 345, 529, 586
BspACI	CCGC	4 cut(s)	193, 196, 210, 217
BspANI	GGCC	3 cut(s)	5, 108, 539
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	407
BspPI	GGATC	1 cut(s)	524
BspQI	GCTCTTC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	198
BsrFI	RCCGGY	2 cut(s)	244, 535
BsrI	ACTGG	1 cut(s)	319
BssAI	RCCGGY	2 cut(s)	244, 535
BssECI	CCNNGG	1 cut(s)	540
BssMI	GATC	6 cut(s)	201, 228, 236, 345, 529, 586
BssNI	GRCGYC	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	311
Bst6I	CTCTTC	3 cut(s)	161, 296, 514
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	540
BstF5I	GGATG	3 cut(s)	219, 297, 463
BstKTI	GATC	6 cut(s)	204, 231, 239, 348, 532, 589
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	6 cut(s)	201, 228, 236, 345, 529, 586
BstMCI	CGRYCG	2 cut(s)	204, 540
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 371
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BstZI	CGGCCG	1 cut(s)	537
BsuI	GTATCC	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	5, 108, 539
BtgI	CCRYGG	1 cut(s)	540
BtsCI	GGATG	3 cut(s)	219, 297, 463
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	246
Cfr10I	RCCGGY	2 cut(s)	244, 535
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	1 cut(s)	215
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	9 cut(s)	5, 108, 244, 269, 289, 365, 421, 441, 539
CviKI_1	RGCY	9 cut(s)	5, 108, 244, 269, 289, 365, 421, 441, 539
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	6 cut(s)	203, 230, 238, 347, 531, 588
DpnII	GATC	6 cut(s)	201, 228, 236, 345, 529, 586
EaeI	YGGCCR	2 cut(s)	3, 537
EagI	CGGCCG	1 cut(s)	537
Eam1104I	CTCTTC	3 cut(s)	161, 296, 514
EarI	CTCTTC	3 cut(s)	161, 296, 514
Ecl136II	GAGCTC	1 cut(s)	289
EclXI	CGGCCG	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	132
Eco52I	CGGCCG	1 cut(s)	537
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	443
Eco88I	CYCGRG	2 cut(s)	66, 224
EcoICRI	GAGCTC	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	291
FaeI	CATG	1 cut(s)	358
FaiI	YATR	6 cut(s)	62, 91, 327, 356, 431, 582
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	196, 210, 439
FokI	GGATG	3 cut(s)	206, 284, 470
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	3 cut(s)	196, 210, 439
GluI	GCNGC	3 cut(s)	196, 210, 439
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	3 cut(s)	5, 108, 539
HapII	CCGG	5 cut(s)	245, 371, 536, 577, 597
HgaI	GACGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	358
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	5 cut(s)	245, 371, 536, 577, 597
Hpy188I	TCNGA	4 cut(s)	48, 236, 241, 591
Hpy188III	TCNNGA	1 cut(s)	66
Hpy99I	CGWCG	3 cut(s)	85, 209, 338
HpyAV	CCTTC	5 cut(s)	176, 418, 509, 554, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 371
HpyF3I	CTNAG	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	358
KroI	GCCGGC	1 cut(s)	244
KroNI	GCCGGC	1 cut(s)	246
Kzo9I	GATC	6 cut(s)	201, 228, 236, 345, 529, 586
LguI	GCTCTTC	1 cut(s)	296
LmnI	GCTCC	2 cut(s)	286, 591
Lsp1109I	GCAGC	1 cut(s)	450
LweI	GCATC	1 cut(s)	228
MalI	GATC	6 cut(s)	203, 230, 238, 347, 531, 588
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	6 cut(s)	201, 228, 236, 345, 529, 586
MboII	GAAGA	6 cut(s)	148, 223, 283, 406, 531, 614
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	3 cut(s)	73, 291, 596
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	263, 382, 463, 551
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	3 cut(s)	51, 81, 528
MnlI	CCTC	8 cut(s)	145, 164, 185, 197, 305, 317, 441, 487
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	359
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	5 cut(s)	245, 371, 536, 577, 597
MspR9I	CCNGG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	11, 371
NaeI	GCCGGC	1 cut(s)	246
NdeII	GATC	6 cut(s)	201, 228, 236, 345, 529, 586
NgoMIV	GCCGGC	1 cut(s)	244
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	1 cut(s)	407
NspI	RCATGY	1 cut(s)	358
PciI	ACATGT	1 cut(s)	354
PciSI	GCTCTTC	1 cut(s)	296
PdiI	GCCGGC	1 cut(s)	246
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	3 cut(s)	197, 211, 440
Ple19I	CGATCG	1 cut(s)	204
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PscI	ACATGT	1 cut(s)	354
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	132
PsuI	RGATCY	1 cut(s)	228
PvuI	CGATCG	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	296
SatI	GCNGC	3 cut(s)	196, 210, 439
Sau3AI	GATC	6 cut(s)	201, 228, 236, 345, 529, 586
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	3 cut(s)	73, 291, 596
SetI	ASST	7 cut(s)	137, 189, 271, 291, 309, 443, 498
SfaNI	GCATC	1 cut(s)	228
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	4 cut(s)	263, 382, 463, 551
SsiI	CCGC	4 cut(s)	193, 196, 210, 217
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	309
TaqI	TCGA	5 cut(s)	200, 204, 344, 380, 392
TasI	AATT	4 cut(s)	263, 382, 463, 551
TauI	GCSGC	2 cut(s)	198, 212
TscAI	CASTG	1 cut(s)	484
TseI	GCWGC	1 cut(s)	438
TspDTI	ATGAA	2 cut(s)	342, 528
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	1 cut(s)	382
XceI	RCATGY	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.