Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014867

Physical Location & Seq

Genomic Coordinates Reverse (-)

19262829 .. 19267733

Gene Structure 4905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTCGGTGGATTTTCCGGCGTGGTCGAATCCGTTGTGGAAGATGAGTGGGAACCGGACGGCGGGGCTAAAGGAGATGGAGAGCAGCTATGAGAGGGTTTTGGATGAGAATTGTAGGGTTTTCAATGAGTATTTTAGGGAGGTTTTGGAGAATAAAGATGGAGGAAGAGTGATTGATCCACCTACCGTGGTGTTAGAATTGAGTGAAGGAAGTGATGAGTTCCGGTATGATGATCGGAGCACCTTGGAGAAGATGAAGGGTGAGGAGCAGTGGCGCCGGAGCTTGCGGTGTGTTTGTGGGGACCGCGATCGATGTATGGGTACAACTCCTAATTCTATCCAAGAAGTTCTCAGTAATTCAGCGAAGTTCGGTTCTAGACATGAACTTCTAAAAGATGTTGCAGATTCCTGTCCAAGCAGAACTGCCTTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box WD40

Protein Analysis

144

Amino Acids

16.53

Weight (kDa)

5.04

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014867)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007876 RLG00000008120 RLG00000023540
rosa_multiflora	Rmu_sc0000580.1_g000127 Rmu_sc0000898.1_g000092 Rmu_sc0001192.1_g000031 Rmu_sc0001955.1_g000036 Rmu_sc0003214.1_g000010 Rmu_sc0011910.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043220 Rroxscaffold_2G00138050 Rroxscaffold_3G00261050 Rroxscaffold_3G00262520 Rroxscaffold_5G00347700 Rroxscaffold_5G00362210
rosa_samantha	Rh3DG312600 Rh4BG267400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	273
AccII	CGCG	1 cut(s)	306
AciI	CCGC	3 cut(s)	62, 286, 304
AclWI	GGATC	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	274
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	2 cut(s)	87, 282
AluI	AGCT	2 cut(s)	87, 282
Alw21I	GWGCWC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	2 cut(s)	70, 152
BceAI	ACGGC	1 cut(s)	75
BfaI	CTAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	277
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	3 cut(s)	53, 275, 302
Bsa29I	ATCGAT	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	186, 243
BsaWI	WCCGGW	2 cut(s)	54, 222
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
BseCI	ATCGAT	1 cut(s)	310
BseDI	CCNNGG	2 cut(s)	186, 243
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	306
Bsh1285I	CGRYCG	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	273
BshVI	ATCGAT	1 cut(s)	310
BsiEI	CGRYCG	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	242
BsiSI	CCGG	4 cut(s)	17, 55, 223, 277
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	3 cut(s)	175, 232, 307
BspACI	CCGC	3 cut(s)	62, 286, 304
BspCNI	CTCAG	1 cut(s)	363
BspDI	ATCGAT	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	3 cut(s)	53, 275, 302
BspPI	GGATC	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	186, 243
BssMI	GATC	3 cut(s)	175, 232, 307
BssNI	GRCGYC	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	160
BstACI	GRCGYC	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	350
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	3 cut(s)	178, 235, 310
BstMBI	GATC	3 cut(s)	175, 232, 307
BstMCI	CGRYCG	1 cut(s)	310
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	96
Bsu15I	ATCGAT	1 cut(s)	310
BsuTUI	ATCGAT	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	109
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	284
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	301
ClaI	ATCGAT	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	1 cut(s)	380
CviJI	RGCY	3 cut(s)	67, 87, 282
CviKI_1	RGCY	3 cut(s)	67, 87, 282
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	1 cut(s)	350
DinI	GGCGCC	1 cut(s)	275
DpnI	GATC	3 cut(s)	177, 234, 309
DpnII	GATC	3 cut(s)	175, 232, 307
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	243
EgeI	GGCGCC	1 cut(s)	275
EheI	GGCGCC	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	1 cut(s)	383
FaiI	YATR	4 cut(s)	90, 228, 317, 381
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	1 cut(s)	379
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	1 cut(s)	375
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	277
HapII	CCGG	4 cut(s)	17, 55, 223, 277
HhaI	GCGC	1 cut(s)	276
Hin1I	GRCGYC	1 cut(s)	274
Hin1II	CATG	1 cut(s)	383
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	28, 404
HpaII	CCGG	4 cut(s)	17, 55, 223, 277
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	1 cut(s)	375
HpyAV	CCTTC	2 cut(s)	200, 250
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	1 cut(s)	401
HpyF3I	CTNAG	1 cut(s)	350
Hsp92I	GRCGYC	1 cut(s)	274
Hsp92II	CATG	1 cut(s)	383
HspAI	GCGC	1 cut(s)	274
KasI	GGCGCC	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	175, 232, 307
LmnI	GCTCC	3 cut(s)	237, 265, 279
LpnPI	CCDG	5 cut(s)	30, 68, 236, 290, 421
Lsp1109I	GCAGC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	375
MalI	GATC	3 cut(s)	177, 234, 309
MboI	GATC	3 cut(s)	175, 232, 307
MboII	GAAGA	3 cut(s)	52, 177, 262
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	4 cut(s)	109, 197, 331, 355
Mly113I	GGCGCC	1 cut(s)	274
MnlI	CCTC	4 cut(s)	87, 133, 155, 256
MseI	TTAA	1 cut(s)	433
MspI	CCGG	4 cut(s)	17, 55, 223, 277
MvnI	CGCG	1 cut(s)	306
NarI	GGCGCC	1 cut(s)	274
NdeII	GATC	3 cut(s)	175, 232, 307
NlaIII	CATG	1 cut(s)	383
NlaIV	GGNNCC	3 cut(s)	53, 275, 302
PfeI	GAWTC	2 cut(s)	28, 404
PkrI	GCNGC	1 cut(s)	86
Ple19I	CGATCG	1 cut(s)	310
PluTI	GGCGCC	1 cut(s)	277
PspN4I	GGNNCC	3 cut(s)	53, 275, 302
PspPI	GGNCC	1 cut(s)	301
PvuI	CGATCG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	433
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	3 cut(s)	175, 232, 307
Sau96I	GGNCC	1 cut(s)	301
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	5 cut(s)	89, 144, 184, 245, 284
SfoI	GGCGCC	1 cut(s)	275
SinI	GGWCC	1 cut(s)	301
Sse9I	AATT	4 cut(s)	109, 197, 331, 355
SsiI	CCGC	3 cut(s)	62, 286, 304
SspDI	GGCGCC	1 cut(s)	273
SspMI	CTAG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	2 cut(s)	26, 310
TasI	AATT	4 cut(s)	109, 197, 331, 355
TfiI	GAWTC	2 cut(s)	28, 404
Tru1I	TTAA	1 cut(s)	433
Tru9I	TTAA	1 cut(s)	433
TscAI	CASTG	1 cut(s)	275
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	2 cut(s)	269, 396
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	301
XbaI	TCTAGA	1 cut(s)	374
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.