Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001192.1

Orthogroup ID

OG0014867

Physical Location & Seq

Genomic Coordinates Reverse (-)

126207 .. 127441

Gene Structure 1235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001192.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgtggcaagaattggcttgcggaaattatctgaactcccatgatggtagtcatcagggggaggtgcagacatcagagggagatgtctacatgttcgtctctaatcgtgaagggtgtgttgtgctctttttccccttcgaccgagcggaggcaatccaatccctctctgccatcctcctctccctcatctaccgcctctaccgccgctcgatcgacgcggccgtctgcatccccgagatcttccgatccgagccggagctagcccagacggaattggctccggtgctattcgaggagctcttcctcatccacctcctcctggttctccagtggtacaatcgccggcgatcgcagattctgccgtcgctgtccccaaatgtcagccacaaaatcaacgacatttcgatcaacgacatgtcattggattttccggaggggtcgaatttgctatcgaagatgagtgggaaccagacggcggggctgaaggagatggcgagcagccacaagagggttttggatgagaattgtagggttttcaatgagcatttcagggaggttttggagaataaagatgaaggaagagtgattgatccatcggctgtggtgttggaattgagtgaaggaagtgatgagttcctatatgatgattggagcaccggagaagatgaaggtctggattcaactggtgatggtggtgctggagatggtggccggaagtggtggtcttcgatgatggcagaggaagagaagaagaagaagagaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box WD40

Protein Analysis

255

Amino Acids

28.8

Weight (kDa)

4.71

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014867)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007876 RLG00000008120 RLG00000023540
rosa_multiflora	Rmu_sc0000580.1_g000127 Rmu_sc0000898.1_g000092 Rmu_sc0001192.1_g000031 Rmu_sc0001955.1_g000036 Rmu_sc0003214.1_g000010 Rmu_sc0011910.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043220 Rroxscaffold_2G00138050 Rroxscaffold_3G00261050 Rroxscaffold_3G00262520 Rroxscaffold_5G00347700 Rroxscaffold_5G00362210
rosa_samantha	Rh3DG312600 Rh4BG267400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AccBSI	CCGCTC	2 cut(s)	146, 207
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	1 cut(s)	218
AccIII	TCCGGA	1 cut(s)	430
AciI	CCGC	7 cut(s)	21, 146, 193, 202, 205, 218, 476
AclWI	GGATC	2 cut(s)	240, 584
AcoI	YGGCCR	2 cut(s)	219, 709
AcsI	RAATTY	1 cut(s)	442
AcuI	CTGAAG	1 cut(s)	503
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	4 cut(s)	148, 319, 475, 508
AflIII	ACRYGT	2 cut(s)	90, 414
AgsI	TTSAA	2 cut(s)	538, 681
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	2 cut(s)	259, 298
AluI	AGCT	2 cut(s)	259, 298
Alw21I	GWGCWC	3 cut(s)	126, 300, 656
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	2 cut(s)	240, 584
AlwNI	CAGNNNCTG	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	430
AoxI	GGCC	2 cut(s)	219, 709
ApeKI	GCWGC	1 cut(s)	498
ApoI	RAATTY	1 cut(s)	442
AsiSI	GCGATCGC	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	698
AsuNHI	GCTAGC	1 cut(s)	259
AvaI	CYCGRG	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	3 cut(s)	126, 300, 656
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	7 cut(s)	38, 179, 484, 601, 683, 698, 727
BceAI	ACGGC	3 cut(s)	206, 346, 489
BciT130I	CCWGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	1 cut(s)	260
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	3 cut(s)	205, 219, 499
BlsI	GCNGC	3 cut(s)	206, 220, 500
Bme1390I	CCNGG	1 cut(s)	320
BmeT110I	CYCGRG	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	279, 467
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	237
BmtI	GCTAGC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	717
BpmI	CTGGAG	2 cut(s)	311, 720
BsaWI	WCCGGW	3 cut(s)	280, 430, 656
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 319, 475, 508
Bse118I	RCCGGY	1 cut(s)	342
Bse1I	ACTGG	2 cut(s)	328, 688
BseAI	TCCGGA	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	320
BseGI	GGATG	4 cut(s)	171, 228, 306, 523
BseLI	CCNNNNNNNGG	4 cut(s)	148, 319, 475, 508
BseNI	ACTGG	2 cut(s)	328, 688
BseRI	GAGGAG	3 cut(s)	167, 305, 308
BseX3I	CGGCCG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	510
BsgI	GTGCAG	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	218
Bsh1285I	CGRYCG	4 cut(s)	142, 213, 222, 350
BshFI	GGCC	2 cut(s)	221, 711
BsiEI	CGRYCG	4 cut(s)	142, 213, 222, 350
BsiHKAI	GWGCWC	3 cut(s)	126, 300, 656
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	6 cut(s)	254, 281, 343, 431, 657, 712
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	4 cut(s)	148, 319, 475, 508
BsmAI	GTCTC	1 cut(s)	103
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	2 cut(s)	221, 711
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	3 cut(s)	126, 300, 656
Bsp13I	TCCGGA	1 cut(s)	430
Bsp143I	GATC	6 cut(s)	210, 237, 245, 347, 405, 589
BspACI	CCGC	7 cut(s)	21, 146, 193, 202, 205, 218, 476
BspANI	GGCC	2 cut(s)	221, 711
BspEI	TCCGGA	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	2 cut(s)	279, 467
BspOI	GCTAGC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	240, 584
BspQI	GCTCTTC	1 cut(s)	305
BsrBI	CCGCTC	2 cut(s)	146, 207
BsrFI	RCCGGY	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	328, 688
BssAI	RCCGGY	1 cut(s)	342
BssMI	GATC	6 cut(s)	210, 237, 245, 347, 405, 589
Bst2UI	CCWGG	1 cut(s)	320
Bst6I	CTCTTC	4 cut(s)	305, 574, 738, 752
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstC8I	GCNNGC	4 cut(s)	19, 261, 344, 496
BstF5I	GGATG	4 cut(s)	171, 228, 306, 523
BstFNI	CGCG	1 cut(s)	218
BstKTI	GATC	6 cut(s)	213, 240, 248, 350, 408, 592
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	6 cut(s)	210, 237, 245, 347, 405, 589
BstMCI	CGRYCG	4 cut(s)	142, 213, 222, 350
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 358
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	2 cut(s)	94, 418
BstSCI	CCNGG	1 cut(s)	318
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	510
BstV2I	GAAGAC	1 cut(s)	717
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BstZI	CGGCCG	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	221, 711
BtsCI	GGATG	4 cut(s)	171, 228, 306, 523
BtsIMutI	CAGTG	1 cut(s)	335
Cac8I	GCNNGC	4 cut(s)	19, 261, 344, 496
CaiI	CAGNNNCTG	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	342
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	3 cut(s)	41, 91, 415
CviQI	GTAC	1 cut(s)	334
DpnI	GATC	6 cut(s)	212, 239, 247, 349, 407, 591
DpnII	GATC	6 cut(s)	210, 237, 245, 347, 405, 589
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	2 cut(s)	219, 709
EagI	CGGCCG	1 cut(s)	219
Eam1104I	CTCTTC	4 cut(s)	305, 574, 738, 752
EarI	CTCTTC	4 cut(s)	305, 574, 738, 752
Ecl136II	GAGCTC	1 cut(s)	298
EclXI	CGGCCG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	300
Eco52I	CGGCCG	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	3 cut(s)	44, 94, 418
FaiI	YATR	5 cut(s)	42, 92, 416, 640, 642
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	3 cut(s)	40, 90, 414
FauI	CCCGC	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	3 cut(s)	205, 219, 499
FokI	GGATG	4 cut(s)	158, 215, 293, 530
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	3 cut(s)	205, 219, 499
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	3 cut(s)	205, 219, 499
GsuI	CTGGAG	2 cut(s)	311, 720
HaeIII	GGCC	2 cut(s)	221, 711
HapII	CCGG	6 cut(s)	254, 281, 343, 431, 657, 712
HgaI	GACGC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	44, 94, 418
HinfI	GANTC	2 cut(s)	355, 677
HpaII	CCGG	6 cut(s)	254, 281, 343, 431, 657, 712
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	4 cut(s)	33, 76, 245, 250
Hpy188III	TCNNGA	3 cut(s)	107, 431, 674
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	2 cut(s)	218, 367
HpyAV	CCTTC	6 cut(s)	104, 145, 478, 569, 614, 662
HpyCH4V	TGCA	2 cut(s)	67, 228
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 358
Hsp92II	CATG	3 cut(s)	44, 94, 418
Kpn2I	TCCGGA	1 cut(s)	430
KroI	GCCGGC	1 cut(s)	342
KroNI	GCCGGC	1 cut(s)	344
Kzo9I	GATC	6 cut(s)	210, 237, 245, 347, 405, 589
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	4 cut(s)	256, 283, 295, 651
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	1 cut(s)	260
MalI	GATC	6 cut(s)	212, 239, 247, 349, 407, 591
MbiI	CCGCTC	2 cut(s)	146, 207
MboI	GATC	6 cut(s)	210, 237, 245, 347, 405, 589
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	3 cut(s)	126, 300, 656
MluCI	AATT	6 cut(s)	11, 25, 272, 442, 523, 611
MmeI	TCCRAC	1 cut(s)	588
MreI	CGCCGGCG	1 cut(s)	342
MroI	TCCGGA	1 cut(s)	430
MroNI	GCCGGC	1 cut(s)	342
MspI	CCGG	6 cut(s)	254, 281, 343, 431, 657, 712
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	201, 358
NaeI	GCCGGC	1 cut(s)	344
NdeII	GATC	6 cut(s)	210, 237, 245, 347, 405, 589
NgoMIV	GCCGGC	1 cut(s)	342
NheI	GCTAGC	1 cut(s)	259
NlaIII	CATG	3 cut(s)	44, 94, 418
NlaIV	GGNNCC	2 cut(s)	279, 467
NspI	RCATGY	2 cut(s)	94, 418
PciI	ACATGT	2 cut(s)	90, 414
PciSI	GCTCTTC	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	355, 677
PkrI	GCNGC	3 cut(s)	206, 220, 500
Ple19I	CGATCG	2 cut(s)	213, 350
PscI	ACATGT	2 cut(s)	90, 414
Psp124BI	GAGCTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	279, 467
PstNI	CAGNNNCTG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	237
PvuI	CGATCG	2 cut(s)	213, 350
RgaI	GCGATCGC	1 cut(s)	350
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SacI	GAGCTC	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	305
SatI	GCNGC	3 cut(s)	205, 219, 499
Sau3AI	GATC	6 cut(s)	210, 237, 245, 347, 405, 589
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	3 cut(s)	126, 300, 656
SetI	ASST	7 cut(s)	66, 261, 300, 315, 558, 673, 766
SfaAI	GCGATCGC	1 cut(s)	350
SfaNI	GCATC	1 cut(s)	237
SgfI	GCGATCGC	1 cut(s)	350
SgrAI	CRCCGGYG	1 cut(s)	342
Sse9I	AATT	6 cut(s)	11, 25, 272, 442, 523, 611
SsiI	CCGC	7 cut(s)	21, 146, 193, 202, 205, 218, 476
SspMI	CTAG	1 cut(s)	260
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	318
TaqI	TCGA	8 cut(s)	138, 209, 213, 291, 404, 440, 452, 728
TaqII	GACCGA	1 cut(s)	156
TasI	AATT	6 cut(s)	11, 25, 272, 442, 523, 611
TauI	GCSGC	2 cut(s)	207, 221
TfiI	GAWTC	2 cut(s)	355, 677
TscAI	CASTG	1 cut(s)	335
TseI	GCWGC	1 cut(s)	498
TspDTI	ATGAA	2 cut(s)	588, 681
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	335
XapI	RAATTY	1 cut(s)	442
XceI	RCATGY	2 cut(s)	94, 418
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.