Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005245

Physical Location & Seq

Genomic Coordinates Reverse (-)

42345792 .. 42356447

Gene Structure 10656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034412

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCGGTGGTTAAGTAGTTCACTTTTGAAAGCAAATATTATACAACATCCCAGGTTGCATCTCAATAGATCTGACTTGGTTATTAGCCCGAAACACGATTACTATCCTTTGACTCCTGAAGCACAGAAGCAGGTTCCTCAATTTCTACGTGGGAGGATAACTCCTCGTGAACCTCCTGACAGGCATGTGGTCCTCACTATTGGAGCTTTGCATCAAATTGATGCTACTGCCCTTCCTAATGCTGCCAGTGCATGGCGTGATGAATTTGCAGCTCTACCAAAGCCCTTACTTGTGGTGAACATTGGTGGTCCTACAGGCAATTGTCGTTATGGTGTGGACCTTGCGAAGCAATTGACAACCTATCTGCTTAGTATACTTCTAAGCTGTGGAAGCATCAGACTATGTTTCTCTAGTAGAACACCTGAAAACCCAAACCCGCACATGGGCCATCTAGCTTGGGCCGATGCTTTTGCTGTCACCGCAGATTCTGTTAGAATGATAAGTGAGGTTTGCATCACCGGGAAGCCTGTCTATCTAATGGGAGCTGAGCGTTGTAAATGGAAGCGTTGTGATGATTTCCATAAATCACTCAAGGAGCAAGGAATGATTCGGCCATTTACAGGCTTGGAGAATAGGCTCGACTTTTGTCAGCGATGTGGAGATGTCAAGTCTGGAGGAGGAGGAGGACTGGAATTTGGGGGTTTCAATGGTGGATGGCTCGGAGGAGGAGGGTCTTCGTTTGGGTTCGGCAGCCCAACTACCGGCTCGGATGTGAAATCTGGAGGTTGGATTTGTACCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_fiss_Elm1

Protein Analysis

268

Amino Acids

29.12

Weight (kDa)

9.11

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_fiss_Elm1	PF06258	10 - 143	1.9e-31	Mitochondrial fission ELM1
Mito_fiss_Elm1	PF06258	143 - 211	3.9e-24	Mitochondrial fission ELM1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22350
fragaria_vesca	FvH4_3g25550 FvH4_3g25550 FvH4_3g25550 FvH4_3g25550 FvH4_3g25550
malus_domestica	MD03G1149300.v1.1 MD11G1168100.v1.1
prunus_persica	Prupe.6G135200_v2.0.a1
pyrus_communis	pycom03g10320 pycom11g14040
rosa_chinensis	RchiOBHm_Chr5g0046451 RchiOBHm_Chr5g0046461 RchiOBHm_Chr5g0046541
rosa_laevigata	RLG00000034412 RLG00000034415
rosa_multiflora	Rmu_sc0003878.1_g000039
rosa_roxburghii	Rroxscaffold_1G00034870
rosa_rugosa	Rorug05G0229100 Rorug05G0229500
rosa_samantha	Rh5AG309700 Rh5BG317700 Rh5BG318100 Rh5CG343700 Rh5DG327900 Rh5DG328100 Rh5DG328400
rosa_wichuraiana	Rw0G010760 Rw5G028880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	121
AccB7I	CCANNNNNTGG	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	373
AciI	CCGC	3 cut(s)	4, 437, 480
AcoI	YGGCCR	1 cut(s)	611
AcsI	RAATTY	2 cut(s)	263, 692
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	796
AfiI	CCNNNNNNNGG	5 cut(s)	252, 442, 443, 620, 761
AgsI	TTSAA	2 cut(s)	28, 706
AjnI	CCWGG	2 cut(s)	50, 797
AluBI	AGCT	5 cut(s)	206, 272, 384, 455, 545
AluI	AGCT	5 cut(s)	206, 272, 384, 455, 545
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	3 cut(s)	445, 459, 611
ApeKI	GCWGC	3 cut(s)	242, 269, 750
ApoI	RAATTY	2 cut(s)	263, 692
AspS9I	GGNCC	5 cut(s)	190, 308, 337, 445, 459
AsuC2I	CCSGG	1 cut(s)	520
AsuHPI	GGTGA	3 cut(s)	307, 469, 508
AvaII	GGWCC	3 cut(s)	190, 308, 337
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	726
BbvI	GCAGC	3 cut(s)	229, 281, 762
BccI	CCATC	2 cut(s)	456, 708
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	2 cut(s)	52, 799
BcnI	CCSGG	1 cut(s)	520
BfaI	CTAG	2 cut(s)	411, 452
BfmI	CTRYAG	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	121
BglII	AGATCT	1 cut(s)	68
BisI	GCNGC	3 cut(s)	243, 270, 751
BlpI	GCTNAGC	1 cut(s)	546
BlsI	GCNGC	3 cut(s)	244, 271, 752
Bme1390I	CCNGG	3 cut(s)	52, 520, 799
Bme18I	GGWCC	3 cut(s)	190, 308, 337
BmgT120I	GGNCC	5 cut(s)	190, 308, 337, 445, 459
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	3 cut(s)	52, 520, 799
BmsI	GCATC	6 cut(s)	67, 211, 220, 402, 454, 522
BoxI	GACNNNNGTC	1 cut(s)	645
BpiI	GAAGAC	1 cut(s)	726
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BpmI	CTGGAG	2 cut(s)	693, 801
Bpu1102I	GCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	575
BpuMI	CCSGG	1 cut(s)	520
BsaAI	YACGTR	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	5 cut(s)	252, 442, 443, 620, 761
Bse118I	RCCGGY	1 cut(s)	761
Bse1I	ACTGG	2 cut(s)	246, 693
Bse8I	GATNNNNATC	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	52, 799
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	3 cut(s)	46, 719, 775
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	5 cut(s)	252, 442, 443, 620, 761
BseMII	CTCAG	1 cut(s)	537
BseNI	ACTGG	2 cut(s)	246, 693
BseRI	GAGGAG	6 cut(s)	153, 690, 693, 696, 738, 741
BseXI	GCAGC	3 cut(s)	229, 281, 762
BshFI	GGCC	3 cut(s)	447, 461, 613
BsiSI	CCGG	2 cut(s)	519, 762
BslI	CCNNNNNNNGG	5 cut(s)	252, 442, 443, 620, 761
BsnI	GGCC	3 cut(s)	447, 461, 613
Bsp143I	GATC	1 cut(s)	68
Bsp1720I	GCTNAGC	1 cut(s)	546
BspACI	CCGC	3 cut(s)	4, 437, 480
BspANI	GGCC	3 cut(s)	447, 461, 613
BspCNI	CTCAG	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	761
BsrI	ACTGG	2 cut(s)	246, 693
BssAI	RCCGGY	1 cut(s)	761
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	1 cut(s)	68
BssNAI	GTATAC	1 cut(s)	374
BssSI	CACGAG	1 cut(s)	165
Bst1107I	GTATAC	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	52, 799
BstBAI	YACGTR	1 cut(s)	149
BstDEI	CTNAG	3 cut(s)	368, 380, 546
BstF5I	GGATG	3 cut(s)	46, 719, 775
BstKTI	GATC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 390, 479
BstNI	CCWGG	2 cut(s)	52, 799
BstNSI	RCATGY	1 cut(s)	188
BstPAI	GACNNNNGTC	1 cut(s)	645
BstSCI	CCNGG	3 cut(s)	50, 518, 797
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	229, 281, 762
BstV2I	GAAGAC	1 cut(s)	726
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BstZ17I	GTATAC	1 cut(s)	374
BsuRI	GGCC	3 cut(s)	447, 461, 613
BtgZI	GCGATG	1 cut(s)	667
BtsCI	GGATG	3 cut(s)	46, 719, 775
BtsIMutI	CAGTG	1 cut(s)	253
BveI	ACCTGC	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr10I	RCCGGY	1 cut(s)	761
Cfr13I	GGNCC	5 cut(s)	190, 308, 337, 445, 459
CsiI	ACCWGGT	1 cut(s)	797
Csp6I	GTAC	1 cut(s)	795
CviAII	CATG	3 cut(s)	185, 252, 442
CviQI	GTAC	1 cut(s)	795
DdeI	CTNAG	3 cut(s)	368, 380, 546
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	611
Eco47I	GGWCC	3 cut(s)	190, 308, 337
Eco57I	CTGAAG	1 cut(s)	138
EcoRII	CCWGG	2 cut(s)	50, 797
FaeI	CATG	3 cut(s)	188, 255, 445
FaiI	YATR	8 cut(s)	41, 186, 253, 330, 374, 403, 443, 582
FatI	CATG	3 cut(s)	184, 251, 441
FauI	CCCGC	1 cut(s)	444
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	243, 270, 751
FokI	GGATG	3 cut(s)	33, 726, 782
Fsp4HI	GCNGC	3 cut(s)	243, 270, 751
FspBI	CTAG	2 cut(s)	411, 452
GluI	GCNGC	3 cut(s)	243, 270, 751
GsuI	CTGGAG	2 cut(s)	693, 801
HaeIII	GGCC	3 cut(s)	447, 461, 613
HapII	CCGG	2 cut(s)	519, 762
Hin1II	CATG	3 cut(s)	188, 255, 445
HinfI	GANTC	3 cut(s)	112, 485, 607
HpaII	CCGG	2 cut(s)	519, 762
HphI	GGTGA	3 cut(s)	307, 469, 508
Hpy166II	GTNNAC	5 cut(s)	20, 170, 298, 337, 374
Hpy188I	TCNGA	4 cut(s)	73, 398, 722, 769
Hpy188III	TCNNGA	5 cut(s)	116, 167, 176, 672, 780
Hpy8I	GTNNAC	5 cut(s)	20, 170, 298, 337, 374
HpyAV	CCTTC	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	5 cut(s)	58, 211, 251, 269, 513
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 390, 479
HpyF3I	CTNAG	3 cut(s)	368, 380, 546
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	3 cut(s)	188, 255, 445
Kzo9I	GATC	1 cut(s)	68
LmnI	GCTCC	3 cut(s)	203, 542, 595
Lsp1109I	GCAGC	3 cut(s)	229, 281, 762
LweI	GCATC	6 cut(s)	67, 211, 220, 402, 454, 522
MabI	ACCWGGT	1 cut(s)	797
MaeI	CTAG	2 cut(s)	411, 452
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MboII	GAAGA	1 cut(s)	726
MfeI	CAATTG	2 cut(s)	319, 350
MflI	RGATCY	1 cut(s)	68
MluCI	AATT	6 cut(s)	140, 216, 263, 319, 350, 692
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	767
MseI	TTAA	1 cut(s)	11
MspI	CCGG	2 cut(s)	519, 762
MspR9I	CCNGG	3 cut(s)	52, 520, 799
MunI	CAATTG	2 cut(s)	319, 350
MvaI	CCWGG	2 cut(s)	52, 799
MwoI	GCNNNNNNNGC	3 cut(s)	248, 390, 479
NciI	CCSGG	1 cut(s)	520
NdeII	GATC	1 cut(s)	68
NlaIII	CATG	3 cut(s)	188, 255, 445
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	475
NspI	RCATGY	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	485, 607
PflMI	CCANNNNNTGG	1 cut(s)	252
PkrI	GCNGC	3 cut(s)	244, 271, 752
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Ppu21I	YACGTR	1 cut(s)	149
PshAI	GACNNNNGTC	1 cut(s)	645
Psp6I	CCWGG	2 cut(s)	50, 797
PspGI	CCWGG	2 cut(s)	50, 797
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	5 cut(s)	190, 308, 337, 445, 459
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	68
RsaI	GTAC	1 cut(s)	796
RsaNI	GTAC	1 cut(s)	795
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	3 cut(s)	243, 270, 751
Sau3AI	GATC	1 cut(s)	68
Sau96I	GGNCC	5 cut(s)	190, 308, 337, 445, 459
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	3 cut(s)	52, 520, 799
SexAI	ACCWGGT	1 cut(s)	797
SfaNI	GCATC	6 cut(s)	67, 211, 220, 402, 454, 522
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	3 cut(s)	190, 308, 337
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	6 cut(s)	140, 216, 263, 319, 350, 692
SsiI	CCGC	3 cut(s)	4, 437, 480
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	2 cut(s)	411, 452
StyD4I	CCNGG	3 cut(s)	50, 518, 797
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	1 cut(s)	639
TasI	AATT	6 cut(s)	140, 216, 263, 319, 350, 692
TfiI	GAWTC	2 cut(s)	485, 607
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	3 cut(s)	242, 269, 750
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	252
VpaK11BI	GGWCC	3 cut(s)	190, 308, 337
XapI	RAATTY	2 cut(s)	263, 692
XceI	RCATGY	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	373
XspI	CTAG	2 cut(s)	411, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.