Rw5G028880

Mitochondrial fission protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0005245
Physical Location & Seq
Reverse (-)
43855831 .. 43860123
4293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G028880.1

Sequence Viewer

Length: 756 bp
ATGAGGCCGATACGTCTTCCTGAGCCGCCCAGCTCCAAAATGGGGACGCCGGAAATCTTCGAAGGCGGCGTGTACGGCGTCGTACGCCGCGCCGTCAATCAGAGTATCGGCCTGGTTCGCGCTCTCGGCCTCGCCGACAAGCACGTCGTGTATCGAGTTACAAGGCCAAGAGGAGGTCTAAATGAGTGGCTTCACTGGCTCCCGGTTTCTGTTCACAAGAAGTTGGATTGTGTCATAAGGAAGATGTGTATTTTGTTAATATATCGGGGGCAGAAAGTTGGGTCTCTACCAACAGAAAATGGTGGCAGTGCTGGGTTGAAATGTGTCTTAGAAGCTGATGTTCAGGAGATTGTAACCATGGCTCGTCGGACTTATGAAAAGGATGGACCCATACTGGTGGTAGCTTGTGGCAGGGATACTATTTCCATTGCAAGTTCTATTAGACGACTAGCATATGAAAACGTCTTTGTTGTTCAGATACAACATCCCAGGTTGCATCTCATAGATTTGACTTGCACAAAGAAGCAGGTTCCTCAATTTCTACGTGGGTGGATAACTCCTCGTGAGCCTCCTGACAGGCATGTGGTCCTCACTATTGGAGCTTTGCATCAAATTGATGCTACTGCCCTTCGTAATGCTGCCAGTGCATGGCGTGATGAATTTGCAGCTCTACCAAAGCCCTTACTTGTGGTGAACATTGGTGGTCCTACAAGTAATCTTTTGTCATACACTGAATCTTTGTTGCTTGTTACTTAA

Protein Analysis

251

Amino Acids

27.82

Weight (kDa)

9.71

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_fiss_Elm1 PF06258 32 - 240 3.8e-34 Mitochondrial fission ELM1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 517
AccB7I CCANNNNNTGG 1 cut(s) 648
AccII CGCG 2 cut(s) 90, 120
AciI CCGC 3 cut(s) 26, 66, 88
AcsI RAATTY 1 cut(s) 659
AcyI GRCGYC 2 cut(s) 47, 78
AdeI CACNNNGTG 1 cut(s) 148
AfaI GTAC 2 cut(s) 74, 84
AfiI CCNNNNNNNGG 3 cut(s) 42, 173, 648
AgsI TTSAA 1 cut(s) 319
AjiI CACGTC 1 cut(s) 145
AjnI CCWGG 2 cut(s) 111, 488
AluBI AGCT 5 cut(s) 33, 335, 404, 602, 668
AluI AGCT 5 cut(s) 33, 335, 404, 602, 668
Alw26I GTCTC 1 cut(s) 288
AoxI GGCC 4 cut(s) 5, 109, 127, 164
ApeKI GCWGC 2 cut(s) 638, 665
ApoI RAATTY 1 cut(s) 659
AspLEI GCGC 2 cut(s) 92, 122
AspS9I GGNCC 3 cut(s) 386, 586, 704
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 703
AsuII TTCGAA 1 cut(s) 60
AvaII GGWCC 3 cut(s) 386, 586, 704
BauI CACGAG 1 cut(s) 561
BbsI GAAGAC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 625, 677
BccI CCATC 1 cut(s) 377
BceAI ACGGC 2 cut(s) 77, 91
BciT130I CCWGG 2 cut(s) 113, 490
BciVI GTATCC 1 cut(s) 409
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 1 cut(s) 449
BfuAI ACCTGC 1 cut(s) 517
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 5 cut(s) 26, 67, 88, 639, 666
BlsI GCNGC 5 cut(s) 27, 68, 89, 640, 667
Bme1390I CCNGG 3 cut(s) 113, 203, 490
Bme18I GGWCC 3 cut(s) 386, 586, 704
BmgBI CACGTC 1 cut(s) 145
BmgT120I GGNCC 3 cut(s) 386, 586, 704
BmiI GGNNCC 3 cut(s) 200, 388, 531
BmrFI CCNGG 3 cut(s) 113, 203, 490
BmsI GCATC 3 cut(s) 505, 607, 616
BpiI GAAGAC 1 cut(s) 8
Bpu10I CCTNAGC 1 cut(s) 21
Bpu14I TTCGAA 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 545
BsaHI GRCGYC 2 cut(s) 47, 78
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 357, 488
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 173, 648
Bse1I ACTGG 3 cut(s) 200, 399, 642
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 2 cut(s) 113, 490
BseDI CCNNGG 2 cut(s) 357, 488
BseGI GGATG 2 cut(s) 388, 484
BseLI CCNNNNNNNGG 3 cut(s) 42, 173, 648
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 3 cut(s) 200, 399, 642
BseRI GAGGAG 2 cut(s) 186, 549
BseXI GCAGC 2 cut(s) 625, 677
BseYI CCCAGC 2 cut(s) 29, 311
Bsh1236I CGCG 2 cut(s) 90, 120
BshFI GGCC 4 cut(s) 7, 111, 129, 166
BsiSI CCGG 2 cut(s) 50, 203
BsiWI CGTACG 1 cut(s) 82
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 3 cut(s) 42, 173, 648
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 4 cut(s) 7, 111, 129, 166
Bso31I GGTCTC 1 cut(s) 288
Bsp119I TTCGAA 1 cut(s) 60
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 3 cut(s) 26, 66, 88
BspANI GGCC 4 cut(s) 7, 111, 129, 166
BspCNI CTCAG 1 cut(s) 13
BspFNI CGCG 2 cut(s) 90, 120
BspLI GGNNCC 3 cut(s) 200, 388, 531
BspMI ACCTGC 1 cut(s) 517
BspT104I TTCGAA 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 426
BsrI ACTGG 3 cut(s) 200, 399, 642
BssECI CCNNGG 2 cut(s) 357, 488
BssNI GRCGYC 2 cut(s) 47, 78
BssSI CACGAG 1 cut(s) 561
BssT1I CCWWGG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 561
Bst2UI CCWGG 2 cut(s) 113, 490
BstACI GRCGYC 2 cut(s) 47, 78
BstBAI YACGTR 1 cut(s) 545
BstBI TTCGAA 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 21, 328
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 388, 484
BstFNI CGCG 2 cut(s) 90, 120
BstHHI GCGC 2 cut(s) 92, 122
BstMAI GTCTC 1 cut(s) 288
BstMWI GCNNNNNNNGC 6 cut(s) 75, 84, 117, 126, 196, 644
BstNI CCWGG 2 cut(s) 113, 490
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 3 cut(s) 111, 201, 488
BstUI CGCG 2 cut(s) 90, 120
BstV1I GCAGC 2 cut(s) 625, 677
BstV2I GAAGAC 1 cut(s) 8
BstXI CCANNNNNNTGG 1 cut(s) 397
BsuI GTATCC 1 cut(s) 409
BsuRI GGCC 4 cut(s) 7, 111, 129, 166
BtgI CCRYGG 1 cut(s) 357
BtrI CACGTC 1 cut(s) 145
BtsCI GGATG 2 cut(s) 388, 484
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 4 cut(s) 193, 313, 649, 729
BveI ACCTGC 1 cut(s) 517
CfoI GCGC 2 cut(s) 92, 122
Cfr13I GGNCC 3 cut(s) 386, 586, 704
CseI GACGC 2 cut(s) 55, 67
Csp6I GTAC 2 cut(s) 73, 83
CviAII CATG 3 cut(s) 358, 581, 648
CviQI GTAC 2 cut(s) 73, 83
DdeI CTNAG 2 cut(s) 21, 328
DraIII CACNNNGTG 1 cut(s) 148
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 357
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 3 cut(s) 386, 586, 704
EcoRII CCWGG 2 cut(s) 111, 488
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 3 cut(s) 361, 584, 651
FaqI GGGAC 1 cut(s) 58
FatI CATG 3 cut(s) 357, 580, 647
FauNDI CATATG 1 cut(s) 454
Fnu4HI GCNGC 5 cut(s) 26, 67, 88, 639, 666
FokI GGATG 2 cut(s) 395, 471
Fsp4HI GCNGC 5 cut(s) 26, 67, 88, 639, 666
FspBI CTAG 1 cut(s) 449
GlaI GCGC 2 cut(s) 91, 121
GluI GCNGC 5 cut(s) 26, 67, 88, 639, 666
GsaI CCCAGC 2 cut(s) 33, 315
HaeIII GGCC 4 cut(s) 7, 111, 129, 166
HapII CCGG 2 cut(s) 50, 203
HgaI GACGC 2 cut(s) 55, 67
HhaI GCGC 2 cut(s) 92, 122
Hin1I GRCGYC 2 cut(s) 47, 78
Hin1II CATG 3 cut(s) 361, 584, 651
Hin6I GCGC 2 cut(s) 90, 120
HinP1I GCGC 2 cut(s) 90, 120
HinfI GANTC 1 cut(s) 734
HpaII CCGG 2 cut(s) 50, 203
HphI GGTGA 1 cut(s) 703
Hpy166II GTNNAC 3 cut(s) 73, 214, 694
Hpy188I TCNGA 3 cut(s) 102, 369, 477
Hpy188III TCNNGA 4 cut(s) 20, 344, 563, 572
Hpy8I GTNNAC 3 cut(s) 73, 214, 694
Hpy99I CGWCG 3 cut(s) 83, 149, 369
HpyAV CCTTC 2 cut(s) 56, 638
HpyCH4IV ACGT 4 cut(s) 13, 144, 462, 544
HpyCH4V TGCA 6 cut(s) 431, 496, 516, 607, 647, 665
HpyF10VI GCNNNNNNNGC 6 cut(s) 75, 84, 117, 126, 196, 644
HpyF3I CTNAG 2 cut(s) 21, 328
HpySE526I ACGT 4 cut(s) 13, 144, 462, 544
Hsp92I GRCGYC 2 cut(s) 47, 78
Hsp92II CATG 3 cut(s) 361, 584, 651
HspAI GCGC 2 cut(s) 90, 120
LmnI GCTCC 3 cut(s) 38, 204, 599
Lsp1109I GCAGC 2 cut(s) 625, 677
LweI GCATC 3 cut(s) 505, 607, 616
MaeI CTAG 1 cut(s) 449
MaeII ACGT 4 cut(s) 13, 144, 462, 544
MaeIII GTNAC 3 cut(s) 157, 352, 748
MboII GAAGA 3 cut(s) 8, 49, 253
MluCI AATT 3 cut(s) 536, 612, 659
MmeI TCCRAC 2 cut(s) 204, 347
MnlI CCTC 7 cut(s) 140, 164, 167, 543, 570, 579, 599
MseI TTAA 2 cut(s) 257, 754
MslI CAYNNNNRTG 1 cut(s) 395
MspI CCGG 2 cut(s) 50, 203
MspR9I CCNGG 3 cut(s) 113, 203, 490
MvaI CCWGG 2 cut(s) 113, 490
MvnI CGCG 2 cut(s) 90, 120
MwoI GCNNNNNNNGC 6 cut(s) 75, 84, 117, 126, 196, 644
NciI CCSGG 1 cut(s) 203
NcoI CCATGG 1 cut(s) 357
NdeI CATATG 1 cut(s) 454
NlaIII CATG 3 cut(s) 361, 584, 651
NlaIV GGNNCC 3 cut(s) 200, 388, 531
NmeAIII GCCGAG 1 cut(s) 105
NspI RCATGY 1 cut(s) 584
NspV TTCGAA 1 cut(s) 60
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 132
PfeI GAWTC 1 cut(s) 734
Pfl23II CGTACG 1 cut(s) 82
PflMI CCANNNNNTGG 1 cut(s) 648
PkrI GCNGC 5 cut(s) 27, 68, 89, 640, 667
Ppu21I YACGTR 1 cut(s) 545
Psp6I CCWGG 2 cut(s) 111, 488
PspFI CCCAGC 2 cut(s) 29, 311
PspGI CCWGG 2 cut(s) 111, 488
PspLI CGTACG 1 cut(s) 82
PspN4I GGNNCC 3 cut(s) 200, 388, 531
PspPI GGNCC 3 cut(s) 386, 586, 704
RsaI GTAC 2 cut(s) 74, 84
RsaNI GTAC 2 cut(s) 73, 83
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 2 cut(s) 257, 754
SatI GCNGC 5 cut(s) 26, 67, 88, 639, 666
Sau96I GGNCC 3 cut(s) 386, 586, 704
ScrFI CCNGG 3 cut(s) 113, 203, 490
SfaNI GCATC 3 cut(s) 505, 607, 616
SfuI TTCGAA 1 cut(s) 60
SinI GGWCC 3 cut(s) 386, 586, 704
SmiMI CAYNNNNRTG 1 cut(s) 395
Sse9I AATT 3 cut(s) 536, 612, 659
SsiI CCGC 3 cut(s) 26, 66, 88
SspMI CTAG 1 cut(s) 449
StyD4I CCNGG 3 cut(s) 111, 201, 488
StyI CCWWGG 1 cut(s) 357
TaiI ACGT 4 cut(s) 16, 147, 465, 547
TaqI TCGA 2 cut(s) 60, 154
TasI AATT 3 cut(s) 536, 612, 659
TauI GCSGC 3 cut(s) 28, 69, 90
TfiI GAWTC 1 cut(s) 734
Tru1I TTAA 2 cut(s) 257, 754
Tru9I TTAA 2 cut(s) 257, 754
TscAI CASTG 4 cut(s) 200, 313, 649, 736
TseI GCWGC 2 cut(s) 638, 665
TspDTI ATGAA 3 cut(s) 390, 471, 672
TspRI CASTG 4 cut(s) 200, 313, 649, 736
Van91I CCANNNNNTGG 1 cut(s) 648
VpaK11BI GGWCC 3 cut(s) 386, 586, 704
XapI RAATTY 1 cut(s) 659
XceI RCATGY 1 cut(s) 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XspI CTAG 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.