Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00462

Orthogroup ID

OG0005245

Physical Location & Seq

Genomic Coordinates Reverse (-)

8914 .. 14798

Gene Structure 5885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G010760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCAGCGAGTTACAAGGCCAAGAGGTGGTCTAAATGAGTGGCTTCACTGGCTCCCGGTTTCTGTTCACAAGAAGTTGGATTGCGTCGTAAGGAAGATGTGTATTTTCTTAATGTATCGGGGCCAGAAAGTTGGGTCTCTACCAACAGAAAATGGTGGCAGTGCTGGGTTGAAATGTGTCTTAGAAGCTGATGTCCAGGAGATTGTAACCATGGCTTGTCGGACTTATGAAAAGGATGGACCCATACTGGTGGTAACTTGTGGCAGGGATAATATTTCCATTGTAAGTTCTATTAGACGACTAGCATCTGAAAACATCTTTGTTGTTCTGATACAACATCCCAGGTTGCATCTCAATAGATTTGACTTGGTTATTACCCCGAAACACGATTACTATCCTTTGACTCCTGAAGCACAGAAGCAGGTTCCTCAATTTCTTCGTGGGTGGATAACTCCTCGTGAACCTCCTGGCAGGCATGTGGTCCTCACTATTGGAGCTTTGCATCAAATTGATGCTACTGCCCTTCGGAATGCTGCCAGTGCTTGTTGCTTATTGGATTGGCTTCAAAGCAATTGTCGTTATGGTGTGGACCTTGCGAAGCAATTGGCAACCTATTTGCTTAGTGTTCTTGTAAGCTGTGGAAGCATCAGAATATGTTTCTCTAGTAGAACACCTGAAAAGGTATCCAATGTTATAACAAAGGAGCTCGGAGGTAATCCAAAAGTTTACATTTGGGATGGTCAAGGTAACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_fiss_Elm1

Protein Analysis

251

Amino Acids

28.11

Weight (kDa)

9.22

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_fiss_Elm1	PF06258	37 - 249	2.7e-41	Mitochondrial fission ELM1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22350
fragaria_vesca	FvH4_3g25550 FvH4_3g25550 FvH4_3g25550 FvH4_3g25550 FvH4_3g25550
malus_domestica	MD03G1149300.v1.1 MD11G1168100.v1.1
prunus_persica	Prupe.6G135200_v2.0.a1
pyrus_communis	pycom03g10320 pycom11g14040
rosa_chinensis	RchiOBHm_Chr5g0046451 RchiOBHm_Chr5g0046461 RchiOBHm_Chr5g0046541
rosa_laevigata	RLG00000034412 RLG00000034415
rosa_multiflora	Rmu_sc0003878.1_g000039
rosa_roxburghii	Rroxscaffold_1G00034870
rosa_rugosa	Rorug05G0229100 Rorug05G0229500
rosa_samantha	Rh5AG309700 Rh5BG317700 Rh5BG318100 Rh5CG343700 Rh5DG327900 Rh5DG328100 Rh5DG328400
rosa_wichuraiana	Rw0G010760 Rw5G028880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	695
Acc36I	ACCTGC	1 cut(s)	412
AccB7I	CCANNNNNTGG	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	750
AgsI	TTSAA	2 cut(s)	172, 566
AjnI	CCWGG	3 cut(s)	195, 341, 466
AluBI	AGCT	4 cut(s)	188, 497, 636, 706
AluI	AGCT	4 cut(s)	188, 497, 636, 706
Alw21I	GWGCWC	1 cut(s)	708
Alw26I	GTCTC	1 cut(s)	141
AoxI	GGCC	2 cut(s)	17, 121
ApeKI	GCWGC	2 cut(s)	4, 533
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AspS9I	GGNCC	4 cut(s)	121, 239, 481, 589
AsuC2I	CCSGG	1 cut(s)	56
AvaII	GGWCC	3 cut(s)	239, 481, 589
BanII	GRGCYC	1 cut(s)	708
BauI	CACGAG	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	708
BbvI	GCAGC	2 cut(s)	16, 520
BccI	CCATC	2 cut(s)	230, 731
BciT130I	CCWGG	3 cut(s)	197, 343, 468
BciVI	GTATCC	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	2 cut(s)	302, 663
BfuAI	ACCTGC	1 cut(s)	412
BfuI	GTATCC	1 cut(s)	694
BisI	GCNGC	2 cut(s)	5, 534
BlsI	GCNGC	2 cut(s)	6, 535
Bme1390I	CCNGG	4 cut(s)	56, 197, 343, 468
Bme18I	GGWCC	3 cut(s)	239, 481, 589
BmgT120I	GGNCC	4 cut(s)	121, 239, 481, 589
BmiI	GGNNCC	4 cut(s)	53, 122, 241, 426
BmrFI	CCNGG	4 cut(s)	56, 197, 343, 468
BmsI	GCATC	5 cut(s)	314, 358, 502, 511, 654
BpuMI	CCSGG	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	210, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	3 cut(s)	53, 252, 537
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	3 cut(s)	197, 343, 468
BseDI	CCNNGG	2 cut(s)	210, 341
BseGI	GGATG	3 cut(s)	241, 337, 742
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseNI	ACTGG	3 cut(s)	53, 252, 537
BseRI	GAGGAG	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	16, 520
BseYI	CCCAGC	1 cut(s)	164
BshFI	GGCC	2 cut(s)	19, 123
BsiHKAI	GWGCWC	1 cut(s)	708
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	19, 123
Bso31I	GGTCTC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp19I	CCATGG	1 cut(s)	210
BspANI	GGCC	2 cut(s)	19, 123
BspLI	GGNNCC	4 cut(s)	53, 122, 241, 426
BspMI	ACCTGC	1 cut(s)	412
BspTNI	GGTCTC	1 cut(s)	141
BsrI	ACTGG	3 cut(s)	53, 252, 537
BssECI	CCNNGG	2 cut(s)	210, 341
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	3 cut(s)	197, 343, 468
BstC8I	GCNNGC	1 cut(s)	473
BstDEI	CTNAG	2 cut(s)	181, 620
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	3 cut(s)	241, 337, 742
BstMAI	GTCTC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 539, 642
BstNI	CCWGG	3 cut(s)	197, 343, 468
BstNSI	RCATGY	2 cut(s)	479, 754
BstSCI	CCNGG	4 cut(s)	54, 195, 341, 466
BstV1I	GCAGC	2 cut(s)	16, 520
BstXI	CCANNNNNNTGG	2 cut(s)	131, 250
BsuI	GTATCC	1 cut(s)	694
BsuRI	GGCC	2 cut(s)	19, 123
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	241, 337, 742
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	3 cut(s)	46, 166, 544
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	473
Cfr13I	GGNCC	4 cut(s)	121, 239, 481, 589
CseI	GACGC	1 cut(s)	73
CviAII	CATG	3 cut(s)	211, 476, 751
DdeI	CTNAG	2 cut(s)	181, 620
Ecl136II	GAGCTC	1 cut(s)	706
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	708
Eco31I	GGTCTC	1 cut(s)	141
Eco47I	GGWCC	3 cut(s)	239, 481, 589
Eco53kI	GAGCTC	1 cut(s)	706
Eco57I	CTGAAG	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	706
EcoRII	CCWGG	3 cut(s)	195, 341, 466
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	708
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	214, 479, 754
FaiI	YATR	8 cut(s)	212, 228, 245, 477, 582, 655, 695, 752
FatI	CATG	3 cut(s)	210, 475, 750
Fnu4HI	GCNGC	2 cut(s)	5, 534
FokI	GGATG	3 cut(s)	248, 324, 749
FriOI	GRGCYC	1 cut(s)	708
Fsp4HI	GCNGC	2 cut(s)	5, 534
FspBI	CTAG	2 cut(s)	302, 663
GluI	GCNGC	2 cut(s)	5, 534
GsaI	CCCAGC	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	19, 123
HapII	CCGG	1 cut(s)	56
HgaI	GACGC	1 cut(s)	73
Hin1II	CATG	3 cut(s)	214, 479, 754
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	1 cut(s)	56
Hpy166II	GTNNAC	4 cut(s)	67, 461, 589, 727
Hpy188I	TCNGA	6 cut(s)	222, 310, 330, 528, 650, 710
Hpy188III	TCNNGA	2 cut(s)	407, 458
Hpy8I	GTNNAC	4 cut(s)	67, 461, 589, 727
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	533
HpyCH4V	TGCA	3 cut(s)	4, 349, 502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 539, 642
HpyF3I	CTNAG	2 cut(s)	181, 620
Hsp92II	CATG	3 cut(s)	214, 479, 754
LmnI	GCTCC	3 cut(s)	57, 494, 703
Lsp1109I	GCAGC	2 cut(s)	16, 520
LweI	GCATC	5 cut(s)	314, 358, 502, 511, 654
MaeI	CTAG	2 cut(s)	302, 663
MaeIII	GTNAC	4 cut(s)	10, 205, 253, 746
MboII	GAAGA	2 cut(s)	106, 428
MfeI	CAATTG	2 cut(s)	571, 602
MhlI	GDGCHC	1 cut(s)	708
MluCI	AATT	4 cut(s)	431, 507, 571, 602
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	2 cut(s)	57, 200
MnlI	CCTC	6 cut(s)	17, 438, 465, 474, 494, 704
MseI	TTAA	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	248
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	4 cut(s)	56, 197, 343, 468
MunI	CAATTG	2 cut(s)	571, 602
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	3 cut(s)	197, 343, 468
MwoI	GCNNNNNNNGC	3 cut(s)	49, 539, 642
NciI	CCSGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	210
NlaIII	CATG	3 cut(s)	214, 479, 754
NlaIV	GGNNCC	4 cut(s)	53, 122, 241, 426
NspI	RCATGY	2 cut(s)	479, 754
PciI	ACATGT	1 cut(s)	750
PctI	GAATGC	1 cut(s)	535
PflMI	CCANNNNNTGG	1 cut(s)	26
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	6, 535
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PscI	ACATGT	1 cut(s)	750
PsiI	TTATAA	1 cut(s)	695
Psp124BI	GAGCTC	1 cut(s)	708
Psp6I	CCWGG	3 cut(s)	195, 341, 466
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	3 cut(s)	195, 341, 466
PspN4I	GGNNCC	4 cut(s)	53, 122, 241, 426
PspPI	GGNCC	4 cut(s)	121, 239, 481, 589
RseI	CAYNNNNRTG	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	708
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	2 cut(s)	5, 534
Sau96I	GGNCC	4 cut(s)	121, 239, 481, 589
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	4 cut(s)	56, 197, 343, 468
SduI	GDGCHC	1 cut(s)	708
SfaNI	GCATC	5 cut(s)	314, 358, 502, 511, 654
SinI	GGWCC	3 cut(s)	239, 481, 589
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	4 cut(s)	431, 507, 571, 602
SspI	AATATT	1 cut(s)	274
SspMI	CTAG	2 cut(s)	302, 663
SstI	GAGCTC	1 cut(s)	708
StyD4I	CCNGG	4 cut(s)	54, 195, 341, 466
StyI	CCWWGG	1 cut(s)	210
TasI	AATT	4 cut(s)	431, 507, 571, 602
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	3 cut(s)	53, 166, 544
TseI	GCWGC	2 cut(s)	4, 533
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	3 cut(s)	53, 166, 544
Van91I	CCANNNNNTGG	1 cut(s)	26
VpaK11BI	GGWCC	3 cut(s)	239, 481, 589
XceI	RCATGY	2 cut(s)	479, 754
XspI	CTAG	2 cut(s)	302, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.