Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005245

Physical Location & Seq

Genomic Coordinates Reverse (-)

43114752 .. 43138827

Gene Structure 24076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG328100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCGAGTTTCAAGGCCAAGAGGTGGTCTAAATGAGTGGCTTCACTGGCTCCCGGTTTCTGTTCACAAGAAGTTGGATTGCGTCGTAAGGAAGATGTGTATTTTCTTAATATATCGGGGCCAGAAAGTTGGGTCTCTACCAACAGAAAATGGTGGCAGTGCTGGGTTGAAATGTGTCTTAGAAGCTGATGTCCAGGAGATTGTAACCATGGCTTGTCGGACTTATGAGAAGGATGGACCCATACTGTGGGTAACTTGTGGCAGGGATACTATTTCCATTGTAAGTTCTATTAGACGACTAGCATCTGAAAACATCTTTGTTGTTCTGGTTTATACAACATCCGATAGATTTGACTTGGATTTTACCCCGAAACACGATTACTATCCTTTGACTCCTGAAGCACAGAAGCAGGTTCCTCAATTTCTACGTGGGTGGATAACTCCTCGTGAACCTCCTGACAGGCATGTCCTCACTATTGGAGCTTTGCATCAAATTGATGCTACTGCCCTTCGAAATGCTGCCAGTGCATGGCGTGCTGAATTTGCAGCTTTACCAAAGCCCTTACTTGTGGTGAACATTGGTGGTCCTACTAGTAATCTTTTGTCATACACTGAATCTTTGTTGCTTGTCGCTTATTGGATTGGCTTTAAAGTATTTGATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_fiss_Elm1

Protein Analysis

221

Amino Acids

24.9

Weight (kDa)

8.8

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_fiss_Elm1	PF06258	36 - 200	4.1e-29	Mitochondrial fission ELM1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22350
fragaria_vesca	FvH4_3g25550 FvH4_3g25550 FvH4_3g25550 FvH4_3g25550 FvH4_3g25550
malus_domestica	MD03G1149300.v1.1 MD11G1168100.v1.1
prunus_persica	Prupe.6G135200_v2.0.a1
pyrus_communis	pycom03g10320 pycom11g14040
rosa_chinensis	RchiOBHm_Chr5g0046451 RchiOBHm_Chr5g0046461 RchiOBHm_Chr5g0046541
rosa_laevigata	RLG00000034412 RLG00000034415
rosa_multiflora	Rmu_sc0003878.1_g000039
rosa_roxburghii	Rroxscaffold_1G00034870
rosa_rugosa	Rorug05G0229100 Rorug05G0229500
rosa_samantha	Rh5AG309700 Rh5BG317700 Rh5BG318100 Rh5CG343700 Rh5DG327900 Rh5DG328100 Rh5DG328400
rosa_wichuraiana	Rw0G010760 Rw5G028880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
Acc36I	ACCTGC	1 cut(s)	400
AccB7I	CCANNNNNTGG	3 cut(s)	23, 246, 528
AcsI	RAATTY	1 cut(s)	539
AcuI	CTGAAG	1 cut(s)	417
AfiI	CCNNNNNNNGG	3 cut(s)	23, 246, 528
AgsI	TTSAA	2 cut(s)	12, 169
AhlI	ACTAGT	1 cut(s)	590
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	3 cut(s)	185, 482, 548
AluI	AGCT	3 cut(s)	185, 482, 548
Alw26I	GTCTC	1 cut(s)	138
AoxI	GGCC	2 cut(s)	14, 118
ApeKI	GCWGC	2 cut(s)	518, 545
ApoI	RAATTY	1 cut(s)	539
AspS9I	GGNCC	3 cut(s)	118, 236, 584
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	583
AsuII	TTCGAA	1 cut(s)	511
AvaII	GGWCC	2 cut(s)	236, 584
BauI	CACGAG	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	505, 557
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	138
BcuI	ACTAGT	1 cut(s)	590
BfaI	CTAG	2 cut(s)	299, 591
BfuAI	ACCTGC	1 cut(s)	400
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	2 cut(s)	519, 546
BlsI	GCNGC	2 cut(s)	520, 547
Bme1390I	CCNGG	2 cut(s)	53, 194
Bme18I	GGWCC	2 cut(s)	236, 584
BmgT120I	GGNCC	3 cut(s)	118, 236, 584
BmiI	GGNNCC	4 cut(s)	50, 119, 238, 414
BmrFI	CCNGG	2 cut(s)	53, 194
BmsI	GCATC	3 cut(s)	311, 487, 496
Bpu14I	TTCGAA	1 cut(s)	511
BpuMI	CCSGG	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 246, 528
Bse1I	ACTGG	2 cut(s)	50, 522
Bse8I	GATNNNNATC	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	2 cut(s)	238, 338
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	3 cut(s)	23, 246, 528
BseNI	ACTGG	2 cut(s)	50, 522
BseRI	GAGGAG	1 cut(s)	432
BseXI	GCAGC	2 cut(s)	505, 557
BseYI	CCCAGC	1 cut(s)	161
BshFI	GGCC	2 cut(s)	16, 120
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	3 cut(s)	23, 246, 528
BsmAI	GTCTC	1 cut(s)	138
BsnI	GGCC	2 cut(s)	16, 120
Bso31I	GGTCTC	1 cut(s)	138
Bsp119I	TTCGAA	1 cut(s)	511
Bsp19I	CCATGG	1 cut(s)	207
BspANI	GGCC	2 cut(s)	16, 120
BspLI	GGNNCC	4 cut(s)	50, 119, 238, 414
BspMI	ACCTGC	1 cut(s)	400
BspT104I	TTCGAA	1 cut(s)	511
BspTNI	GGTCTC	1 cut(s)	138
BsrI	ACTGG	2 cut(s)	50, 522
BssECI	CCNNGG	1 cut(s)	207
BssSI	CACGAG	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	207
Bst2BI	CACGAG	1 cut(s)	444
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstBAI	YACGTR	1 cut(s)	428
BstBI	TTCGAA	1 cut(s)	511
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	1 cut(s)	178
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	238, 338
BstMAI	GTCTC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 524, 533, 542
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	51, 192
BstV1I	GCAGC	2 cut(s)	505, 557
BstXI	CCANNNNNNTGG	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	16, 120
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	238, 338
BtsI	GCAGTG	1 cut(s)	163
BtsIMutI	CAGTG	4 cut(s)	43, 163, 529, 609
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	534
Cfr13I	GGNCC	3 cut(s)	118, 236, 584
CseI	GACGC	1 cut(s)	70
CviAII	CATG	3 cut(s)	208, 464, 528
DdeI	CTNAG	1 cut(s)	178
DraI	TTTAAA	1 cut(s)	649
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	236, 584
Eco57I	CTGAAG	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	3 cut(s)	211, 467, 531
FaiI	YATR	8 cut(s)	112, 209, 225, 242, 333, 465, 529, 607
FatI	CATG	3 cut(s)	207, 463, 527
Fnu4HI	GCNGC	2 cut(s)	519, 546
FokI	GGATG	2 cut(s)	245, 325
Fsp4HI	GCNGC	2 cut(s)	519, 546
FspBI	CTAG	2 cut(s)	299, 591
GluI	GCNGC	2 cut(s)	519, 546
GsaI	CCCAGC	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	16, 120
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	70
Hin1II	CATG	3 cut(s)	211, 467, 531
HinfI	GANTC	2 cut(s)	391, 614
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	3 cut(s)	64, 449, 574
Hpy188I	TCNGA	3 cut(s)	219, 307, 343
Hpy188III	TCNNGA	3 cut(s)	395, 446, 455
Hpy8I	GTNNAC	3 cut(s)	64, 449, 574
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	223, 518
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	3 cut(s)	487, 527, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 524, 533, 542
HpyF3I	CTNAG	1 cut(s)	178
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	3 cut(s)	211, 467, 531
LmnI	GCTCC	2 cut(s)	54, 479
Lsp1109I	GCAGC	2 cut(s)	505, 557
LweI	GCATC	3 cut(s)	311, 487, 496
MaeI	CTAG	2 cut(s)	299, 591
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	2 cut(s)	202, 250
MboII	GAAGA	1 cut(s)	103
MluCI	AATT	3 cut(s)	419, 492, 539
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	2 cut(s)	54, 197
MnlI	CCTC	5 cut(s)	14, 426, 453, 462, 479
MseI	TTAA	2 cut(s)	107, 648
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	53, 194
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	4 cut(s)	46, 524, 533, 542
NciI	CCSGG	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	207
NlaIII	CATG	3 cut(s)	211, 467, 531
NlaIV	GGNNCC	4 cut(s)	50, 119, 238, 414
NspI	RCATGY	1 cut(s)	467
NspV	TTCGAA	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	614
PflMI	CCANNNNNTGG	3 cut(s)	23, 246, 528
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	2 cut(s)	520, 547
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Ppu21I	YACGTR	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	4 cut(s)	50, 119, 238, 414
PspPI	GGNCC	3 cut(s)	118, 236, 584
SaqAI	TTAA	2 cut(s)	107, 648
SatI	GCNGC	2 cut(s)	519, 546
Sau96I	GGNCC	3 cut(s)	118, 236, 584
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	2 cut(s)	53, 194
SetI	ASST	7 cut(s)	25, 187, 414, 430, 454, 484, 550
SfaNI	GCATC	3 cut(s)	311, 487, 496
SfuI	TTCGAA	1 cut(s)	511
SinI	GGWCC	2 cut(s)	236, 584
SpeI	ACTAGT	1 cut(s)	590
Sse9I	AATT	3 cut(s)	419, 492, 539
SspMI	CTAG	2 cut(s)	299, 591
StyD4I	CCNGG	2 cut(s)	51, 192
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	246
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	1 cut(s)	511
TasI	AATT	3 cut(s)	419, 492, 539
TfiI	GAWTC	1 cut(s)	614
Tru1I	TTAA	2 cut(s)	107, 648
Tru9I	TTAA	2 cut(s)	107, 648
TscAI	CASTG	4 cut(s)	50, 163, 529, 616
TseI	GCWGC	2 cut(s)	518, 545
TspRI	CASTG	4 cut(s)	50, 163, 529, 616
Van91I	CCANNNNNTGG	3 cut(s)	23, 246, 528
VpaK11BI	GGWCC	2 cut(s)	236, 584
XapI	RAATTY	1 cut(s)	539
XceI	RCATGY	1 cut(s)	467
XspI	CTAG	2 cut(s)	299, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.