RLG00000034958

XS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014702
Physical Location & Seq
Forward (+)
57639715 .. 57645423
5709 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034958

Sequence Viewer

Length: 3504 bp
ATGAAGAAGCGGAGGTATTGTGACTTTGCGGGTCGGTCTTCGACTAACGACGGTGAGACGACGGAAGGAAACCGACGTTCGTACTCGGGTCGGGTTCCGGGTTCGGACCAAACCGAAGAGCCGGCCCGGAGAGAGTACTATGAAGACGACGGCGATACAGATAGGCAACCGTTGAAGCCGTCGCAGACACATTTGAGCGGCGGGTTGCGTCAATGCGAATCATTGTCGATGAAGTTTCAGTGGAACAATCTGCTGGCCCAGAATCCGAATCCGGGTTCTAACCCGAGAAAGATTCCGGGTCTGAACCGACCCGACTTGGATTATAGCGACCGGAGTGGTAGTTATGGCGGAAGGGGTTTGGGTGTGGACCAGAGAAAGCAGTATGGGCATTTTGATTGTCGTTGGTTCACGTCGCCATTGCCGAAATCCCATCTTGGTCTCCAAGAAAACGAGGAGGACCACCGCCCAATCCCATATGCGACTCTGGAAGACGAGCCCAAGTTTACTTCTGGAACTGGGTATTCATCAATGGGTTTGAAGGAGGGTTTTCACGGCGTTCGAGATGAATATGACAGAAGCAGAGCAATGGCTGAGTTGCCAATAGGTCACACGCCTAGACAGAATGAATTGAGTGAGGGTTTTCGCGGCGAATTCATTAGAAGCAGAGAAATGGGCCATGGTGGATATTCTCAAGGTCAAACAGCGAGACACGATGAGTTGGTGGACAATGCAGGTGGTGCATCAGAAGCTTTGAATGAGGGTTTTCGCGGCAGAAGCAGAGCAATGGCTGAGGGGCCTGTTGGCAGCCATGCTGGATATTCTCAAGGACTTACACCAAGACACTCACATGGGAGTTCACCAATTGCTTTGAATGAGGGTTTTCGTGGTTCGGATGAGTTTAACAAAAGCAGAGCAATGGCTGAGGGGCCTATTGGCCATGGTGGATATTCTCATGGTCAAACACCAAGAAAGAATGAGTTGGTGCACCCCAGGTGGGCTCAGCAGAGTCCGAAAGAGGAAATAGGTAGGGACTACAAGGTTCCTGGAATGAAAAGAAATGACAATGGTGACATGGATGCCTTGTTCCTTCTTGACTTGCTCTATAAAAAGATGGCTACTGTTGGAGAAGACTCAAGGCCTCCAAGTCATTTGACGCCAAGCGTTGTTGATTCTGTTGTGTACAGGGTTGGGGGTAGCAATGGATCTGTTGGAGCAGGCACTCATGAGAATTGCCAGTTGGACCAATATCATGATTATATGGAACCAACAAATGTTTTCCCCAACCATCAATCTACAAGTGAACCATCAATCCCCTGCTATGATGAAGTTTTGGATTCTTCTAATTCAAGAACAGAGGTGTGCTGGAACAATGAAACCCAGGGCTTCAGATTAGGAGTAGATGTTGGTCATGAAAGAGAGGTTGAGCCTTTATCATATGGAGGTAACCTAGAGAGACTGACTCTGCCTGATGAAGATCAAGGCTTGCTCGAGGCTTATGGTGGTTGCCAACAGAGGTTGGCAGCAGCCGAAAGCCTGGCATCCATGACCCCTCTGAGAAGGTGGGCATTGAGAAAAGTTGCCATGAAGGAGCAACAATCCGGCAATCACTCAAAGTCTAAGTTCTTCCCTGATTTGAACCCCTCTTGTAATGTACAGAACTCAAGCTATGAAGTTGACATGCAGTTGACTACTACTGAGGATATGCAGCAGCAATATGCTAATGAAGATATTCAACAATATGCTGCTACCTGTGGAGAGGATCATTGGAACATGGAGCAAAATGTGATCTGTGGAGATGGTCAATGTTCCATTGACCAAGGTGTGATCCGTGCAGTGGATCAAAGGAACACCGAACAAGGTTCCATTAACCAAGGTGTGACCTGTGGAGTGGATCAAAGGAACATTGCACAAGGTGTGACCTCTGGAGAGGATCAATGTAACATCCATCGAGGTGTGATCTCCAGAGGGGATCAATGGAACAATGATCAAGGTGTGACAACCTATGGAGAGCAACAATGGCGTATGGACAATGGGGGGGGACAATGGAACAATGATCAAGGCGTCACAACCTCTGGAGAGCAACAGTGGCGTATGAACTATGGAGAGGACCAATGGAATGCTGAGCATATCAACAACCTGAATTCTGACAGTTTGTTACCGAATTCTGAACTGCCAGCATCTACGCAAGAGCATTATGGCGAACAATCCAAATCTGCTAGGATACATGTAAAGGAGCGTTTGGGACCTCCCAAATTATCAACTGGAAGCATAAAAACGCATTTGAGACCACCTATGAAATCACCTGGCAGTGTGAAGATGCGTTTGGGGCCTTCTGCAAATGATCCTAATATCAACATTTTAGGTTTCAAGCCTCGAGAACAATACAAATCTCGAATAAGAAAAACAGATGACGTCAGTGGAAGTATTCATCCTGAAGGGGATGGAATTCCGAAAGCTAAGACCGATGCTGCCGCTGGGAGGATTCATCCTCAGGGGAGTGCTCTTCCACAAGTCAAGACGGATGGTTTTATTGGAAGCATTCATCCTCAAGGGGGTGGTCATTCAATAGTTAAGACAGATGCTACTGGAAGCATTAATCCTCAAGGGAATGGTATTCCAAATATTAAGAAAGGTGATTTTAATGGAAGCATTCGTCCTCAAGGGGGTAGTCTTTCAAAAGTTGATGTGAGAGCTGCAAAGAAAGAACCGCCTGAAGACTCTAAGGAGTTTAAGCAGCTGGTAGATGATGCCTTCATTAAGTTCATTAACATTTTGATTGAGAACCCACCTCAAAGAAGGAAAATCATGGAAGGAAAAGGAGGAAAGTGTTGCGTGTGTGCCAGCAATTCCAAAGAGTTTGTAGAAACAGCAACCTTAGCAAGGCATGCCTTCTTGTCGCCAAAGGTTGGTTTCAAAGCAGAACACCTGGGCTTTCATAAAGCACTTTGTGTGCTCTTGGGATGGGACAGTACGGCAGTCTCAAACACTAGGTGGGTTCAGCGGAATTTGCCAGATGCAGAAACCTTGGCTCTGAAGGAGGACCTAGTTATCTGGCCTCCTGTTGTTGTCATACACAATAGTTCTGTAGCAAATAAAAATCCTGAAGATGAAAGGCTGACGGTAAATGTTGAAGTTCTAGAGGCTATTCTTACAAGTATAGGATTTGTTGGGAGGAAGGCCAATATGTACTGTGGGAAACCTGCGGATGGGAGTGTCATGGTGGTGAAGTTTCAGCCTACATTTTCTGGTTTGCAAGAAGCAGAAAGGCTTCACAAGCTATTTGCTGATAACAAACATGGGAAGGCTGAGTGGCGGTATATCAATTCTGTTGGCCTCAGCAACAGCAGCAACGGAAAGCAAGACTTAGAGGCTGATGAGGCAAATTGTCTATATGGTTATTTGGGAAATGCAGACGATTGGGATGAACTTGACTTGGGAACCAAGAAGCACTTCGGGGTGAAGAGCAAGAAACAAATCAAGGCTATTGCGAATGCTTCTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XS

Protein Analysis

1168

Amino Acids

128.73

Weight (kDa)

6.04

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XS PF03468 1013 - 1141 2.6e-19 XS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014702)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29670
malus_domestica MD03G1136700.v1.1
prunus_persica Prupe.6G121100_v2.0.a1 Prupe.6G121100_v2.0.a1
pyrus_communis pycom03g09250
rosa_chinensis RchiOBHm_Chr5g0055031
rosa_laevigata RLG00000034958
rosa_multiflora Rmu_co8511567.1_g000001 Rmu_sc0000925.1_g000013
rosa_roxburghii Rroxscaffold_1G00025460
rosa_rugosa Rorug05G0290200 Rorug05G0290300
rosa_samantha Rh5AG360200 Rh5BG371200 Rh5CG393500 Rh5DG385000
rosa_wichuraiana Rw5G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 722
AatII GACGTC 1 cut(s) 2415
Acc36I ACCTGC 2 cut(s) 722, 3208
AccB7I CCANNNNNTGG 1 cut(s) 2906
AccBSI CCGCTC 1 cut(s) 198
AccII CGCG 2 cut(s) 645, 768
AclWI GGATC 8 cut(s) 1210, 1767, 1819, 1845, 1899, 1938, 1977, 2336
AcoI YGGCCR 1 cut(s) 934
AcsI RAATTY 5 cut(s) 650, 2140, 2161, 2445, 3004
AcuI CTGAAG 5 cut(s) 1369, 2454, 2733, 3053, 3123
AcyI GRCGYC 3 cut(s) 1154, 2061, 2412
AdeI CACNNNGTG 3 cut(s) 1913, 2948, 2991
AfaI GTAC 6 cut(s) 83, 137, 1181, 1653, 2971, 3188
AfiI CCNNNNNNNGG 9 cut(s) 272, 994, 1834, 2478, 2552, 2663, 2880, 2906, 3206
AflIII ACRYGT 1 cut(s) 2224
AjiI CACGTC 1 cut(s) 411
AjnI CCWGG 6 cut(s) 989, 1042, 1377, 1533, 2302, 2925
AjuI GAANNNNNNNTTGG 6 cut(s) 1220, 1252, 2306, 2338, 3434, 3466
AloI GAACNNNNNNTCC 4 cut(s) 1067, 1099, 1293, 1325
AluBI AGCT 6 cut(s) 749, 1665, 2456, 2693, 2737, 3277
AluI AGCT 6 cut(s) 749, 1665, 2456, 2693, 2737, 3277
Alw21I GWGCWC 3 cut(s) 987, 2503, 2955
Alw26I GTCTC 6 cut(s) 50, 443, 700, 1447, 2278, 2983
Alw44I GTGCAC 1 cut(s) 983
AlwI GGATC 8 cut(s) 1210, 1767, 1819, 1845, 1899, 1938, 1977, 2336
Ama87I CYCGRG 4 cut(s) 85, 283, 1487, 2373
ApaLI GTGCAC 1 cut(s) 983
ApoI RAATTY 5 cut(s) 650, 2140, 2161, 2445, 3004
AseI ATTAAT 1 cut(s) 2595
Asp700I GAANNNNTTC 3 cut(s) 1728, 3267, 3449
AsuC2I CCSGG 4 cut(s) 99, 127, 273, 297
AsuHPI GGTGA 7 cut(s) 65, 849, 1079, 2292, 2645, 3235, 3469
AvaI CYCGRG 4 cut(s) 85, 283, 1487, 2373
AvaII GGWCC 7 cut(s) 106, 367, 457, 1240, 2107, 2243, 3040
AxyI CCTNAGG 1 cut(s) 2490
BaeGI GKGCMC 1 cut(s) 987
BalI TGGCCA 1 cut(s) 936
BanII GRGCYC 2 cut(s) 498, 1000
BbsI GAAGAC 5 cut(s) 30, 150, 495, 1134, 2721
Bbv12I GWGCWC 3 cut(s) 987, 2503, 2955
BbvCI CCTCAGC 3 cut(s) 789, 921, 3335
BceAI ACGGC 4 cut(s) 163, 166, 568, 2988
BciT130I CCWGG 6 cut(s) 991, 1044, 1379, 1535, 2304, 2927
BciVI GTATCC 1 cut(s) 2214
BclI TGATCA 2 cut(s) 1984, 2053
BcnI CCSGG 4 cut(s) 99, 127, 273, 297
BcoDI GTCTC 6 cut(s) 50, 443, 700, 1447, 2278, 2983
BfaI CTAG 6 cut(s) 615, 1448, 2217, 2988, 3044, 3137
BfmI CTRYAG 1 cut(s) 3084
BfuAI ACCTGC 2 cut(s) 722, 3208
BfuI GTATCC 1 cut(s) 2214
BlpI GCTNAGC 2 cut(s) 999, 2121
BmcAI AGTACT 1 cut(s) 137
Bme18I GGWCC 7 cut(s) 106, 367, 457, 1240, 2107, 2243, 3040
BmeT110I CYCGRG 4 cut(s) 85, 283, 1487, 2373
BmgBI CACGTC 1 cut(s) 411
BmiI GGNNCC 9 cut(s) 96, 795, 927, 1041, 1263, 1861, 2244, 2328, 3439
BmrI ACTGGG 1 cut(s) 525
BmsI GCATC 9 cut(s) 749, 1066, 1547, 2186, 2307, 2455, 2569, 2737, 3004
BmuI ACTGGG 1 cut(s) 525
BpiI GAAGAC 5 cut(s) 30, 150, 495, 1134, 2721
BplI GAGNNNNNCTC 2 cut(s) 1444, 1476
BpmI CTGGAG 3 cut(s) 1944, 1945, 2094
Bpu10I CCTNAGC 4 cut(s) 789, 921, 2875, 3335
Bpu1102I GCTNAGC 2 cut(s) 999, 2121
BpuEI CTTGAG 7 cut(s) 675, 807, 1117, 1645, 2532, 2586, 2643
BpuMI CCSGG 4 cut(s) 99, 127, 273, 297
BsaBI GATNNNNATC 1 cut(s) 1473
BsaHI GRCGYC 3 cut(s) 1154, 2061, 2412
BsaI GGTCTC 2 cut(s) 443, 2278
BsaJI CCNNGG 9 cut(s) 676, 937, 989, 1377, 1378, 1816, 1870, 2926, 3024
BsaWI WCCGGW 1 cut(s) 330
BsaXI ACNNNNNCTCC 5 cut(s) 34, 325, 355, 1386, 1416
Bsc4I CCNNNNNNNGG 9 cut(s) 272, 994, 1834, 2478, 2552, 2663, 2880, 2906, 3206
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 4 cut(s) 520, 1234, 2266, 2590
Bse21I CCTNAGG 1 cut(s) 2490
Bse3DI GCAATG 6 cut(s) 416, 591, 789, 921, 1204, 1902
Bse8I GATNNNNATC 1 cut(s) 1473
BseBI CCWGG 6 cut(s) 991, 1044, 1379, 1535, 2304, 2927
BseDI CCNNGG 9 cut(s) 676, 937, 989, 1377, 1378, 1816, 1870, 2926, 3024
BseJI GATNNNNATC 1 cut(s) 1473
BseLI CCNNNNNNNGG 9 cut(s) 272, 994, 1834, 2478, 2552, 2663, 2880, 2906, 3206
BseMI GCAATG 6 cut(s) 416, 591, 789, 921, 1204, 1902
BseNI ACTGG 4 cut(s) 520, 1234, 2266, 2590
BseRI GAGGAG 1 cut(s) 467
BseSI GKGCMC 1 cut(s) 987
BseYI CCCAGC 1 cut(s) 2474
BsgI GTGCAG 1 cut(s) 1851
Bsh1236I CGCG 2 cut(s) 645, 768
Bsh1285I CGRYCG 1 cut(s) 331
BsiEI CGRYCG 1 cut(s) 331
BsiHKAI GWGCWC 3 cut(s) 987, 2503, 2955
BsiHKCI CYCGRG 4 cut(s) 85, 283, 1487, 2373
BsiSI CCGG 7 cut(s) 98, 122, 127, 272, 296, 331, 1599
BslFI GGGAC 4 cut(s) 1043, 2052, 2256, 2978
BslI CCNNNNNNNGG 9 cut(s) 272, 994, 1834, 2478, 2552, 2663, 2880, 2906, 3206
BsmAI GTCTC 6 cut(s) 50, 443, 700, 1447, 2278, 2983
BsmBI CGTCTC 1 cut(s) 50
BsmFI GGGAC 4 cut(s) 1043, 2052, 2256, 2978
BsmI GAATGC 4 cut(s) 2122, 2538, 2649, 3496
Bso31I GGTCTC 2 cut(s) 443, 2278
BsoBI CYCGRG 4 cut(s) 85, 283, 1487, 2373
Bsp1286I GDGCHC 5 cut(s) 498, 987, 1000, 2503, 2955
Bsp1407I TGTACA 2 cut(s) 1179, 1651
Bsp1720I GCTNAGC 2 cut(s) 999, 2121
Bsp19I CCATGG 2 cut(s) 676, 937
BspFNI CGCG 2 cut(s) 645, 768
BspHI TCATGA 3 cut(s) 1222, 1249, 1408
BspLI GGNNCC 9 cut(s) 96, 795, 927, 1041, 1263, 1861, 2244, 2328, 3439
BspMI ACCTGC 2 cut(s) 722, 3208
BspPI GGATC 8 cut(s) 1210, 1767, 1819, 1845, 1899, 1938, 1977, 2336
BspQI GCTCTTC 3 cut(s) 111, 2508, 3455
BspTNI GGTCTC 2 cut(s) 443, 2278
BsrBI CCGCTC 1 cut(s) 198
BsrDI GCAATG 6 cut(s) 416, 591, 789, 921, 1204, 1902
BsrFI RCCGGY 1 cut(s) 121
BsrGI TGTACA 2 cut(s) 1179, 1651
BsrI ACTGG 4 cut(s) 520, 1234, 2266, 2590
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 9 cut(s) 676, 937, 989, 1377, 1378, 1816, 1870, 2926, 3024
BssNI GRCGYC 3 cut(s) 1154, 2061, 2412
BssT1I CCWWGG 5 cut(s) 676, 937, 1816, 1870, 3024
Bst2UI CCWGG 6 cut(s) 991, 1044, 1379, 1535, 2304, 2927
Bst4CI ACNGT 8 cut(s) 53, 171, 1120, 2085, 2150, 2969, 3121, 3191
Bst6I CTCTTC 3 cut(s) 111, 2508, 3455
BstACI GRCGYC 3 cut(s) 1154, 2061, 2412
BstAPI GCANNNNNTGC 2 cut(s) 737, 2885
BstAUI TGTACA 2 cut(s) 1179, 1651
BstC8I GCNNGC 7 cut(s) 123, 255, 1216, 1484, 2175, 2842, 2886
BstDSI CCRYGG 2 cut(s) 676, 937
BstEII GGTNACC 1 cut(s) 1442
BstENI CCTNNNNNAGG 1 cut(s) 2878
BstFNI CGCG 2 cut(s) 645, 768
BstMAI GTCTC 6 cut(s) 50, 443, 700, 1447, 2278, 2983
BstMCI CGRYCG 1 cut(s) 331
BstNI CCWGG 6 cut(s) 991, 1044, 1379, 1535, 2304, 2927
BstNSI RCATGY 3 cut(s) 1681, 2228, 2888
BstPI GGTNACC 1 cut(s) 1442
BstSFI CTRYAG 1 cut(s) 3084
BstSLI GKGCMC 1 cut(s) 987
BstUI CGCG 2 cut(s) 645, 768
BstV2I GAAGAC 5 cut(s) 30, 150, 495, 1134, 2721
BstX2I RGATCY 1 cut(s) 1202
BstYI RGATCY 1 cut(s) 1202
Bsu36I CCTNAGG 1 cut(s) 2490
BsuI GTATCC 1 cut(s) 2214
BtgI CCRYGG 2 cut(s) 676, 937
BtrI CACGTC 1 cut(s) 411
BtsI GCAGTG 2 cut(s) 1839, 2314
BtsIMutI CAGTG 5 cut(s) 245, 1839, 2090, 2314, 2422
BveI ACCTGC 2 cut(s) 722, 3208
Cac8I GCNNGC 7 cut(s) 123, 255, 1216, 1484, 2175, 2842, 2886
CciI TCATGA 3 cut(s) 1222, 1249, 1408
Cfr10I RCCGGY 1 cut(s) 121
CseI GACGC 3 cut(s) 197, 1162, 2050
Csp6I GTAC 6 cut(s) 82, 136, 1180, 1652, 2970, 3187
CspCI CAANNNNNGTGG 2 cut(s) 715, 750
CviQI GTAC 6 cut(s) 82, 136, 1180, 1652, 2970, 3187
DraIII CACNNNGTG 3 cut(s) 1913, 2948, 2991
EaeI YGGCCR 1 cut(s) 934
Eam1104I CTCTTC 3 cut(s) 111, 2508, 3455
EarI CTCTTC 3 cut(s) 111, 2508, 3455
EciI GGCGGA 1 cut(s) 363
Eco130I CCWWGG 5 cut(s) 676, 937, 1816, 1870, 3024
Eco147I AGGCCT 1 cut(s) 1138
Eco24I GRGCYC 2 cut(s) 498, 1000
Eco31I GGTCTC 2 cut(s) 443, 2278
Eco47I GGWCC 7 cut(s) 106, 367, 457, 1240, 2107, 2243, 3040
Eco57I CTGAAG 5 cut(s) 1369, 2454, 2733, 3053, 3123
Eco81I CCTNAGG 1 cut(s) 2490
Eco88I CYCGRG 4 cut(s) 85, 283, 1487, 2373
Eco91I GGTNACC 1 cut(s) 1442
EcoNI CCTNNNNNAGG 1 cut(s) 2878
EcoO109I RGGNCCY 5 cut(s) 794, 926, 2243, 2327, 3040
EcoO65I GGTNACC 1 cut(s) 1442
EcoRI GAATTC 4 cut(s) 650, 2140, 2161, 2445
EcoRII CCWGG 6 cut(s) 989, 1042, 1377, 1533, 2302, 2925
EcoT14I CCWWGG 5 cut(s) 676, 937, 1816, 1870, 3024
EcoT38I GRGCYC 2 cut(s) 498, 1000
ErhI CCWWGG 5 cut(s) 676, 937, 1816, 1870, 3024
Esp3I CGTCTC 1 cut(s) 50
FalI AAGNNNNNCTT 4 cut(s) 3347, 3379, 3434, 3466
FaqI GGGAC 4 cut(s) 1043, 2052, 2256, 2978
FauI CCCGC 2 cut(s) 22, 194
FauNDI CATATG 2 cut(s) 475, 1435
FbaI TGATCA 2 cut(s) 1984, 2053
FriOI GRGCYC 2 cut(s) 498, 1000
FspBI CTAG 6 cut(s) 615, 1448, 2217, 2988, 3044, 3137
GsaI CCCAGC 1 cut(s) 2478
GsuI CTGGAG 3 cut(s) 1944, 1945, 2094
HapII CCGG 7 cut(s) 98, 122, 127, 272, 296, 331, 1599
HgaI GACGC 3 cut(s) 197, 1162, 2050
Hin1I GRCGYC 3 cut(s) 1154, 2061, 2412
HincII GTYRAC 2 cut(s) 1675, 1686
HindII GTYRAC 2 cut(s) 1675, 1686
HindIII AAGCTT 1 cut(s) 747
HpaII CCGG 7 cut(s) 98, 122, 127, 272, 296, 331, 1599
HphI GGTGA 7 cut(s) 65, 849, 1079, 2292, 2645, 3235, 3469
Hpy99I CGWCG 6 cut(s) 53, 64, 78, 152, 184, 415
HpyCH4III ACNGT 8 cut(s) 53, 171, 1120, 2085, 2150, 2969, 3121, 3191
HpyCH4IV ACGT 3 cut(s) 76, 410, 2412
HpySE526I ACGT 3 cut(s) 76, 410, 2412
Hsp92I GRCGYC 3 cut(s) 1154, 2061, 2412
KroI GCCGGC 1 cut(s) 121
KroNI GCCGGC 1 cut(s) 123
Ksp22I TGATCA 2 cut(s) 1984, 2053
LguI GCTCTTC 3 cut(s) 111, 2508, 3455
LmnI GCTCC 4 cut(s) 1211, 1588, 1774, 2233
LweI GCATC 9 cut(s) 749, 1066, 1547, 2186, 2307, 2455, 2569, 2737, 3004
MaeI CTAG 6 cut(s) 615, 1448, 2217, 2988, 3044, 3137
MaeII ACGT 3 cut(s) 76, 410, 2412
MbiI CCGCTC 1 cut(s) 198
MfeI CAATTG 1 cut(s) 861
MflI RGATCY 1 cut(s) 1202
MhlI GDGCHC 5 cut(s) 498, 987, 1000, 2503, 2955
MlsI TGGCCA 1 cut(s) 936
MluNI TGGCCA 1 cut(s) 936
MlyI GAGTC 5 cut(s) 475, 1015, 1124, 1453, 2711
MmeI TCCRAC 3 cut(s) 1102, 1189, 1218
Mox20I TGGCCA 1 cut(s) 936
MroNI GCCGGC 1 cut(s) 121
MroXI GAANNNNTTC 3 cut(s) 1728, 3267, 3449
MscI TGGCCA 1 cut(s) 936
MseI TTAA 9 cut(s) 900, 1866, 2571, 2595, 2625, 2640, 2730, 2757, 2766
MslI CAYNNNNRTG 3 cut(s) 846, 1950, 3221
Msp20I TGGCCA 1 cut(s) 936
MspA1I CMGCKG 3 cut(s) 2474, 2737, 3001
MspI CCGG 7 cut(s) 98, 122, 127, 272, 296, 331, 1599
MunI CAATTG 1 cut(s) 861
Mva1269I GAATGC 4 cut(s) 2122, 2538, 2649, 3496
MvaI CCWGG 6 cut(s) 991, 1044, 1379, 1535, 2304, 2927
MvnI CGCG 2 cut(s) 645, 768
NaeI GCCGGC 1 cut(s) 123
NciI CCSGG 4 cut(s) 99, 127, 273, 297
NcoI CCATGG 2 cut(s) 676, 937
NdeI CATATG 2 cut(s) 475, 1435
NgoMIV GCCGGC 1 cut(s) 121
NlaIV GGNNCC 9 cut(s) 96, 795, 927, 1041, 1263, 1861, 2244, 2328, 3439
NmuCI GTSAC 7 cut(s) 20, 605, 1067, 1876, 1915, 1993, 2062
NspI RCATGY 3 cut(s) 1681, 2228, 2888
PaeI GCATGC 1 cut(s) 2888
PaeR7I CTCGAG 2 cut(s) 1487, 2373
PagI TCATGA 3 cut(s) 1222, 1249, 1408
PaqCI CACCTGC 1 cut(s) 722
PasI CCCWGGG 1 cut(s) 1378
PceI AGGCCT 1 cut(s) 1138
PciI ACATGT 1 cut(s) 2224
PciSI GCTCTTC 3 cut(s) 111, 2508, 3455
PcsI WCGNNNNNNNCGW 1 cut(s) 419
PctI GAATGC 4 cut(s) 2122, 2538, 2649, 3496
PdiI GCCGGC 1 cut(s) 123
PdmI GAANNNNTTC 3 cut(s) 1728, 3267, 3449
PfeI GAWTC 7 cut(s) 218, 262, 268, 292, 1169, 1334, 2482
PflMI CCANNNNNTGG 1 cut(s) 2906
PfoI TCCNGGA 1 cut(s) 1042
PleI GAGTC 5 cut(s) 475, 1014, 1124, 1453, 2711
PpsI GAGTC 5 cut(s) 475, 1014, 1124, 1453, 2711
PpuMI RGGWCCY 2 cut(s) 2243, 3040
PscI ACATGT 1 cut(s) 2224
PshBI ATTAAT 1 cut(s) 2595
Psp5II RGGWCCY 2 cut(s) 2243, 3040
Psp6I CCWGG 6 cut(s) 989, 1042, 1377, 1533, 2302, 2925
PspEI GGTNACC 1 cut(s) 1442
PspFI CCCAGC 1 cut(s) 2474
PspGI CCWGG 6 cut(s) 989, 1042, 1377, 1533, 2302, 2925
PspN4I GGNNCC 9 cut(s) 96, 795, 927, 1041, 1263, 1861, 2244, 2328, 3439
PspPPI RGGWCCY 2 cut(s) 2243, 3040
PspXI VCTCGAGB 1 cut(s) 1487
PsuI RGATCY 1 cut(s) 1202
PvuII CAGCTG 1 cut(s) 2737
RsaI GTAC 6 cut(s) 83, 137, 1181, 1653, 2971, 3188
RsaNI GTAC 6 cut(s) 82, 136, 1180, 1652, 2970, 3187
RseI CAYNNNNRTG 3 cut(s) 846, 1950, 3221
SapI GCTCTTC 3 cut(s) 111, 2508, 3455
SaqAI TTAA 9 cut(s) 900, 1866, 2571, 2595, 2625, 2640, 2730, 2757, 2766
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 5 cut(s) 475, 1015, 1124, 1453, 2711
SduI GDGCHC 5 cut(s) 498, 987, 1000, 2503, 2955
SfaNI GCATC 9 cut(s) 749, 1066, 1547, 2186, 2307, 2455, 2569, 2737, 3004
SfcI CTRYAG 1 cut(s) 3084
Sfr274I CTCGAG 2 cut(s) 1487, 2373
SinI GGWCC 7 cut(s) 106, 367, 457, 1240, 2107, 2243, 3040
SlaI CTCGAG 2 cut(s) 1487, 2373
SmiMI CAYNNNNRTG 3 cut(s) 846, 1950, 3221
SmlI CTYRAG 9 cut(s) 690, 822, 1132, 1487, 1660, 2373, 2547, 2601, 2658
SmoI CTYRAG 9 cut(s) 690, 822, 1132, 1487, 1660, 2373, 2547, 2601, 2658
SphI GCATGC 1 cut(s) 2888
SseBI AGGCCT 1 cut(s) 1138
SspI AATATT 1 cut(s) 2623
SspMI CTAG 6 cut(s) 615, 1448, 2217, 2988, 3044, 3137
StuI AGGCCT 1 cut(s) 1138
StyI CCWWGG 5 cut(s) 676, 937, 1816, 1870, 3024
TaaI ACNGT 8 cut(s) 53, 171, 1120, 2085, 2150, 2969, 3121, 3191
TaiI ACGT 3 cut(s) 79, 413, 2415
TaqI TCGA 7 cut(s) 41, 227, 559, 1488, 1948, 2374, 2392
TaqII GACCGA 2 cut(s) 24, 2477
TatI WGTACW 4 cut(s) 135, 1179, 1651, 3186
TauI GCSGC 4 cut(s) 201, 648, 771, 2474
TfiI GAWTC 7 cut(s) 218, 262, 268, 292, 1169, 1334, 2482
Tru1I TTAA 9 cut(s) 900, 1866, 2571, 2595, 2625, 2640, 2730, 2757, 2766
Tru9I TTAA 9 cut(s) 900, 1866, 2571, 2595, 2625, 2640, 2730, 2757, 2766
TscAI CASTG 5 cut(s) 245, 1839, 2090, 2314, 2422
TseFI GTSAC 7 cut(s) 20, 605, 1067, 1876, 1915, 1993, 2062
Tsp45I GTSAC 7 cut(s) 20, 605, 1067, 1876, 1915, 1993, 2062
TspGWI ACGGA 4 cut(s) 77, 1817, 2534, 3366
TspRI CASTG 5 cut(s) 245, 1839, 2090, 2314, 2422
Van91I CCANNNNNTGG 1 cut(s) 2906
VneI GTGCAC 1 cut(s) 983
VpaK11BI GGWCC 7 cut(s) 106, 367, 457, 1240, 2107, 2243, 3040
VspI ATTAAT 1 cut(s) 2595
XagI CCTNNNNNAGG 1 cut(s) 2878
XapI RAATTY 5 cut(s) 650, 2140, 2161, 2445, 3004
XbaI TCTAGA 1 cut(s) 3136
XceI RCATGY 3 cut(s) 1681, 2228, 2888
XhoI CTCGAG 2 cut(s) 1487, 2373
XmnI GAANNNNTTC 3 cut(s) 1728, 3267, 3449
XspI CTAG 6 cut(s) 615, 1448, 2217, 2988, 3044, 3137
ZraI GACGTC 1 cut(s) 2413
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.