Rmu_sc0000925.1_g000013

XS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000925.1
OG0014702
Physical Location & Seq
Reverse (-)
67997 .. 69177
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000925.1_g000013.1.cds

Sequence Viewer

Length: 693 bp
atgataactcaatcttttttctgttgtatcagcaattccaaagagtttgtagaaacggcaaccttagcaaggcatgccttcttatcgccaaaggttggtttcaaagcagaacacctgggctttcataaagcactttgtgtgctcttgggatgggacaatacagcagtctcaaacactaggtgggttcagcggaacttgccagatgcagaatccttggctctgaaggaggacctagttatctggcctcctgttgttgtcatacacaatagttctgtagcagataaaaatcctgaagatgaaaggctgacggtaaatgttgaagttctagaggctattcttacaagtataggatttgttgggaggaagaccaatatgtactgtgggaaacctgccgatgggagtgtcatggtggtgaagtttcagcctacattttctggtatgcaagaagcagaaaggcttcacaagctgtttgctgataacaaacatgggaaggctgagtggcggtatatcaattctgttggcctcagcaacagcagcaatggaaaacaagacttagaggctgatgaggcgaattgtctatatggttatttgggaaatgcagacgattgggatgaagttgacttgggaaccaagaagcacttcggggtgaagagcaagaaacaaatcaaggctattgcaaatgcttctctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XS

Protein Analysis

230

Amino Acids

25.49

Weight (kDa)

6.38

Isoelectric Point (pI)

23.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014702)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29670
malus_domestica MD03G1136700.v1.1
prunus_persica Prupe.6G121100_v2.0.a1 Prupe.6G121100_v2.0.a1
pyrus_communis pycom03g09250
rosa_chinensis RchiOBHm_Chr5g0055031
rosa_laevigata RLG00000034958
rosa_multiflora Rmu_co8511567.1_g000001 Rmu_sc0000925.1_g000013
rosa_roxburghii Rroxscaffold_1G00025460
rosa_rugosa Rorug05G0290200 Rorug05G0290300
rosa_samantha Rh5AG360200 Rh5BG371200 Rh5CG393500 Rh5DG385000
rosa_wichuraiana Rw5G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 397
AccB7I CCANNNNNTGG 1 cut(s) 95
AciI CCGC 2 cut(s) 190, 502
AcuI CTGAAG 2 cut(s) 242, 312
AdeI CACNNNGTG 2 cut(s) 137, 180
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 3 cut(s) 69, 95, 395
AgsI TTSAA 2 cut(s) 103, 320
AjnI CCWGG 1 cut(s) 114
AjuI GAANNNNNNNTTGG 2 cut(s) 623, 655
AluBI AGCT 1 cut(s) 466
AluI AGCT 1 cut(s) 466
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 172
AoxI GGCC 2 cut(s) 242, 520
ApeKI GCWGC 1 cut(s) 534
Asp700I GAANNNNTTC 2 cut(s) 456, 638
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 424, 658
AvaII GGWCC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 371
Bbv12I GWGCWC 1 cut(s) 144
BbvCI CCTCAGC 1 cut(s) 524
BbvI GCAGC 1 cut(s) 546
BccI CCATC 2 cut(s) 144, 389
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 3 cut(s) 177, 233, 326
BfmI CTRYAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 397
BisI GCNGC 1 cut(s) 535
BlsI GCNGC 1 cut(s) 536
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 628
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 371
Bpu10I CCTNAGC 2 cut(s) 64, 524
BsaBI GATNNNNATC 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 115, 213
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 95, 395
Bse3DI GCAATG 1 cut(s) 544
Bse8I GATNNNNATC 1 cut(s) 285
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 115, 213
BseGI GGATG 2 cut(s) 155, 616
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 3 cut(s) 69, 95, 395
BseMI GCAATG 1 cut(s) 544
BseMII CTCAG 2 cut(s) 486, 538
BseXI GCAGC 1 cut(s) 546
BshFI GGCC 2 cut(s) 244, 522
BsiHKAI GWGCWC 1 cut(s) 144
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 3 cut(s) 69, 95, 395
BsmAI GTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 2 cut(s) 244, 522
Bsp1286I GDGCHC 1 cut(s) 144
BspACI CCGC 2 cut(s) 190, 502
BspANI GGCC 2 cut(s) 244, 522
BspCNI CTCAG 2 cut(s) 487, 537
BspLI GGNNCC 1 cut(s) 628
BspMI ACCTGC 1 cut(s) 397
BspQI GCTCTTC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 544
BssECI CCNNGG 2 cut(s) 115, 213
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 310, 380
Bst6I CTCTTC 1 cut(s) 644
BstAPI GCANNNNNTGC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 4 cut(s) 64, 495, 524, 553
BstENI CCTNNNNNAGG 1 cut(s) 67
BstF5I GGATG 2 cut(s) 155, 616
BstMAI GTCTC 1 cut(s) 172
BstMWI GCNNNNNNNGC 6 cut(s) 65, 74, 196, 463, 534, 566
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 546
BstV2I GAAGAC 1 cut(s) 371
BsuRI GGCC 2 cut(s) 244, 522
BtsCI GGATG 2 cut(s) 155, 616
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 376
CviAII CATG 3 cut(s) 74, 406, 485
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 4 cut(s) 64, 495, 524, 553
DraIII CACNNNGTG 2 cut(s) 137, 180
Eam1104I CTCTTC 1 cut(s) 644
EarI CTCTTC 1 cut(s) 644
Eco130I CCWWGG 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 229
Eco57I CTGAAG 2 cut(s) 242, 312
EcoNI CCTNNNNNAGG 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 3 cut(s) 77, 409, 488
FalI AAGNNNNNCTT 2 cut(s) 623, 655
FaqI GGGAC 1 cut(s) 167
FatI CATG 3 cut(s) 73, 405, 484
Fnu4HI GCNGC 1 cut(s) 535
FokI GGATG 2 cut(s) 162, 623
Fsp4HI GCNGC 1 cut(s) 535
FspBI CTAG 3 cut(s) 177, 233, 326
GluI GCNGC 1 cut(s) 535
HaeIII GGCC 2 cut(s) 244, 522
Hin1II CATG 3 cut(s) 77, 409, 488
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HinfI GANTC 1 cut(s) 209
HphI GGTGA 2 cut(s) 424, 658
Hpy166II GTNNAC 1 cut(s) 619
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 2 cut(s) 290, 326
Hpy8I GTNNAC 1 cut(s) 619
HpyAV CCTTC 3 cut(s) 88, 217, 484
HpyCH4III ACNGT 2 cut(s) 310, 380
HpyCH4V TGCA 4 cut(s) 206, 442, 599, 677
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 74, 196, 463, 534, 566
HpyF3I CTNAG 4 cut(s) 64, 495, 524, 553
Hsp92II CATG 3 cut(s) 77, 409, 488
LguI GCTCTTC 1 cut(s) 644
LpnPI CCDG 8 cut(s) 101, 128, 213, 226, 261, 303, 402, 420
Lsp1109I GCAGC 1 cut(s) 546
LweI GCATC 1 cut(s) 193
MaeI CTAG 3 cut(s) 177, 233, 326
MboII GAAGA 3 cut(s) 305, 376, 661
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 3 cut(s) 34, 511, 571
MnlI CCTC 7 cut(s) 220, 255, 322, 354, 533, 550, 559
MroXI GAANNNNTTC 2 cut(s) 456, 638
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 6 cut(s) 65, 74, 196, 463, 534, 566
NlaIII CATG 3 cut(s) 77, 409, 488
NlaIV GGNNCC 1 cut(s) 628
NspI RCATGY 1 cut(s) 77
PaeI GCATGC 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 644
PdmI GAANNNNTTC 2 cut(s) 456, 638
PfeI GAWTC 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 95
PkrI GCNGC 1 cut(s) 536
PpuMI RGGWCCY 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 628
PspPI GGNCC 1 cut(s) 229
PspPPI RGGWCCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
RseI CAYNNNNRTG 1 cut(s) 410
SapI GCTCTTC 1 cut(s) 644
SatI GCNGC 1 cut(s) 535
Sau96I GGNCC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 144
SetI ASST 7 cut(s) 65, 96, 117, 182, 234, 391, 468
SfaNI GCATC 1 cut(s) 193
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 410
SphI GCATGC 1 cut(s) 77
Sse9I AATT 3 cut(s) 34, 511, 571
SsiI CCGC 2 cut(s) 190, 502
SspMI CTAG 3 cut(s) 177, 233, 326
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 310, 380
TasI AATT 3 cut(s) 34, 511, 571
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 1 cut(s) 209
TseI GCWGC 1 cut(s) 534
TspDTI ATGAA 3 cut(s) 113, 312, 627
Van91I CCANNNNNTGG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 229
XagI CCTNNNNNAGG 1 cut(s) 67
XbaI TCTAGA 1 cut(s) 325
XceI RCATGY 1 cut(s) 77
XmnI GAANNNNTTC 2 cut(s) 456, 638
XspI CTAG 3 cut(s) 177, 233, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.