Rh5CG393500

XS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014702
Physical Location & Seq
Forward (+)
51829433 .. 51834935
5503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG393500.1

Sequence Viewer

Length: 2997 bp
ATGGAGGTTTTTCGCGGCGTTCGAGATGAATATGACAGAAGCAGAGCAATGGCTGAGTTGCCAATAGGTCACACGCCTAGACGGAATGAGTTGGTGGACTATGGAGGTTCATCAATTGCTCTGAGTGAGGGTTTTCGCGGCGAGTTCAACAGAAGCAGAGAAATGGGCCATGGTGGATATTCTCAAGGTCAACCAGCGAGACACGATGAGTTGGTAGACAATGCAGGTGGTGCATCAGAAGCTTTGAATGAGGGTTTTCGCGGCAGAAGCAGAGCAATGGCTGAGGGGCCTGTTGGCAGCCATGCTGGATATTCTCAAGGACTTACACCAAGACACTCACATGGGAGTTCACCAATTGCTTTGAATGAGGGTTTTCGCGGTTCGGATGAGTTTAACAAAAGCAGAGCAATGGCTGAGGGGCCTATTGGCCATGGTGGATATTCTCATGGTCAAACACCAAGAAAGAATGAGTTGGTGCACCCCAGGTGGGCTCAGCAGAGTCCGAAAGAGGAAATGGGTAGGGACTACAAGGTTCCTGGAATGAAAAGAAATGACAGTGGTGACATGGATGCCTTGTTCCTTCTTGACTTGCTCTATAAAAAGATGGCTACTGTTGGAGAAGACTCAAGGCCTCCAAGTCATTTGACGCCAAGCGTTGTTGATTCTGTTGTGTACAGGGTTGGTGGTAGCAATGGCTCTGTTGGAGCAGGCACTCATGAGAATTGCCAGTTGGACCAATATCATGATTATATGGAACCAACAAATGTTTTCCCCAACCATCAATCTACAAGTGAACCATCAATCCCCTGCTATGATGAAGTTTTGGGTTCTTCTAATTCAAGAACAGAGGTGTGCCGGAACAATGAAACCCAGGGCTTCAGATTAGGAGTAGATGTTGGTCATGAAAGAGAGGTCGAGCCTTTATCATATGAAGGTAACCTAGAGAGACTGGCTCTGCCTGATGAAGATCAAGGCTTGCTCGAGGCTTATGGTGGTTGCCAACAGAGGTTGGCAGCAGCCGAAAGCCTGGCATCCATGACCCCTCTGGGAAGGTGGGCATTGAGAAAAGTTGCCATGAAGGAGCAACAATCCGGCAATCACTTAAAGTCTAAGTTCTTCCCTGATTTGAACCCCTCTTGTAATGTACAGAACTCGAGCTATGGAGTTGACCTGCAGTTGACTACTACTGAGGATATGCAGCAGCAATATGCTAACGAAGATATTCAACAATATGCTGCTACCTGTGGAGAGGATCATTGGAACATGGAGCAAAATGTGATCTGTGGAGATGGTCAGTGGAACATTGACCAAGGTGTGATCCGTGCAGTGGATCAAAGGAACACTGAACAAGGTTCCATTGACCAAGGTGTGACCTGTGGAGTGGATCAAAGGAACATTGCACAAGGTGTGACCTCTGGAGAGGATCAATGTAACATCCATCGAGGTGTGATCTCCGAAGGGGATCAATGGAACAATGATCAAGGTGTGACAACCTATGGAGAGCAACAATGGCGTATGCACAATGGAGGGGACCAATGGAACAATGATCAAGGCGTCACAACCTCTGGAGAGCAACAGTGGCATATGAACTATGGAGAGGACCAATGGAATGCTGAGCATATCAACAACCTGAATTCTGACAGTTTGTTACCGAATTCTGAACTGCCAGCATCTACGCAAGAGCATTATGGCGAACAATCCAAATCTGCTAGGATACATGTAAAGGAGCGTTTGGGACCTCCCAAATTATCAACTGGAAGCATAAAAACGCGTTTGAGACCACCTATGAAATCACCTGGCAGTGTGAAGATGCGTTTGGGGCCTTCTGCAAATGATCCTAATATCAACATTTTAGGGTTCAAGCCTCGAGAACAATACAAAGCTCGAATAAGAAAAACAGATGACTTCAATGGAAGTATTCATCCTGAAGGGGATGGAATTCCAAAAGCTAAGACTGATGCTGCCGCTGGGAGCATTCATCCTCAGGGGAGTGCTCTTCCACAAGTCAAGACGGATGGTTTTATTGGAAGCATTCATCCTCAAGGGGGTGGTCATTCAATAGTTAAGACAGATGCTACTGGAAGCATTCATCCTCAAGGGAATGGTATTCCAAATGTTAAGAAAGGTGATTTTAATGGAAGCATTCGTCCTCAAGGGGGTAGTCTTTCAAAAGTTGATGTGAGAGCTGCAAAGAAAGAACCGCCTGAAGACTCTAAGGAGTTTAAGCAGCTGGTAGATGATGCCTTCATTAAGTTCATTAACATTTTGATTGAGAACCCACCTCAAAGAAGGAAAATCATGGAAGGAAAAGGAGGAAAGTGTTGCGTGTGTGCCAGCAATTCCAAAGAGTTTGTAGAAACGGCAACCTTAGCAAGGCATGCCTTCTTGTCGCCAAAGGTTGGTTTCAAAGCAGAACACCTGGGCTTTCATAAAGCACTTTGTGTGCTCTTGGGATGGGACAGTACAGCAGTCTCAAACACTAGGTGGGTTCAGCGGAATTTGCCAGATGCAGAATCCTTGGCTCTGAAGGAGGACCTAGTTATCTGGCCTCCTGTTGTTGTCATACACAATAGTTCTGTAGCAAATAAAAATCCTGAAGATGAAAGGCTGACGGTAAATGTTGAAGTTCTAAAGGCTATTCTTACAAGTATAGGATTTGTTGGGAGGAAGACCAATATGTACTGTGGGAAACCTGCCGATGGGAGTGTCATGGTGGTGAAGTTTCAGCCTACATTCTCTGGTTTGCAAGAAGCAGAAAGGCTTCACAAGCTGTTTGCTGATAACAAACATGGGAAGGCTGAGTGGCGGTATATCAATTCTGTTGGCCTCAGCAACAGCAGCAATGGAAAGCAAGACTTAGAGGCTGATGAGGCGAATTGTCTATATGGTTATTTGGGAAATGCAGACCATTGGGATGAACTTGACTTGGGAACCAAGAAGCACTTCGGGGTGAAGAGCAAGAAACAAATCAAGGCTATTGCAAATGCTTCTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XS

Protein Analysis

998

Amino Acids

109.55

Weight (kDa)

6.02

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XS PF03468 844 - 970 1.4e-18 XS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014702)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29670
malus_domestica MD03G1136700.v1.1
prunus_persica Prupe.6G121100_v2.0.a1 Prupe.6G121100_v2.0.a1
pyrus_communis pycom03g09250
rosa_chinensis RchiOBHm_Chr5g0055031
rosa_laevigata RLG00000034958
rosa_multiflora Rmu_co8511567.1_g000001 Rmu_sc0000925.1_g000013
rosa_roxburghii Rroxscaffold_1G00025460
rosa_rugosa Rorug05G0290200 Rorug05G0290300
rosa_samantha Rh5AG360200 Rh5BG371200 Rh5CG393500 Rh5DG385000
rosa_wichuraiana Rw5G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 215
Acc36I ACCTGC 3 cut(s) 215, 1179, 2701
AccB7I CCANNNNNTGG 1 cut(s) 2399
AccI GTMKAC 1 cut(s) 216
AccII CGCG 5 cut(s) 15, 138, 261, 378, 1771
AciI CCGC 8 cut(s) 15, 138, 261, 378, 1965, 2201, 2494, 2806
AclWI GGATC 7 cut(s) 1260, 1312, 1338, 1392, 1431, 1470, 1829
AcoI YGGCCR 1 cut(s) 427
AcsI RAATTY 4 cut(s) 1633, 1654, 1938, 2497
AcuI CTGAAG 5 cut(s) 862, 1947, 2226, 2546, 2616
AcyI GRCGYC 2 cut(s) 647, 1554
AdeI CACNNNGTG 3 cut(s) 1406, 2441, 2484
AfaI GTAC 4 cut(s) 674, 1146, 2464, 2681
AfiI CCNNNNNNNGG 7 cut(s) 487, 1327, 2045, 2156, 2373, 2399, 2699
AflIII ACRYGT 2 cut(s) 1717, 1769
AjnI CCWGG 6 cut(s) 482, 535, 870, 1026, 1795, 2418
AjuI GAANNNNNNNTTGG 6 cut(s) 713, 745, 1799, 1831, 2927, 2959
AloI GAACNNNNNNTCC 4 cut(s) 560, 592, 786, 818
AluBI AGCT 7 cut(s) 242, 1158, 1883, 1949, 2186, 2230, 2770
AluI AGCT 7 cut(s) 242, 1158, 1883, 1949, 2186, 2230, 2770
Alw21I GWGCWC 3 cut(s) 480, 1996, 2448
Alw26I GTCTC 4 cut(s) 193, 940, 1771, 2476
Alw44I GTGCAC 1 cut(s) 476
AlwI GGATC 7 cut(s) 1260, 1312, 1338, 1392, 1431, 1470, 1829
Ama87I CYCGRG 3 cut(s) 980, 1153, 1866
AoxI GGCC 8 cut(s) 166, 287, 419, 427, 629, 1820, 2546, 2824
ApaLI GTGCAC 1 cut(s) 476
ApoI RAATTY 4 cut(s) 1633, 1654, 1938, 2497
Asp700I GAANNNNTTC 3 cut(s) 1221, 2760, 2942
AspS9I GGNCC 9 cut(s) 166, 287, 419, 733, 1531, 1600, 1736, 1820, 2533
AsuHPI GGTGA 6 cut(s) 342, 572, 1785, 2138, 2728, 2962
AvaI CYCGRG 3 cut(s) 980, 1153, 1866
AvaII GGWCC 5 cut(s) 733, 1531, 1600, 1736, 2533
AxyI CCTNAGG 1 cut(s) 1983
BaeGI GKGCMC 1 cut(s) 480
BalI TGGCCA 1 cut(s) 429
BanII GRGCYC 1 cut(s) 493
BbsI GAAGAC 3 cut(s) 627, 2214, 2675
Bbv12I GWGCWC 3 cut(s) 480, 1996, 2448
BbvCI CCTCAGC 3 cut(s) 282, 414, 2828
BccI CCATC 9 cut(s) 598, 786, 805, 1283, 1446, 1928, 2009, 2448, 2693
BceAI ACGGC 1 cut(s) 2376
BciT130I CCWGG 6 cut(s) 484, 537, 872, 1028, 1797, 2420
BciVI GTATCC 1 cut(s) 1707
BclI TGATCA 2 cut(s) 1477, 1546
BcoDI GTCTC 4 cut(s) 193, 940, 1771, 2476
BfaI CTAG 5 cut(s) 78, 941, 1710, 2481, 2537
BfmI CTRYAG 2 cut(s) 1172, 2577
BfuAI ACCTGC 3 cut(s) 215, 1179, 2701
BfuI GTATCC 1 cut(s) 1707
BlpI GCTNAGC 2 cut(s) 492, 1614
Bme1390I CCNGG 6 cut(s) 484, 537, 872, 1028, 1797, 2420
Bme18I GGWCC 5 cut(s) 733, 1531, 1600, 1736, 2533
BmeT110I CYCGRG 3 cut(s) 980, 1153, 1866
BmgT120I GGNCC 9 cut(s) 166, 287, 419, 733, 1531, 1600, 1736, 1820, 2533
BmiI GGNNCC 9 cut(s) 288, 420, 534, 756, 1354, 1532, 1737, 1821, 2932
BmrFI CCNGG 6 cut(s) 484, 537, 872, 1028, 1797, 2420
BmsI GCATC 9 cut(s) 242, 559, 1040, 1679, 1800, 1948, 2062, 2230, 2497
BpiI GAAGAC 3 cut(s) 627, 2214, 2675
BplI GAGNNNNNCTC 2 cut(s) 937, 969
BpmI CTGGAG 2 cut(s) 1437, 1587
Bpu10I CCTNAGC 4 cut(s) 282, 414, 2368, 2828
Bpu1102I GCTNAGC 2 cut(s) 492, 1614
BpuEI CTTGAG 6 cut(s) 168, 300, 610, 2025, 2079, 2136
BsaBI GATNNNNATC 1 cut(s) 966
BsaHI GRCGYC 2 cut(s) 647, 1554
BsaI GGTCTC 1 cut(s) 1771
BsaJI CCNNGG 9 cut(s) 169, 430, 482, 870, 871, 1309, 1363, 2419, 2517
BsaXI ACNNNNNCTCC 2 cut(s) 879, 909
Bsc4I CCNNNNNNNGG 7 cut(s) 487, 1327, 2045, 2156, 2373, 2399, 2699
Bse1I ACTGG 4 cut(s) 727, 954, 1759, 2083
Bse21I CCTNAGG 1 cut(s) 1983
Bse3DI GCAATG 6 cut(s) 54, 282, 414, 697, 1395, 2848
Bse8I GATNNNNATC 1 cut(s) 966
BseBI CCWGG 6 cut(s) 484, 537, 872, 1028, 1797, 2420
BseDI CCNNGG 9 cut(s) 169, 430, 482, 870, 871, 1309, 1363, 2419, 2517
BseJI GATNNNNATC 1 cut(s) 966
BseLI CCNNNNNNNGG 7 cut(s) 487, 1327, 2045, 2156, 2373, 2399, 2699
BseMI GCAATG 6 cut(s) 54, 282, 414, 697, 1395, 2848
BseNI ACTGG 4 cut(s) 727, 954, 1759, 2083
BseSI GKGCMC 1 cut(s) 480
BseYI CCCAGC 1 cut(s) 1967
BsgI GTGCAG 1 cut(s) 1344
Bsh1236I CGCG 5 cut(s) 15, 138, 261, 378, 1771
BshFI GGCC 8 cut(s) 168, 289, 421, 429, 631, 1822, 2548, 2826
BsiHKAI GWGCWC 3 cut(s) 480, 1996, 2448
BsiHKCI CYCGRG 3 cut(s) 980, 1153, 1866
BsiSI CCGG 2 cut(s) 856, 1092
BslFI GGGAC 4 cut(s) 536, 1544, 1749, 2471
BslI CCNNNNNNNGG 7 cut(s) 487, 1327, 2045, 2156, 2373, 2399, 2699
BsmAI GTCTC 4 cut(s) 193, 940, 1771, 2476
BsmFI GGGAC 4 cut(s) 536, 1544, 1749, 2471
BsmI GAATGC 5 cut(s) 1615, 1974, 2031, 2085, 2142
BsnI GGCC 8 cut(s) 168, 289, 421, 429, 631, 1822, 2548, 2826
Bso31I GGTCTC 1 cut(s) 1771
BsoBI CYCGRG 3 cut(s) 980, 1153, 1866
Bsp1286I GDGCHC 4 cut(s) 480, 493, 1996, 2448
Bsp1407I TGTACA 2 cut(s) 672, 1144
Bsp1720I GCTNAGC 2 cut(s) 492, 1614
Bsp19I CCATGG 2 cut(s) 169, 430
BspACI CCGC 8 cut(s) 15, 138, 261, 378, 1965, 2201, 2494, 2806
BspANI GGCC 8 cut(s) 168, 289, 421, 429, 631, 1822, 2548, 2826
BspFNI CGCG 5 cut(s) 15, 138, 261, 378, 1771
BspHI TCATGA 3 cut(s) 715, 742, 901
BspLI GGNNCC 9 cut(s) 288, 420, 534, 756, 1354, 1532, 1737, 1821, 2932
BspMAI CTGCAG 1 cut(s) 1176
BspMI ACCTGC 3 cut(s) 215, 1179, 2701
BspPI GGATC 7 cut(s) 1260, 1312, 1338, 1392, 1431, 1470, 1829
BspQI GCTCTTC 2 cut(s) 2001, 2948
BspTNI GGTCTC 1 cut(s) 1771
BsrDI GCAATG 6 cut(s) 54, 282, 414, 697, 1395, 2848
BsrGI TGTACA 2 cut(s) 672, 1144
BsrI ACTGG 4 cut(s) 727, 954, 1759, 2083
BssECI CCNNGG 9 cut(s) 169, 430, 482, 870, 871, 1309, 1363, 2419, 2517
BssNI GRCGYC 2 cut(s) 647, 1554
BssT1I CCWWGG 5 cut(s) 169, 430, 1309, 1363, 2517
Bst2UI CCWGG 6 cut(s) 484, 537, 872, 1028, 1797, 2420
Bst4CI ACNGT 7 cut(s) 557, 613, 1578, 1643, 2462, 2614, 2684
Bst6I CTCTTC 2 cut(s) 2001, 2948
BstACI GRCGYC 2 cut(s) 647, 1554
BstAPI GCANNNNNTGC 2 cut(s) 230, 2378
BstAUI TGTACA 2 cut(s) 672, 1144
BstC8I GCNNGC 5 cut(s) 709, 977, 1668, 2335, 2379
BstDSI CCRYGG 2 cut(s) 169, 430
BstEII GGTNACC 1 cut(s) 935
BstENI CCTNNNNNAGG 1 cut(s) 2371
BstFNI CGCG 5 cut(s) 15, 138, 261, 378, 1771
BstMAI GTCTC 4 cut(s) 193, 940, 1771, 2476
BstNI CCWGG 6 cut(s) 484, 537, 872, 1028, 1797, 2420
BstNSI RCATGY 2 cut(s) 1721, 2381
BstPI GGTNACC 1 cut(s) 935
BstSCI CCNGG 6 cut(s) 482, 535, 870, 1026, 1795, 2418
BstSFI CTRYAG 2 cut(s) 1172, 2577
BstSLI GKGCMC 1 cut(s) 480
BstUI CGCG 5 cut(s) 15, 138, 261, 378, 1771
BstV2I GAAGAC 3 cut(s) 627, 2214, 2675
Bsu36I CCTNAGG 1 cut(s) 1983
BsuI GTATCC 1 cut(s) 1707
BsuRI GGCC 8 cut(s) 168, 289, 421, 429, 631, 1822, 2548, 2826
BtgI CCRYGG 2 cut(s) 169, 430
BtsI GCAGTG 2 cut(s) 1332, 1807
BtsIMutI CAGTG 6 cut(s) 562, 1301, 1332, 1341, 1583, 1807
BveI ACCTGC 3 cut(s) 215, 1179, 2701
Cac8I GCNNGC 5 cut(s) 709, 977, 1668, 2335, 2379
CciI TCATGA 3 cut(s) 715, 742, 901
Cfr13I GGNCC 9 cut(s) 166, 287, 419, 733, 1531, 1600, 1736, 1820, 2533
CseI GACGC 2 cut(s) 655, 1543
Csp6I GTAC 4 cut(s) 673, 1145, 2463, 2680
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviQI GTAC 4 cut(s) 673, 1145, 2463, 2680
DraIII CACNNNGTG 3 cut(s) 1406, 2441, 2484
EaeI YGGCCR 1 cut(s) 427
Eam1104I CTCTTC 2 cut(s) 2001, 2948
EarI CTCTTC 2 cut(s) 2001, 2948
Eco130I CCWWGG 5 cut(s) 169, 430, 1309, 1363, 2517
Eco147I AGGCCT 1 cut(s) 631
Eco24I GRGCYC 1 cut(s) 493
Eco31I GGTCTC 1 cut(s) 1771
Eco47I GGWCC 5 cut(s) 733, 1531, 1600, 1736, 2533
Eco57I CTGAAG 5 cut(s) 862, 1947, 2226, 2546, 2616
Eco81I CCTNAGG 1 cut(s) 1983
Eco88I CYCGRG 3 cut(s) 980, 1153, 1866
Eco91I GGTNACC 1 cut(s) 935
EcoNI CCTNNNNNAGG 1 cut(s) 2371
EcoO109I RGGNCCY 5 cut(s) 287, 419, 1736, 1820, 2533
EcoO65I GGTNACC 1 cut(s) 935
EcoRI GAATTC 3 cut(s) 1633, 1654, 1938
EcoRII CCWGG 6 cut(s) 482, 535, 870, 1026, 1795, 2418
EcoT14I CCWWGG 5 cut(s) 169, 430, 1309, 1363, 2517
EcoT38I GRGCYC 1 cut(s) 493
ErhI CCWWGG 5 cut(s) 169, 430, 1309, 1363, 2517
FalI AAGNNNNNCTT 4 cut(s) 2840, 2872, 2927, 2959
FaqI GGGAC 4 cut(s) 536, 1544, 1749, 2471
FauNDI CATATG 2 cut(s) 928, 1584
FbaI TGATCA 2 cut(s) 1477, 1546
FblI GTMKAC 1 cut(s) 216
FriOI GRGCYC 1 cut(s) 493
FspBI CTAG 5 cut(s) 78, 941, 1710, 2481, 2537
GsaI CCCAGC 1 cut(s) 1971
GsuI CTGGAG 2 cut(s) 1437, 1587
HaeIII GGCC 8 cut(s) 168, 289, 421, 429, 631, 1822, 2548, 2826
HapII CCGG 2 cut(s) 856, 1092
HgaI GACGC 2 cut(s) 655, 1543
Hin1I GRCGYC 2 cut(s) 647, 1554
HincII GTYRAC 3 cut(s) 191, 1168, 1179
HindII GTYRAC 3 cut(s) 191, 1168, 1179
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 5 cut(s) 499, 623, 662, 2210, 2513
HpaII CCGG 2 cut(s) 856, 1092
HphI GGTGA 6 cut(s) 342, 572, 1785, 2138, 2728, 2962
Hpy166II GTNNAC 9 cut(s) 97, 191, 217, 350, 478, 673, 794, 1168, 1179
Hpy188I TCNGA 9 cut(s) 123, 238, 385, 504, 881, 1456, 1639, 1660, 2526
Hpy8I GTNNAC 9 cut(s) 97, 191, 217, 350, 478, 673, 794, 1168, 1179
HpyCH4III ACNGT 7 cut(s) 557, 613, 1578, 1643, 2462, 2614, 2684
Hsp92I GRCGYC 2 cut(s) 647, 1554
Ksp22I TGATCA 2 cut(s) 1477, 1546
LguI GCTCTTC 2 cut(s) 2001, 2948
LmnI GCTCC 5 cut(s) 704, 1081, 1267, 1726, 1971
LweI GCATC 9 cut(s) 242, 559, 1040, 1679, 1800, 1948, 2062, 2230, 2497
MaeI CTAG 5 cut(s) 78, 941, 1710, 2481, 2537
MaeIII GTNAC 9 cut(s) 68, 560, 935, 1369, 1408, 1430, 1486, 1555, 1647
MfeI CAATTG 2 cut(s) 114, 354
MhlI GDGCHC 4 cut(s) 480, 493, 1996, 2448
MlsI TGGCCA 1 cut(s) 429
MluI ACGCGT 1 cut(s) 1769
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 3 cut(s) 508, 617, 2204
MmeI TCCRAC 3 cut(s) 595, 682, 711
Mox20I TGGCCA 1 cut(s) 429
MroXI GAANNNNTTC 3 cut(s) 1221, 2760, 2942
MscI TGGCCA 1 cut(s) 429
MseI TTAA 8 cut(s) 393, 1103, 2064, 2118, 2133, 2223, 2250, 2259
MslI CAYNNNNRTG 4 cut(s) 339, 1443, 2714, 2913
Msp20I TGGCCA 1 cut(s) 429
MspA1I CMGCKG 3 cut(s) 1967, 2230, 2494
MspI CCGG 2 cut(s) 856, 1092
MspR9I CCNGG 6 cut(s) 484, 537, 872, 1028, 1797, 2420
MunI CAATTG 2 cut(s) 114, 354
Mva1269I GAATGC 5 cut(s) 1615, 1974, 2031, 2085, 2142
MvaI CCWGG 6 cut(s) 484, 537, 872, 1028, 1797, 2420
MvnI CGCG 5 cut(s) 15, 138, 261, 378, 1771
NcoI CCATGG 2 cut(s) 169, 430
NdeI CATATG 2 cut(s) 928, 1584
NlaIV GGNNCC 9 cut(s) 288, 420, 534, 756, 1354, 1532, 1737, 1821, 2932
NmuCI GTSAC 6 cut(s) 68, 560, 1369, 1408, 1486, 1555
NspI RCATGY 2 cut(s) 1721, 2381
PaeI GCATGC 1 cut(s) 2381
PaeR7I CTCGAG 3 cut(s) 980, 1153, 1866
PagI TCATGA 3 cut(s) 715, 742, 901
PaqCI CACCTGC 1 cut(s) 215
PasI CCCWGGG 1 cut(s) 871
PceI AGGCCT 1 cut(s) 631
PciI ACATGT 1 cut(s) 1717
PciSI GCTCTTC 2 cut(s) 2001, 2948
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PctI GAATGC 5 cut(s) 1615, 1974, 2031, 2085, 2142
PdmI GAANNNNTTC 3 cut(s) 1221, 2760, 2942
PfeI GAWTC 2 cut(s) 662, 2513
PflMI CCANNNNNTGG 1 cut(s) 2399
PfoI TCCNGGA 1 cut(s) 535
PleI GAGTC 3 cut(s) 507, 617, 2204
PpsI GAGTC 3 cut(s) 507, 617, 2204
PpuMI RGGWCCY 2 cut(s) 1736, 2533
PscI ACATGT 1 cut(s) 1717
Psp5II RGGWCCY 2 cut(s) 1736, 2533
Psp6I CCWGG 6 cut(s) 482, 535, 870, 1026, 1795, 2418
PspEI GGTNACC 1 cut(s) 935
PspFI CCCAGC 1 cut(s) 1967
PspGI CCWGG 6 cut(s) 482, 535, 870, 1026, 1795, 2418
PspN4I GGNNCC 9 cut(s) 288, 420, 534, 756, 1354, 1532, 1737, 1821, 2932
PspPI GGNCC 9 cut(s) 166, 287, 419, 733, 1531, 1600, 1736, 1820, 2533
PspPPI RGGWCCY 2 cut(s) 1736, 2533
PspXI VCTCGAGB 2 cut(s) 980, 1153
PstI CTGCAG 1 cut(s) 1176
PvuII CAGCTG 1 cut(s) 2230
RsaI GTAC 4 cut(s) 674, 1146, 2464, 2681
RsaNI GTAC 4 cut(s) 673, 1145, 2463, 2680
RseI CAYNNNNRTG 4 cut(s) 339, 1443, 2714, 2913
SapI GCTCTTC 2 cut(s) 2001, 2948
SaqAI TTAA 8 cut(s) 393, 1103, 2064, 2118, 2133, 2223, 2250, 2259
Sau96I GGNCC 9 cut(s) 166, 287, 419, 733, 1531, 1600, 1736, 1820, 2533
SchI GAGTC 3 cut(s) 508, 617, 2204
ScrFI CCNGG 6 cut(s) 484, 537, 872, 1028, 1797, 2420
SduI GDGCHC 4 cut(s) 480, 493, 1996, 2448
SfaNI GCATC 9 cut(s) 242, 559, 1040, 1679, 1800, 1948, 2062, 2230, 2497
SfcI CTRYAG 2 cut(s) 1172, 2577
Sfr274I CTCGAG 3 cut(s) 980, 1153, 1866
SinI GGWCC 5 cut(s) 733, 1531, 1600, 1736, 2533
SlaI CTCGAG 3 cut(s) 980, 1153, 1866
SmiMI CAYNNNNRTG 4 cut(s) 339, 1443, 2714, 2913
SmlI CTYRAG 9 cut(s) 183, 315, 625, 980, 1153, 1866, 2040, 2094, 2151
SmoI CTYRAG 9 cut(s) 183, 315, 625, 980, 1153, 1866, 2040, 2094, 2151
SphI GCATGC 1 cut(s) 2381
SseBI AGGCCT 1 cut(s) 631
SsiI CCGC 8 cut(s) 15, 138, 261, 378, 1965, 2201, 2494, 2806
SspMI CTAG 5 cut(s) 78, 941, 1710, 2481, 2537
StuI AGGCCT 1 cut(s) 631
StyD4I CCNGG 6 cut(s) 482, 535, 870, 1026, 1795, 2418
StyI CCWWGG 5 cut(s) 169, 430, 1309, 1363, 2517
TaaI ACNGT 7 cut(s) 557, 613, 1578, 1643, 2462, 2614, 2684
TaqI TCGA 7 cut(s) 22, 915, 981, 1154, 1441, 1867, 1885
TatI WGTACW 4 cut(s) 672, 1144, 2462, 2679
TauI GCSGC 4 cut(s) 18, 141, 264, 1967
TfiI GAWTC 2 cut(s) 662, 2513
Tru1I TTAA 8 cut(s) 393, 1103, 2064, 2118, 2133, 2223, 2250, 2259
Tru9I TTAA 8 cut(s) 393, 1103, 2064, 2118, 2133, 2223, 2250, 2259
TscAI CASTG 6 cut(s) 562, 1301, 1332, 1348, 1583, 1807
TseFI GTSAC 6 cut(s) 68, 560, 1369, 1408, 1486, 1555
Tsp45I GTSAC 6 cut(s) 68, 560, 1369, 1408, 1486, 1555
TspGWI ACGGA 3 cut(s) 97, 1310, 2027
TspRI CASTG 6 cut(s) 562, 1301, 1332, 1348, 1583, 1807
Van91I CCANNNNNTGG 1 cut(s) 2399
VneI GTGCAC 1 cut(s) 476
VpaK11BI GGWCC 5 cut(s) 733, 1531, 1600, 1736, 2533
XagI CCTNNNNNAGG 1 cut(s) 2371
XapI RAATTY 4 cut(s) 1633, 1654, 1938, 2497
XceI RCATGY 2 cut(s) 1721, 2381
XcmI CCANNNNNNNNNTGG 1 cut(s) 1042
XhoI CTCGAG 3 cut(s) 980, 1153, 1866
XmiI GTMKAC 1 cut(s) 216
XmnI GAANNNNTTC 3 cut(s) 1221, 2760, 2942
XspI CTAG 5 cut(s) 78, 941, 1710, 2481, 2537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.