Rmu_co8511567.1_g000001

XS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8511567.1
OG0014702
Physical Location & Seq
Forward (+)
136 .. 3009
2874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8511567.1_g000001.1.cds

Sequence Viewer

Length: 2874 bp
atgaagaagcggaggtattgtgactttgcgggtcggtcttcgactaacgacggtgagacgacggaaggagaccgacgttcgtactcgggtcgggtttcgggttcggaccaaaccgaaagagagtactttgaagacgacggcggtacggctaggcaaccgttgaaaccgtcgcagacgcatttgagcggcggcttgcgtcaatgcgaatcactgtcgatgaagtttcagtggaacaatctgctggcccggaatccgaatccgggttctaacccgagaaaggctccgggtctgaaccgacccgacttggattatagcaaccggagtggtagttatagactggattatgaaatgggttatggcggaaggggtttgggtgtggaccagagacagcagtatgggcattttgatcatcgtgggttcacgtcgccattgccgaaatcccatcttggtggtctccaagaaaacgaggaggaccaccgcccaatcccatatgcgactctggaagacgagcccaactttacttctggaactgggtattcatcaatggagggttttcgcggcgttcgagatgaatatgacagaagcagagcaatggctgggttgccaataggtcacccgcctagacagaatgagttggtggactgtggaggttcatcaattgctttgagtgagggttttcgcggggagttcattagaagcagagaaatgggccatggtggatattctcaaggtcaaacagcgagacacgatgagttggtggacaatgcaggtggtgcatcagaagctttgaatgagggttttcgcggcagaagcagagcaatggctgaggggcctgttggcagccatgctggatatactcaaggacttacgccaagacactcacatggtgagctcccatttgctttgaatgagggttttcgcggttcggatgagtttaacaaaagcagagcaatggctgaggggcctattggccatggtggatattctcatggtcaagcaccaagaaagaatgagttggtgcaccccaggtgggctcagcagagtccgaaagaggaaatgggtagggactacaaggttcctggaatgaaaagaaatgacaatggtgacatggatgccttgttccttcttgacttgctctataaaaagatggctactgttggagaagactcaaggcctccaagtcatttgacgccaagcgttgttgattccgttgtgtacagggttggtggtagcaatggctctgttggagcaggcactcatgagaattgccagttggaccaatatcatgattatatggaaccaacaaatgttttccccaaccatcaatctacaagtgaaccatcaatcccctgctatgatgaagttttgggttcttctaactcaagattaggagtagatgttggtcatgaaagagaggtcgagcctttatcatatgaaggtaaccgagagagactggttctgcctgatgaagatcaaggcttgctcgaggcttatggtggttgccaacagaggttggcagcagctgaaagcctggcatccatgacccctctgggaaggtgggcattgagaaaagttgccatgaaggagcaacaatccggcaatcactcaaagtctaagttcttccctgatttgaacccctcttgtaatgtacagaactcgagctatgaagttgacatgcagttgactactactgaggatatgcagcagcaatatgctaacgaagatattcaacaatatgctgctacctgtggagaggatcattggaacatggagcaaaatgtgatctgcggagatggtcaatggaacattgaccaaggtgtgacccgtgcagtggatcaaaggaacactgaacaaggttccattgaccaaggtgtgacctgtggagtggatcaaaggaacattgcacaagttgtgacctctggagaggatcaatgtaacatccatcgaggtgtgatctccagagggaatcaatggaacaatgatcaaggtttgacaacctatggagagcaacaatggcgtatggacaatggaggggagcaatggaacaatgatcaaggcgtcacaacctctggagagcaacagtggcgtatgaactatggagaggaccaatggaatgctgagcatatcaacaacctgaattctgacagtttgttaccgaattctgaactgccagcatctacgcaagagcattatggcgaacaatccaaatctgctaggatacatgtaaaggagcgtttgggacctcccaaattatcaactggaagcataaaaacgcggttgagaccacctatgaaatcacctggcagtgtgaagatgtgtttggggccttctgcaaatgatcctaatatcaacattttagatcctaatatcaacattttaggtttcaagcctcgagaacaatacaaatctcaaataagaaaaacagatgacctcagtggaagtattcatcctgaaggggatggaattccaaaagctaagactgatgctgccgctgggagcattcatcctcaggcgagtgctcttccacaagtcaagatggatggttttattggaagcattcatcctcaagggggtgctcattcaatagttaagacagatgctactggaagcattcatcctcaagggaatggtattccaaatgttaagaaaggtgattttaatggaagcattcgtcctcaaggggctggtctttcaaaagttgatgtgagagctgcaaagaaagaaccgcctgaagactctaaggagtttaagcagctggtagatgatgccttcattaagttcattaacattttgattgagaacccacctcaaagaaggaaaatcatggaaggaaaaggaggaaagtgttgcgtgtgtgccaggtctgtcatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XS

Protein Analysis

957

Amino Acids

105.3

Weight (kDa)

5.8

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014702)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29670
malus_domestica MD03G1136700.v1.1
prunus_persica Prupe.6G121100_v2.0.a1 Prupe.6G121100_v2.0.a1
pyrus_communis pycom03g09250
rosa_chinensis RchiOBHm_Chr5g0055031
rosa_laevigata RLG00000034958
rosa_multiflora Rmu_co8511567.1_g000001 Rmu_sc0000925.1_g000013
rosa_roxburghii Rroxscaffold_1G00025460
rosa_rugosa Rorug05G0290200 Rorug05G0290300
rosa_samantha Rh5AG360200 Rh5BG371200 Rh5CG393500 Rh5DG385000
rosa_wichuraiana Rw5G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 758
Acc36I ACCTGC 1 cut(s) 758
AccBSI CCGCTC 1 cut(s) 186
AccII CGCG 5 cut(s) 558, 681, 804, 921, 2275
AclWI GGATC 6 cut(s) 1764, 1842, 1896, 1935, 2333, 2354
AcoI YGGCCR 1 cut(s) 970
AcsI RAATTY 3 cut(s) 2137, 2158, 2463
AcuI CTGAAG 2 cut(s) 2472, 2751
AcyI GRCGYC 2 cut(s) 1190, 2058
AdeI CACNNNGTG 1 cut(s) 887
AfaI GTAC 5 cut(s) 83, 125, 145, 1217, 1650
AfiI CCNNNNNNNGG 5 cut(s) 260, 277, 1030, 1831, 2570
AflIII ACRYGT 1 cut(s) 2221
AgsI TTSAA 9 cut(s) 131, 163, 790, 907, 1633, 1730, 2386, 2583, 2694
AjiI CACGTC 1 cut(s) 423
AjnI CCWGG 5 cut(s) 1025, 1078, 1530, 2299, 2858
AjuI GAANNNNNNNTTGG 4 cut(s) 1256, 1288, 2303, 2335
AloI GAACNNNNNNTCC 4 cut(s) 1103, 1135, 1329, 1361
AluBI AGCT 7 cut(s) 785, 892, 1523, 1662, 2474, 2711, 2755
AluI AGCT 7 cut(s) 785, 892, 1523, 1662, 2474, 2711, 2755
Alw21I GWGCWC 4 cut(s) 894, 1023, 2521, 2578
Alw26I GTCTC 7 cut(s) 50, 63, 379, 458, 736, 1444, 2275
Alw44I GTGCAC 1 cut(s) 1019
AlwI GGATC 6 cut(s) 1764, 1842, 1896, 1935, 2333, 2354
AlwNI CAGNNNCTG 1 cut(s) 1523
Ama87I CYCGRG 5 cut(s) 85, 271, 1484, 1657, 2391
AoxI GGCC 7 cut(s) 243, 709, 830, 962, 970, 1172, 2324
ApaLI GTGCAC 1 cut(s) 1019
ApeKI GCWGC 9 cut(s) 840, 1517, 1520, 1702, 1705, 1739, 2486, 2711, 2752
ApoI RAATTY 3 cut(s) 2137, 2158, 2463
Asp700I GAANNNNTTC 1 cut(s) 1725
AsuC2I CCSGG 3 cut(s) 247, 261, 285
AsuHPI GGTGA 6 cut(s) 65, 605, 899, 1115, 2289, 2663
AvaI CYCGRG 5 cut(s) 85, 271, 1484, 1657, 2391
AvaII GGWCC 6 cut(s) 106, 379, 472, 1276, 2104, 2240
AxyI CCTNAGG 1 cut(s) 2508
BaeGI GKGCMC 1 cut(s) 1023
BalI TGGCCA 1 cut(s) 972
BanII GRGCYC 3 cut(s) 513, 894, 1036
BbsI GAAGAC 5 cut(s) 30, 138, 510, 1170, 2739
Bbv12I GWGCWC 4 cut(s) 894, 1023, 2521, 2578
BbvCI CCTCAGC 2 cut(s) 825, 957
BbvI GCAGC 9 cut(s) 852, 1529, 1532, 1714, 1717, 1726, 2473, 2698, 2764
BccI CCATC 9 cut(s) 450, 1141, 1329, 1348, 1787, 1950, 2453, 2530, 2534
BceAI ACGGC 2 cut(s) 154, 162
BciT130I CCWGG 5 cut(s) 1027, 1080, 1532, 2301, 2860
BciVI GTATCC 1 cut(s) 2211
BclI TGATCA 3 cut(s) 406, 1981, 2050
BcnI CCSGG 3 cut(s) 247, 261, 285
BcoDI GTCTC 7 cut(s) 50, 63, 379, 458, 736, 1444, 2275
BfaI CTAG 3 cut(s) 150, 621, 2214
BfuAI ACCTGC 1 cut(s) 758
BfuI GTATCC 1 cut(s) 2211
BlpI GCTNAGC 2 cut(s) 1035, 2118
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 8 cut(s) 247, 261, 285, 1027, 1080, 1532, 2301, 2860
Bme18I GGWCC 6 cut(s) 106, 379, 472, 1276, 2104, 2240
BmeT110I CYCGRG 5 cut(s) 85, 271, 1484, 1657, 2391
BmgBI CACGTC 1 cut(s) 423
BmiI GGNNCC 8 cut(s) 282, 831, 963, 1077, 1299, 1858, 2241, 2325
BmrFI CCNGG 8 cut(s) 247, 261, 285, 1027, 1080, 1532, 2301, 2860
BmrI ACTGGG 1 cut(s) 540
BmsI GCATC 7 cut(s) 785, 1102, 1544, 2183, 2473, 2587, 2755
BmuI ACTGGG 1 cut(s) 540
BpiI GAAGAC 5 cut(s) 30, 138, 510, 1170, 2739
BplI GAGNNNNNCTC 2 cut(s) 265, 297
BpmI CTGGAG 3 cut(s) 1941, 1942, 2091
Bpu10I CCTNAGC 2 cut(s) 825, 957
Bpu1102I GCTNAGC 2 cut(s) 1035, 2118
BpuEI CTTGAG 7 cut(s) 711, 843, 1153, 1366, 2550, 2604, 2661
BpuMI CCSGG 3 cut(s) 247, 261, 285
BsaBI GATNNNNATC 1 cut(s) 1470
BsaHI GRCGYC 2 cut(s) 1190, 2058
BsaI GGTCTC 3 cut(s) 63, 458, 2275
BsaJI CCNNGG 5 cut(s) 712, 973, 1025, 1813, 1867
BsaWI WCCGGW 1 cut(s) 318
BsaXI ACNNNNNCTCC 5 cut(s) 34, 313, 343, 1383, 1413
Bsc4I CCNNNNNNNGG 5 cut(s) 260, 277, 1030, 1831, 2570
Bse1I ACTGG 6 cut(s) 342, 535, 1270, 1458, 2263, 2608
Bse21I CCTNAGG 1 cut(s) 2508
Bse3DI GCAATG 7 cut(s) 428, 597, 825, 957, 1240, 1899, 2045
Bse8I GATNNNNATC 1 cut(s) 1470
BseBI CCWGG 5 cut(s) 1027, 1080, 1532, 2301, 2860
BseDI CCNNGG 5 cut(s) 712, 973, 1025, 1813, 1867
BseJI GATNNNNATC 1 cut(s) 1470
BseLI CCNNNNNNNGG 5 cut(s) 260, 277, 1030, 1831, 2570
BseMI GCAATG 7 cut(s) 428, 597, 825, 957, 1240, 1899, 2045
BseMII CTCAG 7 cut(s) 816, 948, 1049, 1683, 2109, 2446, 2522
BseNI ACTGG 6 cut(s) 342, 535, 1270, 1458, 2263, 2608
BseRI GAGGAG 1 cut(s) 482
BseSI GKGCMC 1 cut(s) 1023
BseXI GCAGC 9 cut(s) 852, 1529, 1532, 1714, 1717, 1726, 2473, 2698, 2764
BseYI CCCAGC 2 cut(s) 596, 2492
BsgI GTGCAG 1 cut(s) 1848
Bsh1236I CGCG 5 cut(s) 558, 681, 804, 921, 2275
BshFI GGCC 7 cut(s) 245, 711, 832, 964, 972, 1174, 2326
BsiHKAI GWGCWC 4 cut(s) 894, 1023, 2521, 2578
BsiHKCI CYCGRG 5 cut(s) 85, 271, 1484, 1657, 2391
BsiSI CCGG 5 cut(s) 247, 260, 284, 319, 1596
BslFI GGGAC 2 cut(s) 1079, 2253
BslI CCNNNNNNNGG 5 cut(s) 260, 277, 1030, 1831, 2570
BsmAI GTCTC 7 cut(s) 50, 63, 379, 458, 736, 1444, 2275
BsmBI CGTCTC 1 cut(s) 50
BsmFI GGGAC 2 cut(s) 1079, 2253
BsmI GAATGC 5 cut(s) 2119, 2499, 2556, 2610, 2667
BsnI GGCC 7 cut(s) 245, 711, 832, 964, 972, 1174, 2326
Bso31I GGTCTC 3 cut(s) 63, 458, 2275
BsoBI CYCGRG 5 cut(s) 85, 271, 1484, 1657, 2391
Bsp1286I GDGCHC 6 cut(s) 513, 894, 1023, 1036, 2521, 2578
Bsp1407I TGTACA 2 cut(s) 1215, 1648
Bsp1720I GCTNAGC 2 cut(s) 1035, 2118
Bsp19I CCATGG 2 cut(s) 712, 973
BspANI GGCC 7 cut(s) 245, 711, 832, 964, 972, 1174, 2326
BspCNI CTCAG 7 cut(s) 817, 949, 1048, 1684, 2110, 2445, 2521
BspFNI CGCG 5 cut(s) 558, 681, 804, 921, 2275
BspHI TCATGA 3 cut(s) 1258, 1285, 1405
BspLI GGNNCC 8 cut(s) 282, 831, 963, 1077, 1299, 1858, 2241, 2325
BspMI ACCTGC 1 cut(s) 758
BspPI GGATC 6 cut(s) 1764, 1842, 1896, 1935, 2333, 2354
BspQI GCTCTTC 1 cut(s) 2526
BspTNI GGTCTC 3 cut(s) 63, 458, 2275
BsrBI CCGCTC 1 cut(s) 186
BsrDI GCAATG 7 cut(s) 428, 597, 825, 957, 1240, 1899, 2045
BsrGI TGTACA 2 cut(s) 1215, 1648
BsrI ACTGG 6 cut(s) 342, 535, 1270, 1458, 2263, 2608
BssECI CCNNGG 5 cut(s) 712, 973, 1025, 1813, 1867
BssNI GRCGYC 2 cut(s) 1190, 2058
BssT1I CCWWGG 4 cut(s) 712, 973, 1813, 1867
Bst2UI CCWGG 5 cut(s) 1027, 1080, 1532, 2301, 2860
Bst4CI ACNGT 8 cut(s) 53, 159, 168, 213, 644, 1156, 2082, 2147
Bst6I CTCTTC 1 cut(s) 2526
BstACI GRCGYC 2 cut(s) 1190, 2058
BstAPI GCANNNNNTGC 1 cut(s) 773
BstAUI TGTACA 2 cut(s) 1215, 1648
BstC8I GCNNGC 5 cut(s) 194, 243, 1252, 1481, 2172
BstDSI CCRYGG 2 cut(s) 712, 973
BstEII GGTNACC 2 cut(s) 611, 1439
BstFNI CGCG 5 cut(s) 558, 681, 804, 921, 2275
BstMAI GTCTC 7 cut(s) 50, 63, 379, 458, 736, 1444, 2275
BstMWI GCNNNNNNNGC 6 cut(s) 397, 773, 782, 810, 2014, 2083
BstNI CCWGG 5 cut(s) 1027, 1080, 1532, 2301, 2860
BstNSI RCATGY 2 cut(s) 1678, 2225
BstPI GGTNACC 2 cut(s) 611, 1439
BstSCI CCNGG 8 cut(s) 245, 259, 283, 1025, 1078, 1530, 2299, 2858
BstSLI GKGCMC 1 cut(s) 1023
BstUI CGCG 5 cut(s) 558, 681, 804, 921, 2275
BstV1I GCAGC 9 cut(s) 852, 1529, 1532, 1714, 1717, 1726, 2473, 2698, 2764
BstV2I GAAGAC 5 cut(s) 30, 138, 510, 1170, 2739
BstX2I RGATCY 1 cut(s) 2359
BstXI CCANNNNNNTGG 1 cut(s) 449
BstYI RGATCY 1 cut(s) 2359
Bsu36I CCTNAGG 1 cut(s) 2508
BsuI GTATCC 1 cut(s) 2211
BsuRI GGCC 7 cut(s) 245, 711, 832, 964, 972, 1174, 2326
BtgI CCRYGG 2 cut(s) 712, 973
BtrI CACGTC 1 cut(s) 423
BtsI GCAGTG 2 cut(s) 1836, 2311
BtsIMutI CAGTG 7 cut(s) 209, 233, 1836, 1845, 2087, 2311, 2440
BveI ACCTGC 1 cut(s) 758
Cac8I GCNNGC 5 cut(s) 194, 243, 1252, 1481, 2172
CaiI CAGNNNCTG 1 cut(s) 1523
CciI TCATGA 3 cut(s) 1258, 1285, 1405
CseI GACGC 4 cut(s) 184, 185, 1198, 2047
Csp6I GTAC 5 cut(s) 82, 124, 144, 1216, 1649
CspCI CAANNNNNGTGG 4 cut(s) 304, 339, 751, 786
CviQI GTAC 5 cut(s) 82, 124, 144, 1216, 1649
DraIII CACNNNGTG 1 cut(s) 887
EaeI YGGCCR 1 cut(s) 970
Eam1104I CTCTTC 1 cut(s) 2526
EarI CTCTTC 1 cut(s) 2526
EciI GGCGGA 1 cut(s) 375
Ecl136II GAGCTC 1 cut(s) 892
Eco130I CCWWGG 4 cut(s) 712, 973, 1813, 1867
Eco147I AGGCCT 1 cut(s) 1174
Eco24I GRGCYC 3 cut(s) 513, 894, 1036
Eco31I GGTCTC 3 cut(s) 63, 458, 2275
Eco47I GGWCC 6 cut(s) 106, 379, 472, 1276, 2104, 2240
Eco53kI GAGCTC 1 cut(s) 892
Eco57I CTGAAG 2 cut(s) 2472, 2751
Eco81I CCTNAGG 1 cut(s) 2508
Eco88I CYCGRG 5 cut(s) 85, 271, 1484, 1657, 2391
Eco91I GGTNACC 2 cut(s) 611, 1439
EcoICRI GAGCTC 1 cut(s) 892
EcoO109I RGGNCCY 4 cut(s) 830, 962, 2240, 2324
EcoO65I GGTNACC 2 cut(s) 611, 1439
EcoRI GAATTC 3 cut(s) 2137, 2158, 2463
EcoRII CCWGG 5 cut(s) 1025, 1078, 1530, 2299, 2858
EcoT14I CCWWGG 4 cut(s) 712, 973, 1813, 1867
EcoT38I GRGCYC 3 cut(s) 513, 894, 1036
ErhI CCWWGG 4 cut(s) 712, 973, 1813, 1867
Esp3I CGTCTC 1 cut(s) 50
FaqI GGGAC 2 cut(s) 1079, 2253
FauI CCCGC 3 cut(s) 22, 624, 674
FauNDI CATATG 2 cut(s) 490, 1432
FbaI TGATCA 3 cut(s) 406, 1981, 2050
FriOI GRGCYC 3 cut(s) 513, 894, 1036
FspBI CTAG 3 cut(s) 150, 621, 2214
GsaI CCCAGC 2 cut(s) 600, 2496
GsuI CTGGAG 3 cut(s) 1941, 1942, 2091
HaeIII GGCC 7 cut(s) 245, 711, 832, 964, 972, 1174, 2326
HapII CCGG 5 cut(s) 247, 260, 284, 319, 1596
HgaI GACGC 4 cut(s) 184, 185, 1198, 2047
Hin1I GRCGYC 2 cut(s) 1190, 2058
HincII GTYRAC 2 cut(s) 1672, 1683
HindII GTYRAC 2 cut(s) 1672, 1683
HindIII AAGCTT 1 cut(s) 783
HinfI GANTC 9 cut(s) 206, 250, 256, 496, 1042, 1166, 1205, 1966, 2735
HpaII CCGG 5 cut(s) 247, 260, 284, 319, 1596
HphI GGTGA 6 cut(s) 65, 605, 899, 1115, 2289, 2663
Hpy166II GTNNAC 9 cut(s) 379, 420, 640, 760, 1021, 1216, 1337, 1672, 1683
Hpy188I TCNGA 8 cut(s) 106, 255, 291, 781, 928, 1047, 2143, 2164
Hpy8I GTNNAC 9 cut(s) 379, 420, 640, 760, 1021, 1216, 1337, 1672, 1683
Hpy99I CGWCG 6 cut(s) 53, 64, 78, 140, 172, 427
HpyCH4III ACNGT 8 cut(s) 53, 159, 168, 213, 644, 1156, 2082, 2147
HpyCH4IV ACGT 2 cut(s) 76, 422
HpyCH4V TGCA 9 cut(s) 767, 776, 1021, 1678, 1702, 1829, 1904, 2333, 2714
HpyF10VI GCNNNNNNNGC 6 cut(s) 397, 773, 782, 810, 2014, 2083
HpySE526I ACGT 2 cut(s) 76, 422
Hsp92I GRCGYC 2 cut(s) 1190, 2058
Ksp22I TGATCA 3 cut(s) 406, 1981, 2050
LguI GCTCTTC 1 cut(s) 2526
LmnI GCTCC 8 cut(s) 286, 897, 1247, 1585, 1771, 2035, 2230, 2496
Lsp1109I GCAGC 9 cut(s) 852, 1529, 1532, 1714, 1717, 1726, 2473, 2698, 2764
LweI GCATC 7 cut(s) 785, 1102, 1544, 2183, 2473, 2587, 2755
MaeI CTAG 3 cut(s) 150, 621, 2214
MaeII ACGT 2 cut(s) 76, 422
MbiI CCGCTC 1 cut(s) 186
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 1 cut(s) 2359
MhlI GDGCHC 6 cut(s) 513, 894, 1023, 1036, 2521, 2578
MlsI TGGCCA 1 cut(s) 972
MluCI AATT 6 cut(s) 657, 1264, 2137, 2158, 2249, 2463
MluNI TGGCCA 1 cut(s) 972
MlyI GAGTC 4 cut(s) 490, 1051, 1160, 2729
MmeI TCCRAC 3 cut(s) 1138, 1225, 1254
Mox20I TGGCCA 1 cut(s) 972
MroXI GAANNNNTTC 1 cut(s) 1725
MscI TGGCCA 1 cut(s) 972
MseI TTAA 7 cut(s) 936, 2589, 2643, 2658, 2748, 2775, 2784
MslI CAYNNNNRTG 3 cut(s) 447, 882, 1947
Msp20I TGGCCA 1 cut(s) 972
MspA1I CMGCKG 3 cut(s) 1523, 2492, 2755
MspI CCGG 5 cut(s) 247, 260, 284, 319, 1596
MspR9I CCNGG 8 cut(s) 247, 261, 285, 1027, 1080, 1532, 2301, 2860
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 5 cut(s) 2119, 2499, 2556, 2610, 2667
MvaI CCWGG 5 cut(s) 1027, 1080, 1532, 2301, 2860
MvnI CGCG 5 cut(s) 558, 681, 804, 921, 2275
MwoI GCNNNNNNNGC 6 cut(s) 397, 773, 782, 810, 2014, 2083
NciI CCSGG 3 cut(s) 247, 261, 285
NcoI CCATGG 2 cut(s) 712, 973
NdeI CATATG 2 cut(s) 490, 1432
NlaIV GGNNCC 8 cut(s) 282, 831, 963, 1077, 1299, 1858, 2241, 2325
NmuCI GTSAC 7 cut(s) 20, 611, 1103, 1819, 1873, 1912, 2059
NspI RCATGY 2 cut(s) 1678, 2225
PaeR7I CTCGAG 3 cut(s) 1484, 1657, 2391
PagI TCATGA 3 cut(s) 1258, 1285, 1405
PaqCI CACCTGC 1 cut(s) 758
PceI AGGCCT 1 cut(s) 1174
PciI ACATGT 1 cut(s) 2221
PciSI GCTCTTC 1 cut(s) 2526
PcsI WCGNNNNNNNCGW 2 cut(s) 431, 562
PctI GAATGC 5 cut(s) 2119, 2499, 2556, 2610, 2667
PdmI GAANNNNTTC 1 cut(s) 1725
PfeI GAWTC 5 cut(s) 206, 250, 256, 1205, 1966
PfoI TCCNGGA 1 cut(s) 1078
PleI GAGTC 4 cut(s) 490, 1050, 1160, 2729
PpsI GAGTC 4 cut(s) 490, 1050, 1160, 2729
PpuMI RGGWCCY 1 cut(s) 2240
PscI ACATGT 1 cut(s) 2221
Psp124BI GAGCTC 1 cut(s) 894
Psp5II RGGWCCY 1 cut(s) 2240
Psp6I CCWGG 5 cut(s) 1025, 1078, 1530, 2299, 2858
PspEI GGTNACC 2 cut(s) 611, 1439
PspFI CCCAGC 2 cut(s) 596, 2492
PspGI CCWGG 5 cut(s) 1025, 1078, 1530, 2299, 2858
PspN4I GGNNCC 8 cut(s) 282, 831, 963, 1077, 1299, 1858, 2241, 2325
PspPPI RGGWCCY 1 cut(s) 2240
PspXI VCTCGAGB 2 cut(s) 1484, 1657
PstNI CAGNNNCTG 1 cut(s) 1523
PsuI RGATCY 1 cut(s) 2359
PvuII CAGCTG 2 cut(s) 1523, 2755
RsaI GTAC 5 cut(s) 83, 125, 145, 1217, 1650
RsaNI GTAC 5 cut(s) 82, 124, 144, 1216, 1649
RseI CAYNNNNRTG 3 cut(s) 447, 882, 1947
SacI GAGCTC 1 cut(s) 894
SapI GCTCTTC 1 cut(s) 2526
SaqAI TTAA 7 cut(s) 936, 2589, 2643, 2658, 2748, 2775, 2784
ScaI AGTACT 1 cut(s) 125
SchI GAGTC 4 cut(s) 490, 1051, 1160, 2729
ScrFI CCNGG 8 cut(s) 247, 261, 285, 1027, 1080, 1532, 2301, 2860
SduI GDGCHC 6 cut(s) 513, 894, 1023, 1036, 2521, 2578
SfaNI GCATC 7 cut(s) 785, 1102, 1544, 2183, 2473, 2587, 2755
Sfr274I CTCGAG 3 cut(s) 1484, 1657, 2391
SinI GGWCC 6 cut(s) 106, 379, 472, 1276, 2104, 2240
SlaI CTCGAG 3 cut(s) 1484, 1657, 2391
SmiMI CAYNNNNRTG 3 cut(s) 447, 882, 1947
Sse9I AATT 6 cut(s) 657, 1264, 2137, 2158, 2249, 2463
SseBI AGGCCT 1 cut(s) 1174
SspMI CTAG 3 cut(s) 150, 621, 2214
SstI GAGCTC 1 cut(s) 894
StuI AGGCCT 1 cut(s) 1174
StyD4I CCNGG 8 cut(s) 245, 259, 283, 1025, 1078, 1530, 2299, 2858
StyI CCWWGG 4 cut(s) 712, 973, 1813, 1867
TaaI ACNGT 8 cut(s) 53, 159, 168, 213, 644, 1156, 2082, 2147
TaiI ACGT 2 cut(s) 79, 425
TaqI TCGA 8 cut(s) 41, 215, 565, 1419, 1485, 1658, 1945, 2392
TaqII GACCGA 2 cut(s) 24, 87
TasI AATT 6 cut(s) 657, 1264, 2137, 2158, 2249, 2463
TatI WGTACW 3 cut(s) 123, 1215, 1648
TauI GCSGC 5 cut(s) 189, 192, 561, 807, 2492
TfiI GAWTC 5 cut(s) 206, 250, 256, 1205, 1966
Tru1I TTAA 7 cut(s) 936, 2589, 2643, 2658, 2748, 2775, 2784
Tru9I TTAA 7 cut(s) 936, 2589, 2643, 2658, 2748, 2775, 2784
TscAI CASTG 7 cut(s) 216, 233, 1836, 1852, 2087, 2311, 2440
TseFI GTSAC 7 cut(s) 20, 611, 1103, 1819, 1873, 1912, 2059
TseI GCWGC 9 cut(s) 840, 1517, 1520, 1702, 1705, 1739, 2486, 2711, 2752
Tsp45I GTSAC 7 cut(s) 20, 611, 1103, 1819, 1873, 1912, 2059
TspGWI ACGGA 2 cut(s) 77, 1198
TspRI CASTG 7 cut(s) 216, 233, 1836, 1852, 2087, 2311, 2440
VneI GTGCAC 1 cut(s) 1019
VpaK11BI GGWCC 6 cut(s) 106, 379, 472, 1276, 2104, 2240
XapI RAATTY 3 cut(s) 2137, 2158, 2463
XceI RCATGY 2 cut(s) 1678, 2225
XcmI CCANNNNNNNNNTGG 1 cut(s) 1546
XhoI CTCGAG 3 cut(s) 1484, 1657, 2391
XmnI GAANNNNTTC 1 cut(s) 1725
XspI CTAG 3 cut(s) 150, 621, 2214
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.