Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8049936.1

Orthogroup ID

OG0002243

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 531

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8049936.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ctgctaactctaggaactgttatatcaaagttgacggatgggagggctactcatataccctacagggattctaaactgacccgacttctccaatcttcgctaagtggtcatgggcgtgtctctctcatctgcactgttactccttcatcaagcagttcagaagagacgcataatacattaaagtttgcgcaccgggcaaagcacattgaaattcaagcagcacaaaataag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0035371 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043531 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046872 GO:0046983 GO:0097159 GO:0097367 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1901265 GO:1901363 GO:1990752

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

77

Amino Acids

8.41

Weight (kDa)

10.01

Isoelectric Point (pI)

62.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12020 AT3G12020 AT3G12020 AT3G12020 AT5G06670 AT5G06670 AT5G06670 AT5G06670
fragaria_vesca	FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780
malus_domestica	MD12G1054300.v1.1 MD14G1053100.v1.1
prunus_persica	Prupe.7G082400_v2.0.a1
pyrus_communis	pycom12g04730 pycom14g04410
rosa_chinensis	RchiOBHm_Chr3g0479141
rosa_laevigata	RLG00000023604
rosa_multiflora	Rmu_co8049936.1_g000001 Rmu_co8383491.1_g000001 Rmu_sc0002555.1_g000005
rosa_roxburghii	Rroxscaffold_6G00402700
rosa_rugosa	Rorug03G0171300 Rorug03G0171400
rosa_samantha	Rh3AG222600 Rh3BG255100 Rh3CG250700 Rh3DG247100 Rh6AG090700 Rh6BG153100 Rh6CG078500 Rh6DG074300 Rh6DG137500
rosa_wichuraiana	Rw0G001170 Rw1G014040 Rw3G019950 Rw6G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	209, 215
Alw26I	GTCTC	2 cut(s)	124, 158
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	190
AsuC2I	CCSGG	1 cut(s)	194
BccI	CCATC	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	2 cut(s)	124, 158
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	61
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpuMI	CCSGG	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
BseGI	GGATG	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	193
BsmAI	GTCTC	2 cut(s)	124, 158
BsmBI	CGTCTC	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	19, 136
Bst6I	CTCTTC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	190
BstMAI	GTCTC	2 cut(s)	124, 158
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	132
CfoI	GCGC	1 cut(s)	190
CseI	GACGC	1 cut(s)	175
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	1 cut(s)	47
CviKI_1	RGCY	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	1 cut(s)	113
FaiI	YATR	5 cut(s)	23, 54, 56, 111, 171
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	11
FspI	TGCGCA	1 cut(s)	189
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	219
HapII	CCGG	1 cut(s)	193
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	160
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	2 cut(s)	19, 136
HpyCH4V	TGCA	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	1 cut(s)	188
LpnPI	CCDG	2 cut(s)	49, 206
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	136
MboII	GAAGA	2 cut(s)	87, 173
MluCI	AATT	1 cut(s)	210
MnlI	CCTC	1 cut(s)	36
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	194
NlaIII	CATG	1 cut(s)	113
NsbI	TGCGCA	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	194
SfcI	CTRYAG	1 cut(s)	61
SgeI	CNNG	9 cut(s)	23, 76, 93, 122, 128, 162, 205, 206, 227
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	210
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	2 cut(s)	19, 136
TasI	AATT	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	135
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	210
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.