Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002243

Physical Location & Seq

Genomic Coordinates Reverse (-)

47739459 .. 47742190

Gene Structure 2732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G024570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTTGATTCACTTTGTGATCAAGTCTGAATTGCTGTCAACAACAGAGCACAGGCATGTTGGATCAACAAATTTCAATTTACTCAGTAGCAGGAGCCATACTATATTTACACTGACAATCGAGAGTAGCCCGTGTGGGGAAAATAGTGAAGGTGAAGCTGTAAATCTGTCGCAATTGAACCTCATTGATCTGGCTGGTTCTGAGAGCTCAAAAGCTGAAACTACTGGTGTCAGACGAAAAGAAGGATCCTATATTAATAAGAGTCTGCTAACTCTAGGAACTGTTATATCAAAGTTGACGGATGGGAGGGCTACTCATATACCCTACAGGGATTCTAAACTGACCCGACTTCTCCAATCTTCGCTAAGTGGTCATGGGCGTGTCTCTCTCATCTGCACTGTTACTCCTTCATCAAGCAGTTCAGAAGAGACGCATAATACATTAAAGTTTGCGCACCGGGCAAAGCACATTGAAATTCAAGCAGCACAAAATAAGATTATTGATGAGAAGTCACTTATCAAGAAATATCAAAATGAGATTCGTAATTTAAAGGAAGAGTTAGAACAGTTGAAGAAGGGTATTGTTACAGTTCCTCAACTAAAAGATGCTAGCGAAAATGATATTCTGCTTCTAAAACAAAAGCTTGCATATCTACCATACAAAAGGCGGGACTTGATTTTAGAGGATGAAAACATTGACTTGTTTGTTTCTCCTCTTGAGGGAAATACTGAAACTGCTGATGCACTGAAGGAGGATAAGAAGACTCGGAAGCATGGACTGTTAAACTGTTTAAAGCTACGGAGGTGCCTTGTTTTGGATGTATGGTATAATACTATAACAGGAAAGAAAATGGAATTGAAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0035371 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1990752

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

288

Amino Acids

32.37

Weight (kDa)

9.0

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	12 - 157	1.2e-51	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12020 AT3G12020 AT3G12020 AT3G12020 AT5G06670 AT5G06670 AT5G06670 AT5G06670
fragaria_vesca	FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780 FvH4_6g21780
malus_domestica	MD12G1054300.v1.1 MD14G1053100.v1.1
prunus_persica	Prupe.7G082400_v2.0.a1
pyrus_communis	pycom12g04730 pycom14g04410
rosa_chinensis	RchiOBHm_Chr3g0479141
rosa_laevigata	RLG00000023604
rosa_multiflora	Rmu_co8049936.1_g000001 Rmu_co8383491.1_g000001 Rmu_sc0002555.1_g000005
rosa_roxburghii	Rroxscaffold_6G00402700
rosa_rugosa	Rorug03G0171300 Rorug03G0171400
rosa_samantha	Rh3AG222600 Rh3BG255100 Rh3CG250700 Rh3DG247100 Rh6AG090700 Rh6BG153100 Rh6CG078500 Rh6DG074300 Rh6DG137500
rosa_wichuraiana	Rw0G001170 Rw1G014040 Rw3G019950 Rw6G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	453
AccB1I	GGYRCC	1 cut(s)	804
AciI	CCGC	1 cut(s)	667
AclWI	GGATC	3 cut(s)	70, 240, 253
AcsI	RAATTY	2 cut(s)	70, 474
AcuI	CTGAAG	1 cut(s)	767
AdeI	CACNNNGTG	1 cut(s)	16
AfiI	CCNNNNNNNGG	3 cut(s)	136, 719, 814
AgsI	TTSAA	6 cut(s)	76, 178, 473, 479, 571, 859
AluBI	AGCT	5 cut(s)	158, 207, 215, 643, 796
AluI	AGCT	5 cut(s)	158, 207, 215, 643, 796
Alw21I	GWGCWC	2 cut(s)	51, 209
Alw26I	GTCTC	2 cut(s)	388, 422
AlwI	GGATC	3 cut(s)	70, 240, 253
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	2 cut(s)	70, 474
AseI	ATTAAT	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	454
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	1 cut(s)	164
AsuNHI	GCTAGC	1 cut(s)	608
BamHI	GGATCC	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	804
BanII	GRGCYC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	767
Bbv12I	GWGCWC	2 cut(s)	51, 209
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	1 cut(s)	296
BclI	TGATCA	1 cut(s)	18
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	2 cut(s)	388, 422
BfaI	CTAG	3 cut(s)	275, 609, 865
BfmI	CTRYAG	1 cut(s)	325
BisI	GCNGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	484
Bme1390I	CCNGG	1 cut(s)	458
BmiI	GGNNCC	3 cut(s)	95, 247, 806
BmrFI	CCNGG	1 cut(s)	458
BmsI	GCATC	2 cut(s)	595, 730
BmtI	GCTAGC	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	767
BplI	GAGNNNNNCTC	2 cut(s)	298, 330
BpuEI	CTTGAG	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	458
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 719, 814
Bse1I	ACTGG	1 cut(s)	229
BseGI	GGATG	3 cut(s)	307, 691, 823
BseLI	CCNNNNNNNGG	3 cut(s)	136, 719, 814
BseMII	CTCAG	2 cut(s)	97, 192
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	702
BseXI	GCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	379
BshNI	GGYRCC	1 cut(s)	804
BsiHKAI	GWGCWC	2 cut(s)	51, 209
BsiSI	CCGG	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	683
BslI	CCNNNNNNNGG	3 cut(s)	136, 719, 814
BsmAI	GTCTC	2 cut(s)	388, 422
BsmBI	CGTCTC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	683
Bsp1286I	GDGCHC	2 cut(s)	51, 209
Bsp143I	GATC	4 cut(s)	18, 62, 187, 245
BspACI	CCGC	1 cut(s)	667
BspCNI	CTCAG	2 cut(s)	96, 193
BspLI	GGNNCC	3 cut(s)	95, 247, 806
BspOI	GCTAGC	1 cut(s)	612
BspPI	GGATC	3 cut(s)	70, 240, 253
BspT107I	GGYRCC	1 cut(s)	804
BsrI	ACTGG	1 cut(s)	229
BssMI	GATC	4 cut(s)	18, 62, 187, 245
Bst4CI	ACNGT	6 cut(s)	283, 400, 567, 589, 780, 788
Bst6I	CTCTTC	2 cut(s)	420, 549
BstC8I	GCNNGC	2 cut(s)	610, 645
BstDEI	CTNAG	3 cut(s)	83, 201, 365
BstF5I	GGATG	3 cut(s)	307, 691, 823
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	4 cut(s)	21, 65, 190, 248
BstMAI	GTCTC	2 cut(s)	388, 422
BstMBI	GATC	4 cut(s)	18, 62, 187, 245
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	456
BstSFI	CTRYAG	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	494
BstV2I	GAAGAC	1 cut(s)	767
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	307, 691, 823
BtsIMutI	CAGTG	3 cut(s)	110, 396, 743
Cac8I	GCNNGC	2 cut(s)	610, 645
CfoI	GCGC	1 cut(s)	454
CseI	GACGC	1 cut(s)	439
CviAII	CATG	3 cut(s)	56, 374, 773
CviJI	RGCY	9 cut(s)	96, 129, 158, 194, 207, 215, 311, 643, 796
CviKI_1	RGCY	9 cut(s)	96, 129, 158, 194, 207, 215, 311, 643, 796
DdeI	CTNAG	3 cut(s)	83, 201, 365
DpnI	GATC	4 cut(s)	20, 64, 189, 247
DpnII	GATC	4 cut(s)	18, 62, 187, 245
DraI	TTTAAA	2 cut(s)	549, 792
DraIII	CACNNNGTG	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	420, 549
EarI	CTCTTC	2 cut(s)	420, 549
Ecl136II	GAGCTC	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	209
Eco53kI	GAGCTC	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	767
EcoICRI	GAGCTC	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	209
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	3 cut(s)	59, 377, 776
FaqI	GGGAC	1 cut(s)	683
FatI	CATG	3 cut(s)	55, 373, 772
FauI	CCCGC	1 cut(s)	660
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	483
FokI	GGATG	3 cut(s)	314, 698, 830
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	483
FspBI	CTAG	3 cut(s)	275, 609, 865
FspI	TGCGCA	1 cut(s)	453
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	1 cut(s)	483
HapII	CCGG	1 cut(s)	457
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	3 cut(s)	59, 377, 776
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HincII	GTYRAC	2 cut(s)	39, 297
HindII	GTYRAC	2 cut(s)	39, 297
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	5 cut(s)	7, 262, 332, 538, 763
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	39, 297
Hpy188I	TCNGA	5 cut(s)	28, 202, 233, 424, 768
Hpy188III	TCNNGA	3 cut(s)	121, 520, 716
Hpy8I	GTNNAC	2 cut(s)	39, 297
HpyAV	CCTTC	6 cut(s)	143, 236, 417, 568, 742, 853
HpyCH4III	ACNGT	6 cut(s)	283, 400, 567, 589, 780, 788
HpyCH4V	TGCA	3 cut(s)	396, 647, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	3 cut(s)	83, 201, 365
Hsp92II	CATG	3 cut(s)	59, 377, 776
HspAI	GCGC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	18, 62, 187, 245
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	8 cut(s)	37, 76, 176, 180, 210, 313, 470, 825
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	2 cut(s)	595, 730
MaeI	CTAG	3 cut(s)	275, 609, 865
MaeIII	GTNAC	3 cut(s)	400, 510, 583
MalI	GATC	4 cut(s)	20, 64, 189, 247
MboI	GATC	4 cut(s)	18, 62, 187, 245
MboII	GAAGA	5 cut(s)	351, 437, 566, 583, 772
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	2 cut(s)	51, 209
MluCI	AATT	7 cut(s)	29, 70, 76, 173, 474, 544, 854
MlyI	GAGTC	2 cut(s)	271, 757
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	8 cut(s)	191, 300, 603, 676, 712, 723, 745, 795
MseI	TTAA	5 cut(s)	255, 443, 548, 782, 791
MslI	CAYNNNNRTG	2 cut(s)	54, 378
MspI	CCGG	1 cut(s)	457
MspR9I	CCNGG	1 cut(s)	458
MunI	CAATTG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	458
NciI	CCSGG	1 cut(s)	458
NdeII	GATC	4 cut(s)	18, 62, 187, 245
NheI	GCTAGC	1 cut(s)	608
NlaIII	CATG	3 cut(s)	59, 377, 776
NlaIV	GGNNCC	3 cut(s)	95, 247, 806
NmuCI	GTSAC	1 cut(s)	510
NsbI	TGCGCA	1 cut(s)	453
NspI	RCATGY	1 cut(s)	59
PfeI	GAWTC	3 cut(s)	7, 332, 538
PkrI	GCNGC	1 cut(s)	484
PleI	GAGTC	2 cut(s)	270, 757
PpsI	GAGTC	2 cut(s)	270, 757
PshBI	ATTAAT	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	95, 247, 806
PsuI	RGATCY	1 cut(s)	245
RseI	CAYNNNNRTG	2 cut(s)	54, 378
SacI	GAGCTC	1 cut(s)	209
SaqAI	TTAA	5 cut(s)	255, 443, 548, 782, 791
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	4 cut(s)	18, 62, 187, 245
SchI	GAGTC	2 cut(s)	271, 757
ScrFI	CCNGG	1 cut(s)	458
SduI	GDGCHC	2 cut(s)	51, 209
SetI	ASST	9 cut(s)	154, 160, 183, 209, 217, 645, 798, 806, 864
SfaNI	GCATC	2 cut(s)	595, 730
SfcI	CTRYAG	1 cut(s)	325
SmiMI	CAYNNNNRTG	2 cut(s)	54, 378
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	7 cut(s)	29, 70, 76, 173, 474, 544, 854
SsiI	CCGC	1 cut(s)	667
SspMI	CTAG	3 cut(s)	275, 609, 865
SstI	GAGCTC	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	456
TaaI	ACNGT	6 cut(s)	283, 400, 567, 589, 780, 788
TaqI	TCGA	1 cut(s)	120
TasI	AATT	7 cut(s)	29, 70, 76, 173, 474, 544, 854
TfiI	GAWTC	3 cut(s)	7, 332, 538
Tru1I	TTAA	5 cut(s)	255, 443, 548, 782, 791
Tru9I	TTAA	5 cut(s)	255, 443, 548, 782, 791
TscAI	CASTG	3 cut(s)	117, 403, 750
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	510
TspDTI	ATGAA	2 cut(s)	399, 702
TspGWI	ACGGA	2 cut(s)	314, 814
TspRI	CASTG	3 cut(s)	117, 403, 750
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	2 cut(s)	70, 474
XceI	RCATGY	1 cut(s)	59
XspI	CTAG	3 cut(s)	275, 609, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.